RchiOBHm_Chr7g0180901

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
2678438 .. 2682244
3807 bp
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UTR
Exon/CDS
Intron
PRQ16134

Sequence Viewer

Length: 1275 bp
ATGACCAGAATCCTGCTCTTTCCCATGCCAACTGTGACCATCCAAATGACCAAAATCTTGCTCCTTCCAATGCCCAATCTGACCTGCCGAATGACCAGAAGTCTTGCTCATTCCCAGGCCGAATCTGACCAGCCAAATGCCCAGAATCTTGCTCTTTCTGATGCCAACTCTGACCAGCCAAATGACCAGAATCAGGACGGGAACAACAATGACCCCACTTCACTATTCCACCAACTTGGAAGGGATGTCTCAATAAACTGTCTCCTTCGTTGTTCAAGGGCTGATTACGGCTCAGTTGCCATGCTGTGTAGGAGTTTCCGTTCTCTAATTCGGACTGGGGAGCTGTACACTCTGAGGCGGAGAATGGGTATTGTAGAACATTGGGCTTACTTCTCTTGTGCTCTCTCTGAATGGTGGGCATTTAATCCAGATCGTAGACATTGGATGCCTTTGCCTAAAATGGAAATAAATGGATGTTTTATGTGTTCAGATAAGGAGTCTGTAGCCGTTGGCACCGAACTTCTTGTATTTGGAAAGGAAATAATGTCCCATGTGGTTTACAAATACAGCCTTTTGACACACAGCTGGTCATCCGGCCGTTTGATGAATACACCTAGGTGCTTGTTCGCTTCTGCTAGCAGTGGGGAAATTGCCATTCTAGCTGGCGGTTGCGATCCATGTGGCAATATCTTGAGCACTGCTGAGCTTTACAATTCAGAAACAGGAACTTGGTTGACTCTTCCGAGCATGAATAAACCTAGAAAAATGTGTTCTGGGGTATTTATGGATGGAAAACTTTATGTCATTGGCGGGATTGGAGTGGGCAGCCCAAATGCACTTAGCTGTGGGGAGGTTTATGATTTGGAGAGGGGGACTTGGACTGAGATACCTAACATGCACCCTAGAAAAAATGGAGGGGCTGGAGCAACTGATATGCCTGCTACAGCTGAGGCACCTCCGCTGCTTGCAGTTGTAAATAACAAACTGTATGCTGCAGATTATGCAGAACAGGAGGTGAGAAAATATGATAAGGAGAGAAAAGTGTGGGTTACCATTGGGAGATTGCCTGAGCGGACATCCTCGATGAATGGTTGGGGAGTAGCATTTCGGGCATGTGGGAATCGGTTAATTGTAATCGGTGGACCTAGGGGTTCAAGCGTAGGGCAAATTGAAGTCAATTCTTGGGTCCCTGATGAAGGTCCGCCGCAGTGGAACCTGCTCGCTATAAAGGATCGGGGAGGCTTTGTCTATAATTGTGCAGTGATGGGATGCTGA

Protein Analysis

424

Amino Acids

46.82

Weight (kDa)

