Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001960

Physical Location & Seq

Genomic Coordinates Forward (+)

57137832 .. 57142951

Gene Structure 5120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0437700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCAATGGGTAACCTTAGCACTGATTATCAAGAACAGAATCAGCAGACTGATATTGGTGCTTCAATACGTAATGGAAGAGAAATTCTTTTACAGGCCTTTAACTGGGAATCTCATAAACATGACTGGTGGAAAAATTTAGAAAGTAAAGTTCCAGATATTGCAAAATCTGGATTTACATCAGCATGGTTGCCACCATCAACTCATTCCTTTGCCCCGGAAGGTTACCTCCCTCAGAACATATATTCTCTCAATTCTAAATATGGATCTGAGCACCAATTAAAAGGTTTACTTCAAAAAATGAAGCAATGTAAAATTAGACCAATGGCTGACATAGTTATCAATCATCGTGTTGGGACTACCCAAGGGCATGGTGGAATGTACAATCGTTATGATGGAATTCCTTTGTCATGGGATGAACATGCCGTCACATCTTGTACTGGTGGACTGGGGAATCGAAGCACTGGGGACAATTTCAATGGGGTTCCAAATATTGATCATAGTCAACCTTTTGTTAGAAAGGATATTACTACATGGCTACAGTGGCTTCGCAATACTGTTGGTTTTCAGGATTTTCGATTTGATTTCGCAAGGGGTTATGCAGCTAAATATGTGAAAGAGTATATTGAAGGAGCAAAACCAATTTTTTCCGTTGGGGAGTATTGGGATTCTTGCAACTACAATGGTCATGGTTTGGACCACAACCAAGATAGCCACAGACAGCAGATAATAAGTTGGATTGATGGCACTGGACAGCTATCAACTGCATTTGACTTCACAACCAAGGGAATTCTTCAGGAAGCTGTCAATGGACAATTATGGCGATTACGTGATCCCCAAGGGAAGCCACCAGGTTTAATGGGATGGTGGCCTTCAAGATCTGTCACATTCCTAGATAACCATGATACAGGCTCAACACAGGCTCACTGGCCATTCCCTTCAAATCATATTATGGAGGGTTATGCATATATACTCACGCACCCTGGAATACCTTCCGTTTTCTATGACCACTTCTATGATTCGGGTGATTCCATTCATGATCAGATTGTGAAACTGATCCACATTAGGAAGCAAAAAGACATTCACAGCCGATCATCTGTAAGGATCCTGGAGGCCCAGCCAAACCTCTACTCTGCTATAATTGGGGAGAAAGTGTGCATGAAAATTGGGGATGGTTCATGGTGCCCAGACGTGAGGGAGTGGAAGCTGGCAACCTCTGGCCACAGATATGCGGTTTGGCACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

415

Amino Acids

47.31

Weight (kDa)

