Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014742

Physical Location & Seq

Genomic Coordinates Reverse (-)

18559674 .. 18560835

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTAACACTACGGGTGTGCGCTACAACATTGGCAAGGATGCCAGAGATCTTCTCTACAAGGACTATGTTCATGAACCGCCGATTCGGTTTGACTCCAAAAACTTCAACTGGATCAGTGACATCTCGTGCAAAGTTAATTTGATTGCTCCTGGACTCAGCACCCTTTTCAGTATTAACGTGCCAGATTATGGCCGGGTAGAAATGCAATACGAAAATGGTGTTGTCGAGATTGCTGGAGGAATCGGGTTGAAAAGAAATCCGCTGAAAATGTGTGATCCGATTGCACTCTTTTCTGCAGTGATAGGAGGCAGTTCTGTGTGCTCCATTGGAACCGACCTTGCCTTCGACATATCTGCGGGAGAATTCGCAAAATTCAGTGCCGGTTTCAGCTTGAACAGCGACTTTGTTTCTGCTTCCTTATCCATGGACAAGCTTGACACTTTAAAAGCTTCATGCTTCACCGTGGTCAACCCCCTGAGCAACACAGCCCTTGGAGCAGAGTTGAAGCACCGGTTTTCAACCAACGATAGTGCCCTTGCTGTTGGCGCCCAGCACGCGTTTTTTCCATCTACCCTGGCGAAGGCTCGAGTTAGCACATACGGGAATGTTGGCGTTCTTATACGGCAAGGGTTATCGCAGAAGTTGTTCCTGTCTATGTCCGGAGAAGTGGATTTTATGAGCGTACAGAGAAGTCCAAGATTTGGATTCTCTCTTTCTGTTAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

244

Amino Acids

26.25

Weight (kDa)

8.32

Isoelectric Point (pI)