7.87

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_ATRN-LZTR1 PF24981 135 - 300 1.5e-07 Attractin/LZTR1 beta-propeller
Kelch_KLHDC2_KLHL20_DRC7 PF24681 167 - 381 1.2e-07 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 182 - 300 5.3e-08 Calicin, beta-propeller domain
Kelch_1 PF01344 205 - 251 7.8e-09 Kelch motif
Kelch_FKB95 PF25210 229 - 298 4.6e-10 FKB95, Kelch-repeats domain
Kelch_1 PF01344 253 - 299 1e-12 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 92, 1224
AccB1I GGYRCC 2 cut(s) 512, 952
AccBSI CCGCTC 1 cut(s) 1072
AccI GTMKAC 1 cut(s) 436
AciI CCGC 7 cut(s) 358, 666, 810, 959, 1072, 1202, 1205
AclWI GGATC 2 cut(s) 668, 1239
AcoI YGGCCR 1 cut(s) 595
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 193, 1196
AgsI TTSAA 3 cut(s) 276, 1155, 1172
AhdI GACNNNNNGTC 1 cut(s) 99
AjnI CCWGG 1 cut(s) 114
AleI CACNNNNGTG 1 cut(s) 616
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 6 cut(s) 343, 585, 662, 706, 843, 947
AluI AGCT 6 cut(s) 343, 585, 662, 706, 843, 947
Alw21I GWGCWC 2 cut(s) 403, 698
Alw26I GTCTC 2 cut(s) 253, 266
AlwI GGATC 2 cut(s) 668, 1239
AoxI GGCC 2 cut(s) 117, 595
ApeKI GCWGC 3 cut(s) 825, 961, 992
AspA2I CCTAGG 2 cut(s) 614, 1145
AspS9I GGNCC 3 cut(s) 1142, 1186, 1199
AsuHPI GGTGA 1 cut(s) 1027
AsuNHI GCTAGC 1 cut(s) 635
AvaII GGWCC 3 cut(s) 1142, 1186, 1199
AvrII CCTAGG 2 cut(s) 614, 1145
BanI GGYRCC 2 cut(s) 512, 952
Bbv12I GWGCWC 2 cut(s) 403, 698
BbvCI CCTCAGC 1 cut(s) 948
BbvI GCAGC 3 cut(s) 837, 948, 979
BccI CCATC 3 cut(s) 47, 782, 1258
BceAI ACGGC 3 cut(s) 304, 491, 582
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 2 cut(s) 253, 266
BfaI CTAG 6 cut(s) 615, 636, 659, 759, 903, 1146
BfmI CTRYAG 3 cut(s) 501, 942, 993
BfuAI ACCTGC 2 cut(s) 92, 1224
BisI GCNGC 4 cut(s) 826, 962, 993, 1205
BlnI CCTAGG 2 cut(s) 614, 1145
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 4 cut(s) 827, 963, 994, 1206
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 3 cut(s) 1142, 1186, 1199
BmeRI GACNNNNNGTC 1 cut(s) 99
BmgT120I GGNCC 3 cut(s) 1142, 1186, 1199
BmiI GGNNCC 5 cut(s) 514, 954, 1187, 1188, 1214
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 345
BmsI GCATC 3 cut(s) 151, 435, 1259
BmtI GCTAGC 1 cut(s) 639
BmuI ACTGGG 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 942
Bpu10I CCTNAGC 2 cut(s) 948, 1068
Bpu1102I GCTNAGC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 712
BsaJI CCNNGG 3 cut(s) 114, 614, 1145
BsaXI ACNNNNNCTCC 6 cut(s) 304, 334, 352, 382, 1230, 1260
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 1196
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 114, 614, 1145
BseGI GGATG 8 cut(s) 39, 250, 450, 479, 590, 793, 1076, 1274
BseLI CCNNNNNNNGG 2 cut(s) 193, 1196
BseMII CTCAG 6 cut(s) 306, 344, 693, 873, 939, 1059
BseNI ACTGG 1 cut(s) 340
BseX3I CGGCCG 1 cut(s) 595
BseXI GCAGC 3 cut(s) 837, 948, 979
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 119, 597
BshNI GGYRCC 2 cut(s) 512, 952
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 2 cut(s) 403, 698
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 3 cut(s) 532, 886, 1172
BslI CCNNNNNNNGG 2 cut(s) 193, 1196
BsmAI GTCTC 2 cut(s) 253, 266
BsmFI GGGAC 3 cut(s) 532, 886, 1172
BsnI GGCC 2 cut(s) 119, 597
Bsp1286I GDGCHC 2 cut(s) 403, 698
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 3 cut(s) 430, 673, 1231
