Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009457

Physical Location & Seq

Genomic Coordinates Forward (+)

32693378 .. 32697765

Gene Structure 4388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1190600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGGATCGACTGCCGGAGCCAATACTTTCCCCAAGGTTGGGCAGCCGAATAATAGAGCATAACCGCGTAACCGAAAACGGTATTTGGTGGGAGTCAATTTTGGAGTCTCTAATCTCTCAACGAAAGCAAAGCACAAATAAGCACGGCCTTTCAGTCACTGAAATTCCCGTTAAAAACCTAAAATACCCTCGTTCCCTATTCAAATTTCCCACTCGCACCACCGGACGGGAATGGTTTGAGACGACCATGGATTCGGCGGTCCAGACCCTCCCTCCCGCCTCCGACCTCCCGCCCTCGATCGTCTCCTTTCTCGACGACAAGTTCCGGACCAATGAAAATCTGAGCGGGGCTCCGACTCTCCTCTCGGAGCTCCAATCCCAGTGCGGTGACCTGGATCGAACCCTAATCGACCTGAATCGGAGGCTCGGATCCTCGCTTCTAACTTACGCTTCGTTCTCCGATCGAGTCCACGGCCTCTTAGGCGGTATCAATGCCCAATTGGCGGGTCTTGGATCCTCCACCCGCTCTCGCACTTCAGATGGAGAAGGGAACGAGAGGGCGGAGAAGATATTGGGAGAGGAGCTGCCGGCGTTGGCCAAGGAAGTGGCAAGAGTCCAGTCCGTTCGATCATACGCAGAGACTGCATTGAAGCTTCAAACTATGATTGGTGATATTGAAGATGCTGTATCTTCTACCATGAAGAAAAACTCATGGAAGCATTCAGCAAGACAGAATTCAGAAGAAATGCGTCTGGGTGCTATTAAAACTCTTAAACTGATAGAAGATGTTTTAACTTCAGTTACCAAGACACACCCTCAATGGGCACATCTTGTGTCAACAGTTGATCACAGAGTAGATCGAGCTCTGGCCGTTTTAAGACCCCATGCTATAGCAGATCACCGGGCGCTTCTTACTTCCCTAGGATGGCCACCGCCTCTTGCCACTTTGACTTCCTCAACTCCAGATACAGGGAGATCAACTGAAGTTCTGAATCCTCTTTTCACGATGCAAGGAGACCTCAAAGATCAGTACTGTGAAAACTTTTTAGCCTTGTGCGGCCTACAAGAGTTGCAAAGACGAAGAAAATCGCGTCAACTAGAGGGCTATAATCGTGAGCTTGCTCTTCACCAGCCACTTTGGGTGATTGAAGAGCTTGTGAATCCTATATCATTGGCATCCCAACGCCATTTCACAAAATGGGTTGATAAGCCAGAATTTATATTTGCTCTTGTCTACAAGACCACCAGGGATTATGTTGACTCTATGGATGAATTATTGCAACCACTGGTTGATGAAGCAATGTTAACCGGGTACAGTTGCAGAGAAGAATGGATTTCTGGAATGGTATCATCCTTATCAACATACTTAGTGAAAGAGATATTTCCAAAGTACGCTGGACAGCCAGATGAAGATAGCGTAACGGGTACTCAGTCACAGGCTAGAATATCCTGGCTGCATCTTATTGACTTGATGATATCTTTTGATAAACGAATCAAGTCTCTAATAGAAAATTCTGGAATCTTGCTTTCACTTCAGGATGACGGGAACTTCTTAAAGGTTTCTTCTCTATCAGTTTTCAGTGATCGACCAGATTGGCTTGATTTATGGGCAGAGATAGAATTAAATGATATACTAGAAAAGTTGAAACCTGATGCTGGTGATGAGAGAAATTGGACTATGAAAGTCCAAGGAGCAGCTCTTTTATCTGATACTGAAGATCTCAAAGCTCCTGCAATTTGTAGTGCCTACCTTCGGTGCCTATCATCTGTGGTGGATCGTTGTCGATCATTGCCTAGCATCTCTATGAGGTCCAGATTTCTCAGATTAGCTGGGGTACCTATTATACAAAACTTTTTGGAGAGCTTACTCGTCAGATGCCAAGAGGCTGAAGGTTTGACTGCCTTGACAGATGATGATGGCCTAGTTAAAGTTGCAAACTCCATTAATGGCGCTCACTACATCGAATCTGTTTTAAAGGAATGGTGTGAGGACGTCTTTTTCCTCGAGATTTGGTCAGGTCGGAGTGATCAACTGGGAATATCAGTAGGCGATCAAAGTGGTAATGTCGAGTCAGTGGAAGGTCTAGATAGTGGTATTTTTCACGAGGAGGTTGTAAAGTTGGAGGCGTTTAGAATAGAATGGGCTGAAAAATTGTCTGTTGTTATATTGAGGGGATTTGAGGCTCAAAGTCGGGATTATATGAAGAACAGGAGGCAATGGCAAGAAAAGAGTGAGGATGGTTGGACAGTATCCAGATTTTTAGTTGGCGCTCTAGATTATTTGCAAGGTAAAATATCAGTGGTAGAAACTGATTTGAACGGGATAGACTTTGTCGGGGTGTGGAGAAGTTTGGCAGCTAGAATTGATCGATTGTTTTTCAGCGGTATTCTAATGAGCAATGTGAAGTTTTCTGACAGTGGCGTCGAGAGGCTTGGTAGTGATTTGGAGGTTGTATTTGGGGCATTTCGGGCATGGTGTTTGAGGCCGGAGGGCTTTTTCCCCAAAGTAAGTGAAGGGTTGAAGCTGTTGAAGATGGAAGAAGAGAAACTTCGAAGCAGCTTGGCAAGAGGGGAGAAATGGATGAAGGAGAATGGGATTAGGAATTTAAGTGAAACAGAGGTAGAAAAGATTGTGAAGAGTAGAGTTTTTACGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

886

Amino Acids

99.69

Weight (kDa)

5.46

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINT1_TIP1	PF04437	382 - 880	7.3e-40	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47700
fragaria_vesca	FvH4_5g15230 FvH4_5g15230 FvH4_5g15230
malus_domestica	MD06G1190600.v1.1 MD14G1197500.v1.1
prunus_persica	Prupe.5G189500_v2.0.a1
pyrus_communis	pycom06g16910 pycom14g16400
rosa_chinensis	RchiOBHm_Chr7g0180931
rosa_laevigata	RLG00000005224
rosa_multiflora	Rmu_co8437493.1_g000001 Rmu_sc0004056.1_g000008 Rmu_sc0028441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272410
rosa_rugosa	Rorug06G0437700 Rorug06G0437700
rosa_samantha	Rh7AG039100 Rh7BG038400 Rh7CG040100 Rh7DG038500
rosa_wichuraiana	Rw7G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2420
AatII	GACGTC	1 cut(s)	1995
Acc65I	GGTACC	1 cut(s)	1834
AccB1I	GGYRCC	2 cut(s)	1755, 1834
AccBSI	CCGCTC	2 cut(s)	345, 525
AccI	GTMKAC	1 cut(s)	1233
AccII	CGCG	2 cut(s)	66, 1090
AccIII	TCCGGA	1 cut(s)	324
AclWI	GGATC	7 cut(s)	12, 402, 423, 436, 507, 520, 1782
AcoI	YGGCCR	3 cut(s)	594, 867, 926
AcsI	RAATTY	6 cut(s)	162, 203, 733, 1214, 1510, 2602
AcuI	CTGAAG	6 cut(s)	519, 780, 1002, 1517, 1734, 1908
AcyI	GRCGYC	2 cut(s)	1992, 2421
AfaI	GTAC	5 cut(s)	1031, 1313, 1391, 1426, 1836
AfiI	CCNNNNNNNGG	9 cut(s)	37, 38, 225, 502, 820, 924, 968, 1655, 1752
AgsI	TTSAA	9 cut(s)	202, 649, 656, 677, 1148, 1645, 2317, 2521, 2530
AjnI	CCWGG	3 cut(s)	390, 1244, 1448
Alw21I	GWGCWC	2 cut(s)	372, 865
Alw26I	GTCTC	6 cut(s)	111, 233, 307, 632, 1008, 1503
AlwI	GGATC	7 cut(s)	12, 402, 423, 436, 507, 520, 1782
