Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001960

Physical Location & Seq

Genomic Coordinates Forward (+)

28005264 .. 28007748

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGTTGGAGGCTCCGAGTTATCTGGTGTCAAGGGACTTACCATCTTCATGTGAGGAAGAGAGCAAGTGGATATACAATGCACACTGTGTGCTTCAGCTCTCCCTAAGGAAGCGTTTGTTGGATGATACTGATGTAGAAGGAAGTTCCGCTAAGAAAATGTTACGGGTTGATCATGGAAGCAGAGGTGAATCTGACAAGATTACAGATAGTCTTCAGCTTGCTAAAACCTATCAGAGCTCTAACCAGAGTCAACAAGGTGGTGGTGGTGATCAACAGAGTTCACCAGTTACTCGGCTTGACCAAAACGCGCTTCTCAACTGCTTGGCTCACTGTTCGTTATCTGATTTCGGGTCTATAGCGTCGACGAATAGAACCTTCCGCTCGTTGATTAAGGACAGCGAGTTGTATAGGTTGAGACGGGCAAAGGGTATTGTGGAGCATTGGATTTACTTCTCTTGCAGGCTCTTAGAATGGGAGGCTTATGATCCTAATGGAGATCGCTGGTTACGTGTACCGAAAATGACATTCAACGAGTGTTTCATGTGTTCGGATAAAGAGTCTCTGGCGGTTGGCACCGAGCTTCTTGTTTTCGGAAAAGAGATCATGTCTCATGTGATTTACCGATATAGCATCTTAACCAATACATGGACATCGGGTATGCAAATGAATGTCCCGAGGTGCTTGTTTGGATCAGCGAGTCTAGGCGAGATCGCGGTTATAGCTGGAGGATGTGATCCGCGTGGGAGGATACTGAGTTCTGCAGAGCTTTATAACTCTGAAACTGGGGAATGGACGGTCATCCCGAGCATGAACAAAGCGAGGAAAATGTGCTCGAGCGTGTTCATGGATGGGAATTTCTATTGCATTGGAGGTATCGGAGAGGGAAACTCGAAGATGCTATTGTGCGGTGAAGTCTATGATCTGAAGAAGAAGACATGGACATTGATACCTAACATGTTACCTGAAAGAAGCAGTGGAGGTGGAGGAGATCAAGCAAAAGAGATTGCTGCTGCAACAGCGGCTTCAGAGGCTCCACCGCTTGTAGCAGTTGTAAAAGACGAGCTTTATGCTGCGAATTACGCGCAGCAAGAGGTGAAGAAATACGATAAAAGGCTTAATGTATGGAATAAGGTAGGGAATTTGCCAGAGAGGGCTTCTTCGATGAACGGTTGGGGAATGGCGTTTAGGGCTTGTGGGGATCAGTTAGTGGTGGTTGGAGGACCTAGGGCAATAGGAGGAGGGTTTATAGAGATCAATGCTTGTGTCCCAAGTGAAGGAACACAACTGCATTGGAGAGTTCTTGCTTCTAAGCCATCGGGAAACTTTGTGTATAATTGTGCGGTGATGGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0042579 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

451

Amino Acids

49.65

Weight (kDa)