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 7 cut(s) 358, 666, 810, 959, 1072, 1202, 1205
BspANI GGCC 2 cut(s) 119, 597
BspCNI CTCAG 6 cut(s) 305, 345, 694, 874, 940, 1060
BspLI GGNNCC 5 cut(s) 514, 954, 1187, 1188, 1214
BspMAI CTGCAG 1 cut(s) 997
BspMI ACCTGC 2 cut(s) 92, 1224
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 2 cut(s) 668, 1239
BspT107I GGYRCC 2 cut(s) 512, 952
BsrBI CCGCTC 1 cut(s) 1072
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 114, 614, 1145
BssMI GATC 3 cut(s) 430, 673, 1231
BssT1I CCWWGG 2 cut(s) 614, 1145
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 34, 260, 987
Bst6I CTCTTC 1 cut(s) 744
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 5 cut(s) 637, 664, 939, 966, 1221
BstDEI CTNAG 7 cut(s) 292, 353, 702, 839, 882, 948, 1068
BstEII GGTNACC 1 cut(s) 1048
BstENI CCTNNNNNAGG 1 cut(s) 1194
BstF5I GGATG 8 cut(s) 39, 250, 450, 479, 590, 793, 1076, 1274
BstKTI GATC 3 cut(s) 433, 676, 1234
BstMAI GTCTC 2 cut(s) 253, 266
BstMBI GATC 3 cut(s) 430, 673, 1231
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 3 cut(s) 659, 1001, 1109
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 2 cut(s) 898, 1116
BstPI GGTNACC 1 cut(s) 1048
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 3 cut(s) 501, 942, 993
BstV1I GCAGC 3 cut(s) 837, 948, 979
BstXI CCANNNNNNTGG 1 cut(s) 236
BstZI CGGCCG 1 cut(s) 595
BsuRI GGCC 2 cut(s) 119, 597
BtsCI GGATG 8 cut(s) 39, 250, 450, 479, 590, 793, 1076, 1274
BtsI GCAGTG 4 cut(s) 646, 696, 1214, 1266
BtsIMutI CAGTG 4 cut(s) 646, 696, 1214, 1266
BveI ACCTGC 2 cut(s) 92, 1224
Cac8I GCNNGC 5 cut(s) 637, 664, 939, 966, 1221
Cfr13I GGNCC 3 cut(s) 1142, 1186, 1199
Csp6I GTAC 1 cut(s) 346
CviAII CATG 7 cut(s) 25, 301, 551, 678, 748, 895, 1113
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 7 cut(s) 292, 353, 702, 839, 882, 948, 1068
DpnI GATC 3 cut(s) 432, 675, 1233
DpnII GATC 3 cut(s) 430, 673, 1231
DriI GACNNNNNGTC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 595
EagI CGGCCG 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 744
Eam1105I GACNNNNNGTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 744
EciI GGCGGA 2 cut(s) 373, 1191
EclXI CGGCCG 1 cut(s) 595
Eco130I CCWWGG 2 cut(s) 614, 1145
Eco47I GGWCC 3 cut(s) 1142, 1186, 1199
Eco52I CGGCCG 1 cut(s) 595
Eco91I GGTNACC 1 cut(s) 1048
EcoNI CCTNNNNNAGG 1 cut(s) 1194
EcoO109I RGGNCCY 1 cut(s) 1186
EcoO65I GGTNACC 1 cut(s) 1048
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 2 cut(s) 614, 1145
ErhI CCWWGG 2 cut(s) 614, 1145
FaeI CATG 7 cut(s) 28, 304, 554, 681, 751, 898, 1116
FaqI GGGAC 3 cut(s) 532, 886, 1172
FatI CATG 7 cut(s) 24, 300, 550, 677, 747, 894, 1112
FauI CCCGC 1 cut(s) 803
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 4 cut(s) 826, 962, 993, 1205
FokI GGATG 7 cut(s) 26, 257, 457, 486, 577, 800, 1063
Fsp4HI GCNGC 4 cut(s) 826, 962, 993, 1205
FspBI CTAG 6 cut(s) 615, 636, 659, 759, 903, 1146
GluI GCNGC 4 cut(s) 826, 962, 993, 1205
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 2 cut(s) 119, 597
HapII CCGG 1 cut(s) 594
Hin1II CATG 7 cut(s) 28, 304, 554, 681, 751, 898, 1116
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 7 cut(s) 9, 122, 145, 190, 497, 736, 1120
HpaII CCGG 1 cut(s) 594
HphI GGTGA 1 cut(s) 1027
Hpy166II GTNNAC 5 cut(s) 348, 437, 559, 735, 1142
Hpy188III TCNNGA 3 cut(s) 194, 428, 691
