Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014742

Physical Location & Seq

Genomic Coordinates Reverse (-)

15429431 .. 15431534

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G186500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGTCACACTCCAGGTGCCTCCTTCAACATTGGCAAGGAGGCCAGAGATCTTCTCTACAAAGATTTTGCTTATCAACCGCCCGTGCGGTTTGATTATCGAAGCCTCAACTGGAACAGTGATGTTTCATGCAAAGTTAAACTGATTGCTCCTGGCCTCAGCACCCTCTTCAGTTTTACCATACCAGATTATGGCAGGGTGGAGCTGCAATATGAAAACCCTTTTGCTGGGATTGCTGGAGGAATGGGACTGATACGAAATTCTTCCAATACATATGATCCAGTTGCAAACTTCTCTGGTGTGGTAGGCATAGGAGGCAGTTCTCTGTTCACCATTGGAGCTGACCTTGCCGTTGACATAGCTACGGGGGCATTTGACAATTTCAACGCTGGTTTGAGCTTCAATAGTGCCTTTGCTACTGTTTCCTTGTCCTTGGACAAGCTTGATACTTTAAAAGCTTCATGGTACCACATGGTGAACCCCCTGACCAACACAGCCCTAGGAGCAGAGTTGAAACATAGCTTTTCAACAAATGATACTGCCCTCGCGGTCGGTGCCCGGCATGCATTTTTGCCCTCTACGCTGGCGAAGGCTCGAGTTAGCACGCACGGCAGCGTTGGTGTTGTTATACAGCAAGGATTCTGGCAAAAGATCTTTATGTCTATATCTGGAGAGGTGGATTTTGTAGGCATGAACAAAAGTCCAAAAATTGGACTGTCTCTGGCTGTTAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

246

Amino Acids

26.23

Weight (kDa)

7.85

Isoelectric Point (pI)