AlwNI	CAGNNNCTG	2 cut(s)	158, 641
Ama87I	CYCGRG	1 cut(s)	2003
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	8 cut(s)	145, 472, 594, 867, 926, 1057, 1918, 2483
ApeKI	GCWGC	6 cut(s)	42, 583, 1453, 1694, 2354, 2556
ApoI	RAATTY	6 cut(s)	162, 203, 733, 1214, 1510, 2602
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AseI	ATTAAT	1 cut(s)	1944
Asp718I	GGTACC	1 cut(s)	1834
AspA2I	CCTAGG	1 cut(s)	919
AspLEI	GCGC	3 cut(s)	907, 1952, 2270
AspS9I	GGNCC	3 cut(s)	259, 327, 1809
AsuC2I	CCSGG	2 cut(s)	902, 1309
AsuHPI	GGTGA	6 cut(s)	398, 680, 890, 1118, 1153, 1670
AsuII	TTCGAA	1 cut(s)	2551
AvaI	CYCGRG	1 cut(s)	2003
AvaII	GGWCC	3 cut(s)	259, 327, 1809
AvrII	CCTAGG	1 cut(s)	919
BaeGI	GKGCMC	1 cut(s)	826
BalI	TGGCCA	2 cut(s)	596, 928
BamHI	GGATCC	2 cut(s)	428, 512
BanI	GGYRCC	2 cut(s)	1755, 1834
BanII	GRGCYC	3 cut(s)	352, 372, 865
BauI	CACGAG	1 cut(s)	2102
Bbv12I	GWGCWC	2 cut(s)	372, 865
BbvI	GCAGC	6 cut(s)	54, 570, 1440, 1706, 2366, 2568
BccI	CCATC	5 cut(s)	533, 918, 1910, 2231, 2527
BceAI	ACGGC	3 cut(s)	160, 487, 854
BciT130I	CCWGG	3 cut(s)	392, 1246, 1450
BciVI	GTATCC	1 cut(s)	2260
BclI	TGATCA	2 cut(s)	844, 2026
BcnI	CCSGG	2 cut(s)	902, 1309
BcoDI	GTCTC	6 cut(s)	111, 233, 307, 632, 1008, 1503
BfaI	CTAG	9 cut(s)	920, 1097, 1440, 1634, 1794, 1922, 2084, 2273, 2358
BfmI	CTRYAG	1 cut(s)	888
BfoI	RGCGCY	3 cut(s)	908, 1953, 2271
BfuI	GTATCC	1 cut(s)	2260
BglI	GCCNNNNNGGC	2 cut(s)	480, 500
BglII	AGATCT	1 cut(s)	1717
BisI	GCNGC	7 cut(s)	43, 584, 1057, 1454, 1695, 2355, 2557
BlnI	CCTAGG	1 cut(s)	919
BlsI	GCNGC	7 cut(s)	44, 585, 1058, 1455, 1696, 2356, 2558
BmcAI	AGTACT	1 cut(s)	1031
Bme1390I	CCNGG	5 cut(s)	392, 902, 1246, 1309, 1450
Bme18I	GGWCC	3 cut(s)	259, 327, 1809
BmeT110I	CYCGRG	1 cut(s)	2003
BmgT120I	GGNCC	3 cut(s)	259, 327, 1809
BmiI	GGNNCC	6 cut(s)	18, 351, 430, 514, 1757, 1836
BmrFI	CCNGG	5 cut(s)	392, 902, 1246, 1309, 1450
BmrI	ACTGGG	2 cut(s)	373, 2042
BmsI	GCATC	7 cut(s)	670, 996, 1184, 1465, 1642, 1806, 1865
BmuI	ACTGGG	2 cut(s)	373, 2042
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
BpmI	CTGGAG	1 cut(s)	945
Bpu14I	TTCGAA	1 cut(s)	2551
BpuMI	CCSGG	2 cut(s)	902, 1309
Bsa29I	ATCGAT	1 cut(s)	2368
BsaHI	GRCGYC	2 cut(s)	1992, 2421
BsaI	GGTCTC	1 cut(s)	1008
BsaJI	CCNNGG	7 cut(s)	32, 246, 469, 597, 919, 1245, 1687