7.07

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha-amylase	PF00128	47 - 117	9e-09	Alpha amylase, catalytic domain
Alpha-amyl_C2	PF07821	359 - 414	1.4e-21	Alpha-amylase C-terminal beta-sheet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74510 AT1G74510 AT1G74510
fragaria_vesca	FvH4_5g15231 FvH4_5g15231
malus_domestica	MD14G1197300.v1.1
prunus_persica	Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1
pyrus_communis	pycom06g16900 pycom14g16390
rosa_chinensis	RchiOBHm_Chr1g0373971 RchiOBHm_Chr1g0373981 RchiOBHm_Chr7g0180901
rosa_laevigata	RLG00000005225 RLG00000026789 RLG00000026790
rosa_multiflora	Rmu_sc0002740.1_g000003 Rmu_sc0004056.1_g000009 Rmu_sc0005304.1_g000003 Rmu_sc0006924.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272420 Rroxscaffold_4G00283850
rosa_rugosa	Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437200.1 Rorug06G0437300 Rorug06G0437400 Rorug06G0437500 Rorug06G0437600 Rorug06G0437700
rosa_samantha	Rh7AG038800 Rh7BG038300 Rh7CG039900 Rh7DG038400
rosa_wichuraiana	Rw1G034480 Rw7G003180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1182
AciI	CCGC	1 cut(s)	1232
AclWI	GGATC	5 cut(s)	274, 827, 1051, 1099, 1112
AcoI	YGGCCR	2 cut(s)	929, 1219
AcsI	RAATTY	4 cut(s)	84, 136, 399, 789
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	2 cut(s)	383, 439
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	6 cut(s)	66, 296, 478, 629, 876, 942
AjiI	CACGTC	1 cut(s)	1192
AjnI	CCWGG	3 cut(s)	850, 982, 1107
AluBI	AGCT	4 cut(s)	605, 757, 803, 1207
AluI	AGCT	4 cut(s)	605, 757, 803, 1207
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	5 cut(s)	274, 827, 1051, 1099, 1112
AoxI	GGCC	5 cut(s)	96, 869, 929, 1113, 1219
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	4 cut(s)	84, 136, 399, 789
Asp700I	GAANNNNTTC	1 cut(s)	991
AspS9I	GGNCC	2 cut(s)	697, 1114
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	1037
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	1187
BalI	TGGCCA	2 cut(s)	931, 1221
BamHI	GGATCC	1 cut(s)	1104
BanI	GGYRCC	1 cut(s)	1182
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	5 cut(s)	205, 389, 737, 858, 1166
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	3 cut(s)	852, 984, 1109
BclI	TGATCA	2 cut(s)	496, 1039
BcnI	CCSGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	1 cut(s)	539
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
Bme1390I	CCNGG	4 cut(s)	218, 852, 984, 1109
Bme18I	GGWCC	1 cut(s)	697
BmgBI	CACGTC	1 cut(s)	1192
BmgT120I	GGNCC	2 cut(s)	697, 1114
BmiI	GGNNCC	3 cut(s)	486, 1106, 1184
BmrFI	CCNGG	4 cut(s)	218, 852, 984, 1109
BmrI	ACTGGG	3 cut(s)	115, 458, 474
BmuI	ACTGGG	3 cut(s)	115, 458, 474
BpmI	CTGGAG	1 cut(s)	1130
Bpu10I	CCTNAGC	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	2 cut(s)	71, 830
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	5 cut(s)	216, 364, 783, 838, 982
BsaXI	ACNNNNNCTCC	2 cut(s)	1139, 1169
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	7 cut(s)	110, 131, 445, 453, 469, 754, 932
Bse3DI	GCAATG	2 cut(s)	12, 314
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	3 cut(s)	852, 984, 1109
BseDI	CCNNGG	5 cut(s)	216, 364, 783, 838, 982
BseGI	GGATG	3 cut(s)	421, 869, 1177
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	2 cut(s)	12, 314
BseMII	CTCAG	2 cut(s)	248, 261
BseNI	ACTGG	7 cut(s)	110, 131, 445, 453, 469, 754, 932
BseSI	GKGCMC	1 cut(s)	1187
BseXI	GCAGC	1 cut(s)	614
BseYI	CCCAGC	1 cut(s)	1116