Hpy8I GTNNAC 5 cut(s) 348, 437, 559, 735, 1142
HpyAV CCTTC 4 cut(s) 74, 234, 275, 1190
HpyCH4III ACNGT 3 cut(s) 34, 260, 987
HpyCH4V TGCA 6 cut(s) 836, 898, 968, 995, 1004, 1259
HpyF10VI GCNNNNNNNGC 3 cut(s) 659, 1001, 1109
HpyF3I CTNAG 7 cut(s) 292, 353, 702, 839, 882, 948, 1068
Hsp92II CATG 7 cut(s) 28, 304, 554, 681, 751, 898, 1116
KflI GGGWCCC 1 cut(s) 1186
Kzo9I GATC 3 cut(s) 430, 673, 1231
LmnI GCTCC 3 cut(s) 66, 340, 923
Lsp1109I GCAGC 3 cut(s) 837, 948, 979
LweI GCATC 3 cut(s) 151, 435, 1259
MaeI CTAG 6 cut(s) 615, 636, 659, 759, 903, 1146
MaeIII GTNAC 2 cut(s) 34, 1048
MalI GATC 3 cut(s) 432, 675, 1233
MbiI CCGCTC 1 cut(s) 1072
MboI GATC 3 cut(s) 430, 673, 1231
MboII GAAGA 1 cut(s) 731
MhlI GDGCHC 2 cut(s) 403, 698
MluCI AATT 7 cut(s) 327, 648, 712, 1128, 1167, 1177, 1252
MlyI GAGTC 2 cut(s) 506, 730
MnlI CCTC 9 cut(s) 348, 844, 861, 908, 943, 966, 1006, 1090, 1232
MseI TTAA 2 cut(s) 423, 1127
MslI CAYNNNNRTG 2 cut(s) 44, 616
MspA1I CMGCKG 3 cut(s) 585, 947, 961
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 659, 1001, 1109
NdeII GATC 3 cut(s) 430, 673, 1231
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 7 cut(s) 28, 304, 554, 681, 751, 898, 1116
NlaIV GGNNCC 5 cut(s) 514, 954, 1187, 1188, 1214
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 898, 1116
OliI CACNNNNGTG 1 cut(s) 616
PfeI GAWTC 5 cut(s) 9, 122, 145, 190, 1120
PkrI GCNGC 4 cut(s) 827, 963, 994, 1206
PleI GAGTC 2 cut(s) 505, 730
PpsI GAGTC 2 cut(s) 505, 730
PpuMI RGGWCCY 1 cut(s) 1186
Psp5II RGGWCCY 1 cut(s) 1186
Psp6I CCWGG 1 cut(s) 114
PspEI GGTNACC 1 cut(s) 1048
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 5 cut(s) 514, 954, 1187, 1188, 1214
PspPI GGNCC 3 cut(s) 1142, 1186, 1199
PspPPI RGGWCCY 1 cut(s) 1186
PstI CTGCAG 1 cut(s) 997
PvuII CAGCTG 2 cut(s) 585, 947
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 44, 616
SaqAI TTAA 2 cut(s) 423, 1127
SatI GCNGC 4 cut(s) 826, 962, 993, 1205
Sau3AI GATC 3 cut(s) 430, 673, 1231
Sau96I GGNCC 3 cut(s) 1142, 1186, 1199
SchI GAGTC 2 cut(s) 506, 730
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 2 cut(s) 403, 698
SfaNI GCATC 3 cut(s) 151, 435, 1259
SfcI CTRYAG 3 cut(s) 501, 942, 993
SinI GGWCC 3 cut(s) 1142, 1186, 1199
SmiMI CAYNNNNRTG 2 cut(s) 44, 616
SmlI CTYRAG 1 cut(s) 691
SmoI CTYRAG 1 cut(s) 691
Sse9I AATT 7 cut(s) 327, 648, 712, 1128, 1167, 1177, 1252
SsiI CCGC 7 cut(s) 358, 666, 810, 959, 1072, 1202, 1205
SspMI CTAG 6 cut(s) 615, 636, 659, 759, 903, 1146
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 2 cut(s) 614, 1145
TaaI ACNGT 3 cut(s) 34, 260, 987
TaqI TCGA 1 cut(s) 1082
TasI AATT 7 cut(s) 327, 648, 712, 1128, 1167, 1177, 1252
TatI WGTACW 1 cut(s) 345
TauI GCSGC 1 cut(s) 1207
TfiI GAWTC 5 cut(s) 9, 122, 145, 190, 1120
Tru1I TTAA 2 cut(s) 423, 1127
Tru9I TTAA 2 cut(s) 423, 1127
TscAI CASTG 4 cut(s) 646, 703, 1214, 1266
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 3 cut(s) 825, 961, 992
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 620, 764, 1100, 1209
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 4 cut(s) 646, 703, 1214, 1266
VpaK11BI GGWCC 3 cut(s) 1142, 1186, 1199
XagI CCTNNNNNAGG 1 cut(s) 1194
XceI RCATGY 2 cut(s) 898, 1116
XmaJI CCTAGG 2 cut(s) 614, 1145
XmiI GTMKAC 1 cut(s) 436
XspI CTAG 6 cut(s) 615, 636, 659, 759, 903, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.