BsaWI	WCCGGW	2 cut(s)	221, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	9 cut(s)	37, 38, 225, 502, 820, 924, 968, 1655, 1752
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	4 cut(s)	379, 616, 1290, 2037
Bse3DI	GCAATG	4 cut(s)	1305, 1787, 2222, 2404
BseAI	TCCGGA	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	392, 1246, 1450
BseCI	ATCGAT	1 cut(s)	2368
BseDI	CCNNGG	7 cut(s)	32, 246, 469, 597, 919, 1245, 1687
BseGI	GGATG	7 cut(s)	929, 1175, 1273, 1349, 1543, 2242, 2586
BseLI	CCNNNNNNNGG	9 cut(s)	37, 38, 225, 502, 820, 924, 968, 1655, 1752
BseMI	GCAATG	4 cut(s)	1305, 1787, 2222, 2404
BseMII	CTCAG	3 cut(s)	332, 1442, 1834
BseNI	ACTGG	4 cut(s)	379, 616, 1290, 2037
BseRI	GAGGAG	3 cut(s)	350, 593, 2120
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	6 cut(s)	54, 570, 1440, 1706, 2366, 2568
BseYI	CCCAGC	1 cut(s)	1829
Bsh1236I	CGCG	2 cut(s)	66, 1090
Bsh1285I	CGRYCG	2 cut(s)	300, 463
BshFI	GGCC	8 cut(s)	147, 474, 596, 869, 928, 1059, 1920, 2485
BshNI	GGYRCC	2 cut(s)	1755, 1834
BshVI	ATCGAT	1 cut(s)	2368
BsiEI	CGRYCG	2 cut(s)	300, 463
BsiHKAI	GWGCWC	2 cut(s)	372, 865
BsiHKCI	CYCGRG	1 cut(s)	2003
BsiSI	CCGG	7 cut(s)	14, 222, 325, 587, 901, 1308, 2486
BslI	CCNNNNNNNGG	9 cut(s)	37, 38, 225, 502, 820, 924, 968, 1655, 1752
BsmAI	GTCTC	6 cut(s)	111, 233, 307, 632, 1008, 1503
BsmBI	CGTCTC	2 cut(s)	233, 307
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	8 cut(s)	147, 474, 596, 869, 928, 1059, 1920, 2485
Bso31I	GGTCTC	1 cut(s)	1008
BsoBI	CYCGRG	1 cut(s)	2003
Bsp119I	TTCGAA	1 cut(s)	2551
Bsp1286I	GDGCHC	4 cut(s)	352, 372, 826, 865
Bsp13I	TCCGGA	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	246
BspANI	GGCC	8 cut(s)	147, 474, 596, 869, 928, 1059, 1920, 2485
BspCNI	CTCAG	3 cut(s)	333, 1441, 1833
BspDI	ATCGAT	1 cut(s)	2368
BspEI	TCCGGA	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	66, 1090
BspLI	GGNNCC	6 cut(s)	18, 351, 430, 514, 1757, 1836
BspPI	GGATC	7 cut(s)	12, 402, 423, 436, 507, 520, 1782
BspQI	GCTCTTC	2 cut(s)	1128, 1143
BspT104I	TTCGAA	1 cut(s)	2551
BspT107I	GGYRCC	2 cut(s)	1755, 1834
BspTNI	GGTCTC	1 cut(s)	1008
BsrBI	CCGCTC	2 cut(s)	345, 525
BsrDI	GCAATG	4 cut(s)	1305, 1787, 2222, 2404
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	4 cut(s)	379, 616, 1290, 2037
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	7 cut(s)	32, 246, 469, 597, 919, 1245, 1687