6.97

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_ATRN-LZTR1	PF24981	150 - 318	1.3e-06	Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7	PF24681	189 - 319	1.6e-07	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin	PF13964	202 - 319	2.2e-09	Calicin, beta-propeller domain
Kelch_1	PF01344	225 - 271	5e-11	Kelch motif
Kelch_FKB95	PF25210	237 - 319	3e-09	FKB95, Kelch-repeats domain
Kelch_1	PF01344	273 - 319	1.6e-07	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74510 AT1G74510 AT1G74510
fragaria_vesca	FvH4_5g15231 FvH4_5g15231
malus_domestica	MD14G1197300.v1.1
prunus_persica	Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1
pyrus_communis	pycom06g16900 pycom14g16390
rosa_chinensis	RchiOBHm_Chr1g0373971 RchiOBHm_Chr1g0373981 RchiOBHm_Chr7g0180901
rosa_laevigata	RLG00000005225 RLG00000026789 RLG00000026790
rosa_multiflora	Rmu_sc0002740.1_g000003 Rmu_sc0004056.1_g000009 Rmu_sc0005304.1_g000003 Rmu_sc0006924.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272420 Rroxscaffold_4G00283850
rosa_rugosa	Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437200.1 Rorug06G0437300 Rorug06G0437400 Rorug06G0437500 Rorug06G0437600 Rorug06G0437700
rosa_samantha	Rh7AG038800 Rh7BG038300 Rh7CG039900 Rh7DG038400
rosa_wichuraiana	Rw1G034480 Rw7G003180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccB1I	GGYRCC	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	645
AccBSI	CCGCTC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	4 cut(s)	308, 713, 739, 1082
AciI	CCGC	9 cut(s)	147, 379, 566, 713, 737, 906, 1019, 1037, 1340
AclWI	GGATC	4 cut(s)	479, 697, 728, 1206
AcsI	RAATTY	2 cut(s)	853, 1138
AcuI	CTGAAG	4 cut(s)	77, 197, 944, 1008
AdeI	CACNNNGTG	2 cut(s)	86, 88
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	2 cut(s)	645, 1274
AflIII	ACRYGT	2 cut(s)	508, 954
AgsI	TTSAA	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 294, 326
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
AluBI	AGCT	7 cut(s)	97, 217, 237, 580, 722, 766, 1063
AluI	AGCT	7 cut(s)	97, 217, 237, 580, 722, 766, 1063
Alw21I	GWGCWC	2 cut(s)	239, 833
Alw26I	GTCTC	3 cut(s)	409, 564, 612
AlwI	GGATC	4 cut(s)	479, 697, 728, 1206
Ama87I	CYCGRG	3 cut(s)	673, 802, 832
ApeKI	GCWGC	4 cut(s)	1007, 1010, 1070, 1084
ApoI	RAATTY	2 cut(s)	853, 1138
AspA2I	CCTAGG	1 cut(s)	1223
AspLEI	GCGC	2 cut(s)	310, 1084
AspS9I	GGNCC	1 cut(s)	1220
AsuHPI	GGTGA	6 cut(s)	197, 273, 278, 920, 1105, 1354
AvaI	CYCGRG	3 cut(s)	673, 802, 832
AvaII	GGWCC	1 cut(s)	1220
AvrII	CCTAGG	1 cut(s)	1223
AxyI	CCTNAGG	1 cut(s)	104
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	203, 938
Bbv12I	GWGCWC	2 cut(s)	239, 833
BbvI	GCAGC	4 cut(s)	994, 997, 1057, 1096
BccI	CCATC	4 cut(s)	49, 842, 1321, 1339
BcgI	CGANNNNNNTGC	2 cut(s)	1049, 1083
BciVI	GTATCC	1 cut(s)	741
BclI	TGATCA	2 cut(s)	169, 268
BcoDI	GTCTC	3 cut(s)	409, 564, 612
BfaI	CTAG	2 cut(s)	701, 1224
BfmI	CTRYAG	2 cut(s)	354, 759
BfuI	GTATCC	1 cut(s)	741
BisI	GCNGC	5 cut(s)	1008, 1011, 1020, 1071, 1085
BlnI	CCTAGG	1 cut(s)	1223
BlsI	GCNGC	5 cut(s)	1009, 1012, 1021, 1072, 1086
Bme18I	GGWCC	1 cut(s)	1220
BmeT110I	CYCGRG	3 cut(s)	673, 802, 832
BmgT120I	GGNCC	1 cut(s)	1220
BmiI	GGNNCC	3 cut(s)	12, 574, 1032
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	2 cut(s)	639, 885
BmuI	ACTGGG	1 cut(s)	792
BpiI	GAAGAC	2 cut(s)	203, 938
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpmI	CTGGAG	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	674, 1223
