Rh7DG035800

Mitochondrial outer membrane protein porin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014742
Physical Location & Seq
Reverse (-)
2653726 .. 2654465
740 bp
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UTR
Exon/CDS
Intron
Rh7DG035800.1

Sequence Viewer

Length: 450 bp
ATGATTAACACTCCAGGTGAATTCTATGACATTGGCAAGAAGGCCAGAGATCTTCTGCATAAGGACTATGCTCATCAACCACGCGTGCCAATTCATTTTGATTATCGAAGCCTCAAGTCAAATACTGATATCTCATGCAGAGTTAAAGATATTGTTCCAATTGTTCCTGAACTCAACACCCTTTTCAGTTTTGTCACGCCAAATTCTGGCAAGGTGGAGCTGGAATACCTAAATGGTCTTGCTGGTATTAGTGGAGGCATTGGACTGATACAAAACGATGCCCTTAGAAGATTTGAACCAATTGCAAACCTTTCAGGTGTGATAGGACGAGGCGCTCTTTTCTCCTTCGGAACGGACCTTGCCTTTGACATATATACAGGGCAATTCAACAAATTCAATGCTGGTTTGAGCTTGAATAGTGACTTTGTTAATACTTCCTTGTCCTTGTGA

Protein Analysis

149

Amino Acids

16.4

Weight (kDa)

6.27

Isoelectric Point (pI)

23.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porin_3 PF01459 50 - 147 8.6e-09 Eukaryotic porin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014742)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15480
malus_domestica MD06G1188300.v1.1 MD14G1194800.v1.1
prunus_persica Prupe.5G186500_v2.0.a1
pyrus_communis pycom14g16180
rosa_chinensis RchiOBHm_Chr7g0180611
rosa_laevigata RLG00000005250
rosa_multiflora Rmu_sc0005690.1_g000021 Rmu_sc0023372.1_g000001 Rmu_sc0023372.1_g000002
rosa_roxburghii Rroxscaffold_3G00272740
rosa_rugosa Rorug06G0434600
rosa_samantha Rh7AG035600 Rh7BG035500 Rh7CG037200 Rh7DG035800
rosa_wichuraiana Rw7G002930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AccII CGCG 1 cut(s) 84
AcsI RAATTY 3 cut(s) 20, 202, 392
AfiI CCNNNNNNNGG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 4 cut(s) 296, 388, 397, 415
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 2 cut(s) 220, 411
AluI AGCT 2 cut(s) 220, 411
AoxI GGCC 1 cut(s) 42
ApoI RAATTY 3 cut(s) 20, 202, 392
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 355
BciT130I CCWGG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 336
BglII AGATCT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 1 cut(s) 44
BspFNI CGCG 1 cut(s) 84
BssMI GATC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 284
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstUI CGCG 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 355
CviAII CATG 1 cut(s) 135
CviJI RGCY 4 cut(s) 44, 111, 220, 411
CviKI_1 RGCY 4 cut(s) 44, 111, 220, 411
DdeI CTNAG 1 cut(s) 284
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 355
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 13
EcoRV GATATC 1 cut(s) 130
FaeI CATG 1 cut(s) 138
FaiI YATR 7 cut(s) 27, 60, 69, 136, 371, 373, 375
FatI CATG 1 cut(s) 134
GlaI GCGC 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 1 cut(s) 44
HhaI GCGC 1 cut(s) 335
Hin1II CATG 1 cut(s) 138
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 34, 355
HpyCH4V TGCA 3 cut(s) 58, 138, 305
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 1 cut(s) 138
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 9 cut(s) 27, 58, 180, 192, 206, 228, 300, 363, 387
LweI GCATC 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 193, 419
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 44, 300
MfeI CAATTG 2 cut(s) 159, 300
MflI RGATCY 1 cut(s) 49
MluCI AATT 7 cut(s) 20, 90, 159, 202, 300, 383, 392
MluI ACGCGT 1 cut(s) 82
MnlI CCTC 3 cut(s) 122, 248, 323
MseI TTAA 3 cut(s) 6, 144, 429
MspR9I CCNGG 1 cut(s) 15
MunI CAATTG 2 cut(s) 159, 300
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 84
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 138
NmuCI GTSAC 2 cut(s) 193, 419
PflMI CCANNNNNTGG 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspPI GGNCC 1 cut(s) 355
PsuI RGATCY 1 cut(s) 49
SaqAI TTAA 3 cut(s) 6, 144, 429
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 15
SetI ASST 8 cut(s) 19, 216, 222, 231, 312, 319, 360, 413
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 7 cut(s) 20, 90, 159, 202, 300, 383, 392
StyD4I CCNGG 1 cut(s) 13
TaqI TCGA 1 cut(s) 106
TasI AATT 7 cut(s) 20, 90, 159, 202, 300, 383, 392
Tru1I TTAA 3 cut(s) 6, 144, 429
Tru9I TTAA 3 cut(s) 6, 144, 429
TseFI GTSAC 2 cut(s) 193, 419
Tsp45I GTSAC 2 cut(s) 193, 419
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 368
Van91I CCANNNNNTGG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 3 cut(s) 20, 202, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.