BssNI	GRCGYC	2 cut(s)	1992, 2421
BssSI	CACGAG	1 cut(s)	2102
BssT1I	CCWWGG	5 cut(s)	32, 246, 597, 919, 1687
Bst2BI	CACGAG	1 cut(s)	2102
Bst2UI	CCWGG	3 cut(s)	392, 1246, 1450
Bst4CI	ACNGT	6 cut(s)	80, 841, 1034, 1316, 2248, 2417
Bst6I	CTCTTC	4 cut(s)	1128, 1143, 2535, 2630
BstACI	GRCGYC	2 cut(s)	1992, 2421
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBI	TTCGAA	1 cut(s)	2551
BstC8I	GCNNGC	2 cut(s)	588, 1119
BstDEI	CTNAG	5 cut(s)	341, 478, 1366, 1428, 1820
BstDSI	CCRYGG	2 cut(s)	246, 469
BstEII	GGTNACC	1 cut(s)	386
BstF5I	GGATG	7 cut(s)	929, 1175, 1273, 1349, 1543, 2242, 2586
BstFNI	CGCG	2 cut(s)	66, 1090
BstH2I	RGCGCY	3 cut(s)	908, 1953, 2271
BstHHI	GCGC	3 cut(s)	907, 1952, 2270
BstMAI	GTCTC	6 cut(s)	111, 233, 307, 632, 1008, 1503
BstMCI	CGRYCG	2 cut(s)	300, 463
BstMWI	GCNNNNNNNGC	4 cut(s)	480, 500, 641, 2468
BstNI	CCWGG	3 cut(s)	392, 1246, 1450
BstPI	GGTNACC	1 cut(s)	386
BstSCI	CCNGG	5 cut(s)	390, 900, 1244, 1307, 1448
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	1 cut(s)	826
BstUI	CGCG	2 cut(s)	66, 1090
BstV1I	GCAGC	6 cut(s)	54, 570, 1440, 1706, 2366, 2568
BstX2I	RGATCY	3 cut(s)	428, 512, 1717
BstXI	CCANNNNNNTGG	1 cut(s)	604
BstYI	RGATCY	3 cut(s)	428, 512, 1717
Bsu15I	ATCGAT	1 cut(s)	2368
BsuI	GTATCC	1 cut(s)	2260
BsuRI	GGCC	8 cut(s)	147, 474, 596, 869, 928, 1059, 1920, 2485
BsuTUI	ATCGAT	1 cut(s)	2368
BtgI	CCRYGG	2 cut(s)	246, 469
BtsCI	GGATG	7 cut(s)	929, 1175, 1273, 1349, 1543, 2242, 2586
BtsIMutI	CAGTG	7 cut(s)	156, 386, 1283, 1585, 2079, 2304, 2422
Cac8I	GCNNGC	2 cut(s)	588, 1119
CaiI	CAGNNNCTG	2 cut(s)	158, 641
CfoI	GCGC	3 cut(s)	907, 1952, 2270
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	3 cut(s)	259, 327, 1809
ClaI	ATCGAT	1 cut(s)	2368
CseI	GACGC	3 cut(s)	737, 1079, 2410
Csp6I	GTAC	5 cut(s)	1030, 1312, 1390, 1425, 1835
CviAII	CATG	5 cut(s)	247, 697, 711, 884, 2472
CviQI	GTAC	5 cut(s)	1030, 1312, 1390, 1425, 1835
DdeI	CTNAG	5 cut(s)	341, 478, 1366, 1428, 1820
DraI	TTTAAA	1 cut(s)	1974
DrdI	GACNNNNNNGTC	1 cut(s)	2420
DseDI	GACNNNNNNGTC	1 cut(s)	2420
EaeI	YGGCCR	3 cut(s)	594, 867, 926
Eam1104I	CTCTTC	4 cut(s)	1128, 1143, 2535, 2630
EarI	CTCTTC	4 cut(s)	1128, 1143, 2535, 2630
EciI	GGCGGA	1 cut(s)	575
Ecl136II	GAGCTC	2 cut(s)	370, 863
Eco130I	CCWWGG	5 cut(s)	32, 246, 597, 919, 1687