Bsc4I	CCNNNNNNNGG	2 cut(s)	645, 1274
Bse1I	ACTGG	2 cut(s)	284, 787
Bse21I	CCTNAGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	674, 1223
BseGI	GGATG	5 cut(s)	127, 734, 798, 853, 1355
BseLI	CCNNNNNNNGG	2 cut(s)	645, 1274
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	2 cut(s)	284, 787
BseRI	GAGGAG	2 cut(s)	999, 1251
BseXI	GCAGC	4 cut(s)	994, 997, 1057, 1096
Bsh1236I	CGCG	4 cut(s)	308, 713, 739, 1082
BshNI	GGYRCC	1 cut(s)	572
BsiHKAI	GWGCWC	2 cut(s)	239, 833
BsiHKCI	CYCGRG	3 cut(s)	673, 802, 832
BslFI	GGGAC	3 cut(s)	47, 656, 1250
BslI	CCNNNNNNNGG	2 cut(s)	645, 1274
BsmAI	GTCTC	3 cut(s)	409, 564, 612
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	3 cut(s)	47, 656, 1250
BsoBI	CYCGRG	3 cut(s)	673, 802, 832
Bsp1286I	GDGCHC	2 cut(s)	239, 833
BspACI	CCGC	9 cut(s)	147, 379, 566, 713, 737, 906, 1019, 1037, 1340
BspCNI	CTCAG	1 cut(s)	744
BspFNI	CGCG	4 cut(s)	308, 713, 739, 1082
BspLI	GGNNCC	3 cut(s)	12, 574, 1032
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	4 cut(s)	479, 697, 728, 1206
BspT107I	GGYRCC	1 cut(s)	572
BsrBI	CCGCTC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	284, 787
BssECI	CCNNGG	2 cut(s)	674, 1223
BssT1I	CCWWGG	1 cut(s)	1223
Bst4CI	ACNGT	4 cut(s)	86, 332, 796, 1169
Bst6I	CTCTTC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	219, 461
BstDEI	CTNAG	5 cut(s)	104, 150, 466, 752, 1308
BstF5I	GGATG	5 cut(s)	127, 734, 798, 853, 1355
BstFNI	CGCG	4 cut(s)	308, 713, 739, 1082
BstHHI	GCGC	2 cut(s)	310, 1084
BstMAI	GTCTC	3 cut(s)	409, 564, 612
BstMWI	GCNNNNNNNGC	6 cut(s)	719, 1016, 1019, 1028, 1079, 1187
BstNSI	RCATGY	1 cut(s)	958
BstSFI	CTRYAG	2 cut(s)	354, 759
BstUI	CGCG	4 cut(s)	308, 713, 739, 1082
BstV1I	GCAGC	4 cut(s)	994, 997, 1057, 1096
BstV2I	GAAGAC	2 cut(s)	203, 938
Bsu36I	CCTNAGG	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	741
BtsCI	GGATG	5 cut(s)	127, 734, 798, 853, 1355
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	3 cut(s)	82, 328, 979
Cac8I	GCNNGC	2 cut(s)	219, 461
CfoI	GCGC	2 cut(s)	310, 1084
Cfr13I	GGNCC	1 cut(s)	1220
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	512
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	5 cut(s)	104, 150, 466, 752, 1308
DraIII	CACNNNGTG	2 cut(s)	86, 88
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	1223
Eco24I	GRGCYC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	1220
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	4 cut(s)	77, 197, 944, 1008
Eco81I	CCTNAGG	1 cut(s)	104
Eco88I	CYCGRG	3 cut(s)	673, 802, 832
EcoICRI	GAGCTC	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	1220
EcoT14I	CCWWGG	1 cut(s)	1223
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	1223
Esp3I	CGTCTC	1 cut(s)	409
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	3 cut(s)	47, 656, 1250
FbaI	TGATCA	2 cut(s)	169, 268
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	5 cut(s)	1008, 1011, 1020, 1071, 1085
FokI	GGATG	4 cut(s)	134, 741, 785, 860
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	5 cut(s)	1008, 1011, 1020, 1071, 1085
FspBI	CTAG	2 cut(s)	701, 1224
GlaI	GCGC	2 cut(s)	309, 1083
GluI	GCNGC	5 cut(s)	1008, 1011, 1020, 1071, 1085
GsuI	CTGGAG	1 cut(s)	744
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	2 cut(s)	310, 1084
Hin6I	GCGC	2 cut(s)	308, 1082
HinP1I	GCGC	2 cut(s)	308, 1082
HincII	GTYRAC	2 cut(s)	251, 363
HindII	GTYRAC	2 cut(s)	251, 363
HinfI	GANTC	4 cut(s)	188, 247, 557, 697