18.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014742)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15480
malus_domestica	MD06G1188300.v1.1 MD14G1194800.v1.1
prunus_persica	Prupe.5G186500_v2.0.a1
pyrus_communis	pycom14g16180
rosa_chinensis	RchiOBHm_Chr7g0180611
rosa_laevigata	RLG00000005250
rosa_multiflora	Rmu_sc0005690.1_g000021 Rmu_sc0023372.1_g000001 Rmu_sc0023372.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272740
rosa_rugosa	Rorug06G0434600
rosa_samantha	Rh7AG035600 Rh7BG035500 Rh7CG037200 Rh7DG035800
rosa_wichuraiana	Rw7G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	3 cut(s)	17, 465, 554
AccB7I	CCANNNNNTGG	2 cut(s)	191, 710
AccII	CGCG	1 cut(s)	548
AciI	CCGC	3 cut(s)	80, 88, 548
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	154
AdeI	CACNNNGTG	1 cut(s)	475
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	191, 227, 710
AgsI	TTSAA	5 cut(s)	28, 385, 403, 514, 528
AjnI	CCWGG	2 cut(s)	13, 151
AluBI	AGCT	7 cut(s)	205, 341, 362, 399, 442, 458, 522
AluI	AGCT	7 cut(s)	205, 341, 362, 399, 442, 458, 522
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	272
Ama87I	CYCGRG	1 cut(s)	594
AoxI	GGCC	2 cut(s)	42, 154
ApeKI	GCWGC	2 cut(s)	205, 612
ApoI	RAATTY	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	262
Asp718I	GGTACC	1 cut(s)	465
AspA2I	CCTAGG	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	322, 487
AvaI	CYCGRG	1 cut(s)	594
AvrII	CCTAGG	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	559
BanI	GGYRCC	3 cut(s)	17, 465, 554
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	192, 624
BceAI	ACGGC	2 cut(s)	335, 625
BciT130I	CCWGG	2 cut(s)	15, 153
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	1 cut(s)	500
BglII	AGATCT	2 cut(s)	49, 651
BisI	GCNGC	2 cut(s)	206, 613
BlnI	CCTAGG	1 cut(s)	499
BlsI	GCNGC	2 cut(s)	207, 614
Bme1390I	CCNGG	3 cut(s)	15, 153, 559
BmeT110I	CYCGRG	1 cut(s)	594
BmiI	GGNNCC	3 cut(s)	19, 467, 556
BmrFI	CCNGG	3 cut(s)	15, 153, 559
BplI	GAGNNNNNCTC	3 cut(s)	27, 39, 71
BpmI	CTGGAG	2 cut(s)	258, 690
Bpu10I	CCTNAGC	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	432, 499
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 227, 710
Bse1I	ACTGG	2 cut(s)	116, 281
BseBI	CCWGG	2 cut(s)	15, 153
BseDI	CCNNGG	2 cut(s)	432, 499
BseLI	CCNNNNNNNGG	3 cut(s)	191, 227, 710
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	116, 281
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	192, 624
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	552
BshFI	GGCC	2 cut(s)	44, 156
BshNI	GGYRCC	3 cut(s)	17, 465, 554
BsiEI	CGRYCG	1 cut(s)	552
BsiHKCI	CYCGRG	1 cut(s)	594
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	191, 227, 710
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	44, 156
BsoBI	CYCGRG	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	49, 277, 651
BspACI	CCGC	3 cut(s)	80, 88, 548
BspANI	GGCC	2 cut(s)	44, 156
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	3 cut(s)	19, 467, 556
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	3 cut(s)	17, 465, 554
BsrI	ACTGG	2 cut(s)	116, 281
BssECI	CCNNGG	2 cut(s)	432, 499
BssMI	GATC	3 cut(s)	49, 277, 651
BssT1I	CCWWGG	2 cut(s)	432, 499
Bst2UI	CCWGG	2 cut(s)	15, 153
Bst4CI	ACNGT	3 cut(s)	119, 421, 717
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	3 cut(s)	564, 585, 605
BstDEI	CTNAG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	3 cut(s)	52, 280, 654
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	3 cut(s)	49, 277, 651
BstMCI	CGRYCG	1 cut(s)	552
BstMWI	GCNNNNNNNGC	9 cut(s)	233, 315, 347, 368, 503, 554, 563, 580, 609
BstNI	CCWGG	2 cut(s)	15, 153
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	13, 151, 557
BstSLI	GKGCMC	1 cut(s)	559
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	192, 624
BstX2I	RGATCY	2 cut(s)	49, 651
BstYI	RGATCY	2 cut(s)	49, 651
BsuRI	GGCC	2 cut(s)	44, 156
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	564, 585, 605
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	5 cut(s)	129, 462, 472, 563, 691
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	3 cut(s)	51, 279, 653
DpnII	GATC	3 cut(s)	49, 277, 651
DraI	TTTAAA	1 cut(s)	453
DraIII	CACNNNGTG	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	432, 499
Eco57I	CTGAAG	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	13, 151
EcoT14I	CCWWGG	2 cut(s)	432, 499
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	2 cut(s)	432, 499
FaeI	CATG	5 cut(s)	132, 465, 475, 566, 694
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	5 cut(s)	128, 461, 471, 562, 690
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	206, 613
Fsp4HI	GCNGC	2 cut(s)	206, 613
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	2 cut(s)	206, 613
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	2 cut(s)	258, 690
HaeIII	GGCC	2 cut(s)	44, 156
HapII	CCGG	1 cut(s)	559
Hin1II	CATG	5 cut(s)	132, 465, 475, 566, 694
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	2 cut(s)	440, 456
HinfI	GANTC	2 cut(s)	4, 639
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	2 cut(s)	322, 487
Hpy166II	GTNNAC	3 cut(s)	330, 355, 478
Hpy188III	TCNNGA	1 cut(s)	669
Hpy8I	GTNNAC	3 cut(s)	330, 355, 478
HpyAV	CCTTC	2 cut(s)	34, 583
HpyCH4III	ACNGT	3 cut(s)	119, 421, 717
HpyCH4V	TGCA	4 cut(s)	132, 208, 287, 566
HpyF10VI	GCNNNNNNNGC	9 cut(s)	233, 315, 347, 368, 503, 554, 563, 580, 609
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	5 cut(s)	132, 465, 475, 566, 694
KpnI	GGTACC	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	49, 277, 651
LmnI	GCTCC	4 cut(s)	154, 202, 338, 503
Lsp1109I	GCAGC	2 cut(s)	192, 624
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	3 cut(s)	51, 279, 653
MboI	GATC	3 cut(s)	49, 277, 651
MboII	GAAGA	3 cut(s)	44, 160, 255
MflI	RGATCY	2 cut(s)	49, 651
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	3 cut(s)	259, 379, 708
MlyI	GAGTC	1 cut(s)	13
Mph1103I	ATGCAT	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	262
MseI	TTAA	2 cut(s)	138, 452
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	3 cut(s)	15, 153, 559
MvaI	CCWGG	2 cut(s)	15, 153
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	9 cut(s)	233, 315, 347, 368, 503, 554, 563, 580, 609
NciI	CCSGG	1 cut(s)	559
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	3 cut(s)	49, 277, 651
NlaIII	CATG	5 cut(s)	132, 465, 475, 566, 694
NlaIV	GGNNCC	3 cut(s)	19, 467, 556
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	639
PflMI	CCANNNNNTGG	2 cut(s)	191, 710
PkrI	GCNGC	2 cut(s)	207, 614
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	13, 151
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	13, 151
PspN4I	GGNNCC	3 cut(s)	19, 467, 556
PspXI	VCTCGAGB	1 cut(s)	594
PsuI	RGATCY	2 cut(s)	49, 651
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	138, 452
SatI	GCNGC	2 cut(s)	206, 613
Sau3AI	GATC	3 cut(s)	49, 277, 651
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	15, 153, 559
SduI	GDGCHC	1 cut(s)	559
Sfr274I	CTCGAG	1 cut(s)	594
SlaI	CTCGAG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	3 cut(s)	259, 379, 708
SsiI	CCGC	3 cut(s)	80, 88, 548
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	3 cut(s)	13, 151, 557
StyI	CCWWGG	2 cut(s)	432, 499
TaaI	ACNGT	3 cut(s)	119, 421, 717
TaqI	TCGA	2 cut(s)	100, 595
TasI	AATT	3 cut(s)	259, 379, 708
TfiI	GAWTC	1 cut(s)	639
Tru1I	TTAA	2 cut(s)	138, 452
Tru9I	TTAA	2 cut(s)	138, 452
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	205, 612
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	117, 228, 450, 707
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	2 cut(s)	191, 710
XapI	RAATTY	1 cut(s)	259
XceI	RCATGY	1 cut(s)	566
XhoI	CTCGAG	1 cut(s)	594
XmaJI	CCTAGG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.