BshFI	GGCC	5 cut(s)	98, 871, 931, 1115, 1221
BshNI	GGYRCC	1 cut(s)	1182
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	2 cut(s)	370, 482
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmFI	GGGAC	2 cut(s)	370, 482
BsnI	GGCC	5 cut(s)	98, 871, 931, 1115, 1221
Bsp1286I	GDGCHC	2 cut(s)	276, 1187
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
BspACI	CCGC	1 cut(s)	1232
BspANI	GGCC	5 cut(s)	98, 871, 931, 1115, 1221
BspCNI	CTCAG	2 cut(s)	247, 262
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	3 cut(s)	486, 1106, 1184
BspPI	GGATC	5 cut(s)	274, 827, 1051, 1099, 1112
BspT107I	GGYRCC	1 cut(s)	1182
BsrDI	GCAATG	2 cut(s)	12, 314
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	7 cut(s)	110, 131, 445, 453, 469, 754, 932
BssECI	CCNNGG	5 cut(s)	216, 364, 783, 838, 982
BssMI	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
BssT1I	CCWWGG	3 cut(s)	364, 783, 838
Bst2UI	CCWGG	3 cut(s)	852, 984, 1109
Bst4CI	ACNGT	2 cut(s)	543, 559
Bst6I	CTCTTC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	381
BstBAI	YACGTR	2 cut(s)	71, 830
BstC8I	GCNNGC	1 cut(s)	1209
BstDEI	CTNAG	3 cut(s)	17, 234, 270
BstEII	GGTNACC	2 cut(s)	11, 224
BstF5I	GGATG	3 cut(s)	421, 869, 1177
BstKTI	GATC	8 cut(s)	269, 499, 835, 881, 1042, 1059, 1094, 1107
BstMBI	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	3 cut(s)	852, 984, 1109
BstNSI	RCATGY	1 cut(s)	425
BstPI	GGTNACC	2 cut(s)	11, 224
BstSCI	CCNGG	4 cut(s)	216, 850, 982, 1107
BstSFI	CTRYAG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	1187
BstSNI	TACGTA	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	614
BstX2I	RGATCY	3 cut(s)	266, 878, 1104
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	3 cut(s)	266, 878, 1104
BsuRI	GGCC	5 cut(s)	98, 871, 931, 1115, 1221
BtrI	CACGTC	1 cut(s)	1192
BtsCI	GGATG	3 cut(s)	421, 869, 1177
BtsIMutI	CAGTG	5 cut(s)	21, 462, 548, 747, 925
Cac8I	GCNNGC	1 cut(s)	1209
CciI	TCATGA	1 cut(s)	1036
Cfr13I	GGNCC	2 cut(s)	697, 1114
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	382, 438
CviQI	GTAC	2 cut(s)	382, 438
DdeI	CTNAG	3 cut(s)	17, 234, 270
DpnI	GATC	8 cut(s)	268, 498, 834, 880, 1041, 1058, 1093, 1106
DpnII	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
EaeI	YGGCCR	2 cut(s)	929, 1219
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco105I	TACGTA	1 cut(s)	71
Eco130I	CCWWGG	3 cut(s)	364, 783, 838
Eco147I	AGGCCT	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	779
Eco91I	GGTNACC	2 cut(s)	11, 224
EcoO65I	GGTNACC	2 cut(s)	11, 224
EcoRI	GAATTC	2 cut(s)	399, 789
EcoRII	CCWGG	3 cut(s)	850, 982, 1107
EcoT14I	CCWWGG	3 cut(s)	364, 783, 838
EcoT22I	ATGCAT	1 cut(s)	967
ErhI	CCWWGG	3 cut(s)	364, 783, 838
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	2 cut(s)	370, 482
FbaI	TGATCA	2 cut(s)	496, 1039
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	3 cut(s)	428, 876, 1184
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	1 cut(s)	893
GluI	GCNGC	1 cut(s)	603
GsaI	CCCAGC	1 cut(s)	1120
GsuI	CTGGAG	1 cut(s)	1130
HaeIII	GGCC	5 cut(s)	98, 871, 931, 1115, 1221
HapII	CCGG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	506
HindII	GTYRAC	1 cut(s)	506
HinfI	GANTC	6 cut(s)	40, 110, 454, 668, 1019, 1028
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	1037
Hpy166II	GTNNAC	3 cut(s)	290, 446, 506
Hpy188I	TCNGA	3 cut(s)	237, 271, 1044
Hpy188III	TCNNGA	7 cut(s)	32, 155, 171, 569, 797, 876, 1037
Hpy8I	GTNNAC	3 cut(s)	290, 446, 506