Eco24I	GRGCYC	3 cut(s)	352, 372, 865
Eco31I	GGTCTC	1 cut(s)	1008
Eco32I	GATATC	1 cut(s)	1476
Eco47I	GGWCC	3 cut(s)	259, 327, 1809
Eco53kI	GAGCTC	2 cut(s)	370, 863
Eco57I	CTGAAG	6 cut(s)	519, 780, 1002, 1517, 1734, 1908
Eco88I	CYCGRG	1 cut(s)	2003
Eco91I	GGTNACC	1 cut(s)	386
EcoICRI	GAGCTC	2 cut(s)	370, 863
EcoO65I	GGTNACC	1 cut(s)	386
EcoRI	GAATTC	1 cut(s)	733
EcoRII	CCWGG	3 cut(s)	390, 1244, 1448
EcoRV	GATATC	1 cut(s)	1476
EcoT14I	CCWWGG	5 cut(s)	32, 246, 597, 919, 1687
EcoT38I	GRGCYC	3 cut(s)	352, 372, 865
ErhI	CCWWGG	5 cut(s)	32, 246, 597, 919, 1687
Esp3I	CGTCTC	2 cut(s)	233, 307
FaeI	CATG	5 cut(s)	250, 700, 714, 887, 2475
FalI	AAGNNNNNCTT	2 cut(s)	2532, 2564
FatI	CATG	5 cut(s)	246, 696, 710, 883, 2471
FauI	CCCGC	5 cut(s)	283, 297, 338, 496, 530
FbaI	TGATCA	2 cut(s)	844, 2026
FblI	GTMKAC	1 cut(s)	1233
Fnu4HI	GCNGC	7 cut(s)	43, 584, 1057, 1454, 1695, 2355, 2557
FokI	GGATG	7 cut(s)	936, 1162, 1280, 1336, 1550, 2249, 2593
FriOI	GRGCYC	3 cut(s)	352, 372, 865
Fsp4HI	GCNGC	7 cut(s)	43, 584, 1057, 1454, 1695, 2355, 2557
FspBI	CTAG	9 cut(s)	920, 1097, 1440, 1634, 1794, 1922, 2084, 2273, 2358
GlaI	GCGC	3 cut(s)	906, 1951, 2269
GluI	GCNGC	7 cut(s)	43, 584, 1057, 1454, 1695, 2355, 2557
GsaI	CCCAGC	1 cut(s)	1833
GsuI	CTGGAG	1 cut(s)	945
HaeII	RGCGCY	3 cut(s)	908, 1953, 2271
HaeIII	GGCC	8 cut(s)	147, 474, 596, 869, 928, 1059, 1920, 2485
HapII	CCGG	7 cut(s)	14, 222, 325, 587, 901, 1308, 2486
HgaI	GACGC	3 cut(s)	737, 1079, 2410
HhaI	GCGC	3 cut(s)	907, 1952, 2270
Hin1I	GRCGYC	2 cut(s)	1992, 2421
Hin1II	CATG	5 cut(s)	250, 700, 714, 887, 2475
Hin6I	GCGC	3 cut(s)	905, 1950, 2268
HinP1I	GCGC	3 cut(s)	905, 1950, 2268
HincII	GTYRAC	4 cut(s)	837, 1094, 1258, 1305
HindII	GTYRAC	4 cut(s)	837, 1094, 1258, 1305
HindIII	AAGCTT	1 cut(s)	650
HpaI	GTTAAC	1 cut(s)	1305
HpaII	CCGG	7 cut(s)	14, 222, 325, 587, 901, 1308, 2486
HphI	GGTGA	6 cut(s)	398, 680, 890, 1118, 1153, 1670
Hpy166II	GTNNAC	6 cut(s)	469, 837, 1094, 1234, 1258, 1305
Hpy8I	GTNNAC	6 cut(s)	469, 837, 1094, 1234, 1258, 1305
Hpy99I	CGWCG	2 cut(s)	317, 2426
HpyAV	CCTTC	6 cut(s)	539, 1760, 1883, 2072, 2507, 2578
HpyCH4III	ACNGT	6 cut(s)	80, 841, 1034, 1316, 2248, 2417
HpyCH4IV	ACGT	1 cut(s)	1992
HpyCH4V	TGCA	9 cut(s)	644, 1009, 1072, 1279, 1320, 1456, 1733, 1934, 2284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	480, 500, 641, 2468