24.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014742)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15480
malus_domestica	MD06G1188300.v1.1 MD14G1194800.v1.1
prunus_persica	Prupe.5G186500_v2.0.a1
pyrus_communis	pycom14g16180
rosa_chinensis	RchiOBHm_Chr7g0180611
rosa_laevigata	RLG00000005250
rosa_multiflora	Rmu_sc0005690.1_g000021 Rmu_sc0023372.1_g000001 Rmu_sc0023372.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272740
rosa_rugosa	Rorug06G0434600
rosa_samantha	Rh7AG035600 Rh7BG035500 Rh7CG037200 Rh7DG035800
rosa_wichuraiana	Rw7G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	548
AccB7I	CCANNNNNTGG	2 cut(s)	191, 704
AccII	CGCG	1 cut(s)	560
AccIII	TCCGGA	1 cut(s)	662
AciI	CCGC	3 cut(s)	80, 263, 359
AclWI	GGATC	2 cut(s)	122, 272
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	365, 374
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	3 cut(s)	191, 583, 704
AflIII	ACRYGT	1 cut(s)	558
AgeI	ACCGGT	1 cut(s)	513
AgsI	TTSAA	5 cut(s)	109, 253, 397, 508, 522
AjnI	CCWGG	2 cut(s)	151, 576
AluBI	AGCT	3 cut(s)	393, 436, 452
AluI	AGCT	3 cut(s)	393, 436, 452
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	122, 272
Ama87I	CYCGRG	1 cut(s)	588
Aor13HI	TCCGGA	1 cut(s)	662
AoxI	GGCC	1 cut(s)	193
ApoI	RAATTY	2 cut(s)	365, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AsiGI	ACCGGT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	2 cut(s)	24, 551
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	588
BaeGI	GKGCMC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	548
BauI	CACGAG	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	326
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	2 cut(s)	153, 578
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	552
BglII	AGATCT	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	153, 197, 578
BmeT110I	CYCGRG	1 cut(s)	588
BmiI	GGNNCC	2 cut(s)	334, 550
BmrFI	CCNGG	3 cut(s)	153, 197, 578
BmsI	GCATC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	549
BsaJI	CCNNGG	4 cut(s)	426, 465, 493, 576
BsaWI	WCCGGW	2 cut(s)	513, 662
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 583, 704
Bse118I	RCCGGY	2 cut(s)	383, 513
Bse1I	ACTGG	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	153, 578
BseDI	CCNNGG	4 cut(s)	426, 465, 493, 576
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	191, 583, 704
BseMII	CTCAG	2 cut(s)	172, 470
BseNI	ACTGG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	1 cut(s)	195
BshNI	GGYRCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	588
BsiSI	CCGG	4 cut(s)	196, 384, 514, 663
BslI	CCNNNNNNNGG	3 cut(s)	191, 583, 704
BsnI	GGCC	1 cut(s)	195
BsoBI	CYCGRG	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	326, 538
Bsp13I	TCCGGA	1 cut(s)	662
Bsp143I	GATC	3 cut(s)	49, 114, 277
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	3 cut(s)	80, 263, 359
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	171, 471
BspEI	TCCGGA	1 cut(s)	662
BspFNI	CGCG	1 cut(s)	560
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	334, 550
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	2 cut(s)	122, 272
BspT107I	GGYRCC	1 cut(s)	548
BsrFI	RCCGGY	2 cut(s)	383, 513
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	2 cut(s)	383, 513
BssECI	CCNNGG	4 cut(s)	426, 465, 493, 576
BssMI	GATC	3 cut(s)	49, 114, 277
BssNI	GRCGYC	1 cut(s)	549
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	426, 493
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	153, 578
Bst4CI	ACNGT	1 cut(s)	466
BstACI	GRCGYC	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	158, 479
BstDSI	CCRYGG	2 cut(s)	426, 465
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	560
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	2 cut(s)	24, 551
BstKTI	GATC	3 cut(s)	52, 117, 280
BstMBI	GATC	3 cut(s)	49, 114, 277
BstMWI	GCNNNNNNNGC	4 cut(s)	399, 497, 548, 557
BstNI	CCWGG	2 cut(s)	153, 578
BstSCI	CCNGG	3 cut(s)	151, 195, 576
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	538
BstUI	CGCG	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	195
BtgI	CCRYGG	2 cut(s)	426, 465
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	124, 306, 385
Cac8I	GCNNGC	1 cut(s)	558
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	2 cut(s)	24, 551
Cfr10I	RCCGGY	2 cut(s)	383, 513
Csp6I	GTAC	1 cut(s)	686
CspAI	ACCGGT	1 cut(s)	513
CviAII	CATG	3 cut(s)	74, 427, 456
CviJI	RGCY	7 cut(s)	195, 393, 436, 452, 491, 587, 727
CviKI_1	RGCY	7 cut(s)	195, 393, 436, 452, 491, 587, 727
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	2 cut(s)	158, 479
DinI	GGCGCC	1 cut(s)	550
DpnI	GATC	3 cut(s)	51, 116, 279
DpnII	GATC	3 cut(s)	49, 114, 277
DraI	TTTAAA	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	426, 493
Eco88I	CYCGRG	1 cut(s)	588
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	151, 576
EcoT14I	CCWWGG	2 cut(s)	426, 493
EgeI	GGCGCC	1 cut(s)	550
EheI	GGCGCC	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	426, 493
FaeI	CATG	3 cut(s)	77, 430, 459
FatI	CATG	3 cut(s)	73, 426, 455
FauI	CCCGC	1 cut(s)	352
FokI	GGATG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	23, 550
GsaI	CCCAGC	1 cut(s)	556
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	4 cut(s)	196, 384, 514, 663
HhaI	GCGC	2 cut(s)	24, 551
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	3 cut(s)	77, 430, 459
Hin6I	GCGC	2 cut(s)	22, 549
HinP1I	GCGC	2 cut(s)	22, 549
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	2 cut(s)	434, 450
HinfI	GANTC	5 cut(s)	85, 95, 156, 243, 708
HpaII	CCGG	4 cut(s)	196, 384, 514, 663
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	282, 731
Hpy188III	TCNNGA	3 cut(s)	74, 229, 663
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	2 cut(s)	355, 577
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	4 cut(s)	132, 208, 287, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	399, 497, 548, 557
HpyF3I	CTNAG	2 cut(s)	158, 479
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	3 cut(s)	77, 430, 459
HspAI	GCGC	2 cut(s)	22, 549
KasI	GGCGCC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	662
Kzo9I	GATC	3 cut(s)	49, 114, 277
LmnI	GCTCC	3 cut(s)	154, 329, 497
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	5, 119
MalI	GATC	3 cut(s)	51, 116, 279
MboI	GATC	3 cut(s)	49, 114, 277
MboII	GAAGA	1 cut(s)	44
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	326, 538
MluCI	AATT	3 cut(s)	139, 365, 374
MluI	ACGCGT	1 cut(s)	558
Mly113I	GGCGCC	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	89, 150
MnlI	CCTC	2 cut(s)	233, 302
MroI	TCCGGA	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	3 cut(s)	138, 177, 446
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	4 cut(s)	196, 384, 514, 663
MspR9I	CCNGG	3 cut(s)	153, 197, 578
MvaI	CCWGG	2 cut(s)	153, 578
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	4 cut(s)	399, 497, 548, 557
NarI	GGCGCC	1 cut(s)	549
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	49, 114, 277
NlaIII	CATG	3 cut(s)	77, 430, 459
NlaIV	GGNNCC	2 cut(s)	334, 550
NmuCI	GTSAC	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	588
PagI	TCATGA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	85, 243, 708
PflMI	CCANNNNNTGG	2 cut(s)	191, 704
PfoI	TCCNGGA	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	513
PleI	GAGTC	2 cut(s)	89, 150
PluTI	GGCGCC	1 cut(s)	552
PpsI	GAGTC	2 cut(s)	89, 150
Psp6I	CCWGG	2 cut(s)	151, 576
PspFI	CCCAGC	1 cut(s)	552
PspGI	CCWGG	2 cut(s)	151, 576
PspN4I	GGNNCC	2 cut(s)	334, 550
PspXI	VCTCGAGB	1 cut(s)	588
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	138, 177, 446
Sau3AI	GATC	3 cut(s)	49, 114, 277
SchI	GAGTC	2 cut(s)	89, 150
ScrFI	CCNGG	3 cut(s)	153, 197, 578
SduI	GDGCHC	2 cut(s)	326, 538
SetI	ASST	5 cut(s)	183, 342, 395, 438, 454
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	550
Sfr274I	CTCGAG	1 cut(s)	588
SlaI	CTCGAG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
Sse9I	AATT	3 cut(s)	139, 365, 374
SsiI	CCGC	3 cut(s)	80, 263, 359
SspDI	GGCGCC	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	151, 195, 576
StyI	CCWWGG	2 cut(s)	426, 493
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	3 cut(s)	228, 348, 589
TasI	AATT	3 cut(s)	139, 365, 374
TfiI	GAWTC	3 cut(s)	85, 243, 708
Tru1I	TTAA	3 cut(s)	138, 177, 446
Tru9I	TTAA	3 cut(s)	138, 177, 446
TscAI	CASTG	3 cut(s)	124, 306, 385
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	62, 90, 444
TspRI	CASTG	3 cut(s)	124, 306, 385
Van91I	CCANNNNNTGG	2 cut(s)	191, 704
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	365, 374
XhoI	CTCGAG	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.