HpyAV	CCTTC	5 cut(s)	215, 623, 882, 948, 1002
HpyCH4III	ACNGT	2 cut(s)	543, 559
HpyCH4IV	ACGT	3 cut(s)	70, 829, 1191
HpyCH4V	TGCA	6 cut(s)	164, 602, 675, 767, 965, 1158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	3 cut(s)	17, 234, 270
HpySE526I	ACGT	3 cut(s)	70, 829, 1191
Ksp22I	TGATCA	2 cut(s)	496, 1039
Kzo9I	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	1 cut(s)	614
MabI	ACCWGGT	1 cut(s)	850
MaeI	CTAG	1 cut(s)	893
MaeII	ACGT	3 cut(s)	70, 829, 1191
MaeIII	GTNAC	4 cut(s)	11, 224, 427, 883
MalI	GATC	8 cut(s)	268, 498, 834, 880, 1041, 1058, 1093, 1106
MboI	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
MboII	GAAGA	2 cut(s)	90, 785
MflI	RGATCY	3 cut(s)	266, 878, 1104
MhlI	GDGCHC	2 cut(s)	276, 1187
MlsI	TGGCCA	2 cut(s)	931, 1221
MluNI	TGGCCA	2 cut(s)	931, 1221
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	7 cut(s)	239, 243, 949, 1105, 1136, 1188, 1225
Mox20I	TGGCCA	2 cut(s)	931, 1221
Mph1103I	ATGCAT	1 cut(s)	967
MroXI	GAANNNNTTC	1 cut(s)	991
MscI	TGGCCA	2 cut(s)	931, 1221
MseI	TTAA	3 cut(s)	102, 281, 857
MslI	CAYNNNNRTG	4 cut(s)	120, 184, 1014, 1227
Msp20I	TGGCCA	2 cut(s)	931, 1221
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	4 cut(s)	218, 852, 984, 1109
MvaI	CCWGG	3 cut(s)	852, 984, 1109
MwoI	GCNNNNNNNGC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
NlaIV	GGNNCC	3 cut(s)	486, 1106, 1184
NmuCI	GTSAC	2 cut(s)	427, 883
NsiI	ATGCAT	1 cut(s)	967
NspI	RCATGY	1 cut(s)	425
PagI	TCATGA	1 cut(s)	1036
PceI	AGGCCT	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	991
PfeI	GAWTC	6 cut(s)	40, 110, 454, 668, 1019, 1028
PfoI	TCCNGGA	1 cut(s)	1107
PkrI	GCNGC	1 cut(s)	604
Ppu21I	YACGTR	2 cut(s)	71, 830
Psp6I	CCWGG	3 cut(s)	850, 982, 1107
PspEI	GGTNACC	2 cut(s)	11, 224
PspFI	CCCAGC	1 cut(s)	1116
PspGI	CCWGG	3 cut(s)	850, 982, 1107
PspN4I	GGNNCC	3 cut(s)	486, 1106, 1184
PspPI	GGNCC	2 cut(s)	697, 1114
PsuI	RGATCY	3 cut(s)	266, 878, 1104
RsaI	GTAC	2 cut(s)	383, 439
RsaNI	GTAC	2 cut(s)	382, 438
RseI	CAYNNNNRTG	4 cut(s)	120, 184, 1014, 1227
SaqAI	TTAA	3 cut(s)	102, 281, 857
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	8 cut(s)	266, 496, 832, 878, 1039, 1056, 1091, 1104
Sau96I	GGNCC	2 cut(s)	697, 1114
ScrFI	CCNGG	4 cut(s)	218, 852, 984, 1109
SduI	GDGCHC	2 cut(s)	276, 1187
SexAI	ACCWGGT	1 cut(s)	850
SfcI	CTRYAG	1 cut(s)	539
SinI	GGWCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	4 cut(s)	120, 184, 1014, 1227
SnaBI	TACGTA	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	1232
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	1 cut(s)	893
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	4 cut(s)	216, 850, 982, 1107
StyI	CCWWGG	3 cut(s)	364, 783, 838
TaaI	ACNGT	2 cut(s)	543, 559
TaiI	ACGT	3 cut(s)	73, 832, 1194
TaqI	TCGA	2 cut(s)	457, 577
TatI	WGTACW	2 cut(s)	381, 437
TfiI	GAWTC	6 cut(s)	40, 110, 454, 668, 1019, 1028
Tru1I	TTAA	3 cut(s)	102, 281, 857
Tru9I	TTAA	3 cut(s)	102, 281, 857
TscAI	CASTG	5 cut(s)	28, 469, 548, 754, 932
TseFI	GTSAC	2 cut(s)	427, 883
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	2 cut(s)	427, 883
TspDTI	ATGAA	5 cut(s)	317, 432, 1025, 1167, 1175
TspGWI	ACGGA	2 cut(s)	640, 985
TspRI	CASTG	5 cut(s)	28, 469, 548, 754, 932
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	4 cut(s)	84, 136, 399, 789
XceI	RCATGY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	991
XspI	CTAG	1 cut(s)	893
Zsp2I	ATGCAT	1 cut(s)	967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.