HpyF3I	CTNAG	5 cut(s)	341, 478, 1366, 1428, 1820
HpySE526I	ACGT	1 cut(s)	1992
Hsp92I	GRCGYC	2 cut(s)	1992, 2421
Hsp92II	CATG	5 cut(s)	250, 700, 714, 887, 2475
HspAI	GCGC	3 cut(s)	905, 1950, 2268
Kpn2I	TCCGGA	1 cut(s)	324
KpnI	GGTACC	1 cut(s)	1838
KroI	GCCGGC	1 cut(s)	586
KroNI	GCCGGC	1 cut(s)	588
Ksp22I	TGATCA	2 cut(s)	844, 2026
KspAI	GTTAAC	1 cut(s)	1305
LguI	GCTCTTC	2 cut(s)	1128, 1143
LmnI	GCTCC	7 cut(s)	16, 355, 367, 375, 580, 1691, 1732
Lsp1109I	GCAGC	6 cut(s)	54, 570, 1440, 1706, 2366, 2568
LweI	GCATC	7 cut(s)	670, 996, 1184, 1465, 1642, 1806, 1865
MaeI	CTAG	9 cut(s)	920, 1097, 1440, 1634, 1794, 1922, 2084, 2273, 2358
MaeII	ACGT	1 cut(s)	1992
MaeIII	GTNAC	6 cut(s)	67, 154, 386, 799, 1417, 1431
MbiI	CCGCTC	2 cut(s)	345, 525
MfeI	CAATTG	1 cut(s)	497
MflI	RGATCY	3 cut(s)	428, 512, 1717
MhlI	GDGCHC	4 cut(s)	352, 372, 826, 865
MlsI	TGGCCA	2 cut(s)	596, 928
MluNI	TGGCCA	2 cut(s)	596, 928
MlyI	GAGTC	7 cut(s)	101, 113, 349, 474, 621, 1253, 2078
MmeI	TCCRAC	5 cut(s)	306, 377, 2000, 2100, 2222
Mox20I	TGGCCA	2 cut(s)	596, 928
MroI	TCCGGA	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	586
MscI	TGGCCA	2 cut(s)	596, 928
MslI	CAYNNNNRTG	1 cut(s)	1802
Msp20I	TGGCCA	2 cut(s)	596, 928
MspA1I	CMGCKG	1 cut(s)	2382
MspI	CCGG	7 cut(s)	14, 222, 325, 587, 901, 1308, 2486
MspR9I	CCNGG	5 cut(s)	392, 902, 1246, 1309, 1450
MunI	CAATTG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	3 cut(s)	392, 1246, 1450
MvnI	CGCG	2 cut(s)	66, 1090
MwoI	GCNNNNNNNGC	4 cut(s)	480, 500, 641, 2468
NaeI	GCCGGC	1 cut(s)	588
NciI	CCSGG	2 cut(s)	902, 1309
NcoI	CCATGG	1 cut(s)	246
NgoMIV	GCCGGC	1 cut(s)	586
NlaIII	CATG	5 cut(s)	250, 700, 714, 887, 2475
NlaIV	GGNNCC	6 cut(s)	18, 351, 430, 514, 1757, 1836
NmuCI	GTSAC	3 cut(s)	154, 386, 1431
NspV	TTCGAA	1 cut(s)	2551
PaeR7I	CTCGAG	1 cut(s)	2003
PciSI	GCTCTTC	2 cut(s)	1128, 1143
PctI	GAATGC	1 cut(s)	718
PdiI	GCCGGC	1 cut(s)	588
PfeI	GAWTC	7 cut(s)	251, 415, 991, 1159, 1491, 1518, 1964
PflFI	GACNNNGTC	1 cut(s)	2330
PkrI	GCNGC	7 cut(s)	44, 585, 1058, 1455, 1696, 2356, 2558
Ple19I	CGATCG	2 cut(s)	300, 463
PleI	GAGTC	7 cut(s)	100, 112, 349, 473, 620, 1253, 2077
PpsI	GAGTC	7 cut(s)	100, 112, 349, 473, 620, 1253, 2077
PshBI	ATTAAT	1 cut(s)	1944
Psp124BI	GAGCTC	2 cut(s)	372, 865