HphI	GGTGA	6 cut(s)	197, 273, 278, 920, 1105, 1354
Hpy166II	GTNNAC	4 cut(s)	251, 281, 363, 512
Hpy188III	TCNNGA	3 cut(s)	673, 802, 1317
Hpy8I	GTNNAC	4 cut(s)	251, 281, 363, 512
Hpy99I	CGWCG	2 cut(s)	364, 367
HpyAV	CCTTC	3 cut(s)	131, 385, 1268
HpyCH4III	ACNGT	4 cut(s)	86, 332, 796, 1169
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	7 cut(s)	80, 459, 661, 761, 864, 1013, 1288
HpyF10VI	GCNNNNNNNGC	6 cut(s)	719, 1016, 1019, 1028, 1079, 1187
HpyF3I	CTNAG	5 cut(s)	104, 150, 466, 752, 1308
HpySE526I	ACGT	1 cut(s)	508
HspAI	GCGC	2 cut(s)	308, 1082
Ksp22I	TGATCA	2 cut(s)	169, 268
LmnI	GCTCC	3 cut(s)	16, 436, 1036
Lsp1109I	GCAGC	4 cut(s)	994, 997, 1057, 1096
LweI	GCATC	2 cut(s)	639, 885
MaeI	CTAG	2 cut(s)	701, 1224
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	4 cut(s)	159, 286, 504, 957
MbiI	CCGCTC	1 cut(s)	381
MboII	GAAGA	9 cut(s)	36, 68, 203, 904, 937, 940, 943, 1108, 1149
MhlI	GDGCHC	2 cut(s)	239, 833
MluCI	AATT	4 cut(s)	853, 1075, 1138, 1333
MlyI	GAGTC	3 cut(s)	256, 566, 706
MmeI	TCCRAC	2 cut(s)	99, 1195
MseI	TTAA	3 cut(s)	390, 635, 1116
MslI	CAYNNNNRTG	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	1019
MvnI	CGCG	4 cut(s)	308, 713, 739, 1082
MwoI	GCNNNNNNNGC	6 cut(s)	719, 1016, 1019, 1028, 1079, 1187
NlaIV	GGNNCC	3 cut(s)	12, 574, 1032
NmeAIII	GCCGAG	1 cut(s)	271
NspI	RCATGY	1 cut(s)	958
PaeR7I	CTCGAG	1 cut(s)	832
PciI	ACATGT	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	2 cut(s)	505, 800
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	645
PkrI	GCNGC	5 cut(s)	1009, 1012, 1021, 1072, 1086
PleI	GAGTC	3 cut(s)	255, 565, 705
PpsI	GAGTC	3 cut(s)	255, 565, 705
Ppu21I	YACGTR	1 cut(s)	509
PpuMI	RGGWCCY	1 cut(s)	1220
PscI	ACATGT	1 cut(s)	954
PsiI	TTATAA	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	1220
PspN4I	GGNNCC	3 cut(s)	12, 574, 1032
PspPI	GGNCC	1 cut(s)	1220
PspPPI	RGGWCCY	1 cut(s)	1220
PspXI	VCTCGAGB	1 cut(s)	832
PstI	CTGCAG	1 cut(s)	763
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	239
SalI	GTCGAC	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	390, 635, 1116
SatI	GCNGC	5 cut(s)	1008, 1011, 1020, 1071, 1085
Sau96I	GGNCC	1 cut(s)	1220
SchI	GAGTC	3 cut(s)	256, 566, 706
SduI	GDGCHC	2 cut(s)	239, 833
SfaNI	GCATC	2 cut(s)	639, 885
SfcI	CTRYAG	2 cut(s)	354, 759
Sfr274I	CTCGAG	1 cut(s)	832
SgrDI	CGTCGACG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	1220
SlaI	CTCGAG	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	832
SmoI	CTYRAG	1 cut(s)	832
Sse9I	AATT	4 cut(s)	853, 1075, 1138, 1333
SsiI	CCGC	9 cut(s)	147, 379, 566, 713, 737, 906, 1019, 1037, 1340
SspMI	CTAG	2 cut(s)	701, 1224
SstI	GAGCTC	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	1223
TaaI	ACNGT	4 cut(s)	86, 332, 796, 1169
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	4 cut(s)	362, 833, 890, 1160
TasI	AATT	4 cut(s)	853, 1075, 1138, 1333
TauI	GCSGC	1 cut(s)	1022
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	390, 635, 1116
Tru9I	TTAA	3 cut(s)	390, 635, 1116
TscAI	CASTG	3 cut(s)	89, 335, 979
TseI	GCWGC	4 cut(s)	1007, 1010, 1070, 1084
TspDTI	ATGAA	6 cut(s)	36, 529, 680, 824, 832, 1178
TspRI	CASTG	3 cut(s)	89, 335, 979
Van91I	CCANNNNNTGG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	1220
XapI	RAATTY	2 cut(s)	853, 1138
XceI	RCATGY	1 cut(s)	958
XhoI	CTCGAG	1 cut(s)	832
XmaJI	CCTAGG	1 cut(s)	1223
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	2 cut(s)	701, 1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.