Psp6I	CCWGG	3 cut(s)	390, 1244, 1448
PspEI	GGTNACC	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	1829
PspGI	CCWGG	3 cut(s)	390, 1244, 1448
PspN4I	GGNNCC	6 cut(s)	18, 351, 430, 514, 1757, 1836
PspPI	GGNCC	3 cut(s)	259, 327, 1809
PstNI	CAGNNNCTG	2 cut(s)	158, 641
PsuI	RGATCY	3 cut(s)	428, 512, 1717
PsyI	GACNNNGTC	1 cut(s)	2330
PvuI	CGATCG	2 cut(s)	300, 463
RsaI	GTAC	5 cut(s)	1031, 1313, 1391, 1426, 1836
RsaNI	GTAC	5 cut(s)	1030, 1312, 1390, 1425, 1835
RseI	CAYNNNNRTG	1 cut(s)	1802
SacI	GAGCTC	2 cut(s)	372, 865
SapI	GCTCTTC	2 cut(s)	1128, 1143
SatI	GCNGC	7 cut(s)	43, 584, 1057, 1454, 1695, 2355, 2557
Sau96I	GGNCC	3 cut(s)	259, 327, 1809
ScaI	AGTACT	1 cut(s)	1031
SchI	GAGTC	7 cut(s)	101, 113, 349, 474, 621, 1253, 2078
ScrFI	CCNGG	5 cut(s)	392, 902, 1246, 1309, 1450
SduI	GDGCHC	4 cut(s)	352, 372, 826, 865
SfaNI	GCATC	7 cut(s)	670, 996, 1184, 1465, 1642, 1806, 1865
SfcI	CTRYAG	1 cut(s)	888
Sfr274I	CTCGAG	1 cut(s)	2003
SfuI	TTCGAA	1 cut(s)	2551
SinI	GGWCC	3 cut(s)	259, 327, 1809
SlaI	CTCGAG	1 cut(s)	2003
SmiMI	CAYNNNNRTG	1 cut(s)	1802
SmlI	CTYRAG	1 cut(s)	2003
SmoI	CTYRAG	1 cut(s)	2003
SspMI	CTAG	9 cut(s)	920, 1097, 1440, 1634, 1794, 1922, 2084, 2273, 2358
SstI	GAGCTC	2 cut(s)	372, 865
StyD4I	CCNGG	5 cut(s)	390, 900, 1244, 1307, 1448
StyI	CCWWGG	5 cut(s)	32, 246, 597, 919, 1687
TaaI	ACNGT	6 cut(s)	80, 841, 1034, 1316, 2248, 2417
TaiI	ACGT	1 cut(s)	1995
TatI	WGTACW	1 cut(s)	1029
TauI	GCSGC	1 cut(s)	1059
TfiI	GAWTC	7 cut(s)	251, 415, 991, 1159, 1491, 1518, 1964
TscAI	CASTG	7 cut(s)	163, 386, 1290, 1585, 2079, 2304, 2422
TseFI	GTSAC	3 cut(s)	154, 386, 1431
TseI	GCWGC	6 cut(s)	42, 583, 1453, 1694, 2354, 2556
Tsp45I	GTSAC	3 cut(s)	154, 386, 1431
TspDTI	ATGAA	8 cut(s)	348, 713, 1284, 1308, 1422, 1694, 2216, 2597
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	7 cut(s)	163, 386, 1290, 1585, 2079, 2304, 2422
Tth111I	GACNNNGTC	1 cut(s)	2330
VpaK11BI	GGWCC	3 cut(s)	259, 327, 1809
VspI	ATTAAT	1 cut(s)	1944
XapI	RAATTY	6 cut(s)	162, 203, 733, 1214, 1510, 2602
XbaI	TCTAGA	2 cut(s)	2083, 2272
XhoI	CTCGAG	1 cut(s)	2003
XmaJI	CCTAGG	1 cut(s)	919
XmiI	GTMKAC	1 cut(s)	1233
XspI	CTAG	9 cut(s)	920, 1097, 1440, 1634, 1794, 1922, 2084, 2273, 2358
ZraI	GACGTC	1 cut(s)	1993
ZrmI	AGTACT	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.