Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001960

Physical Location & Seq

Genomic Coordinates Forward (+)

57116170 .. 57116799

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAAGATCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAAGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATTAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGATCATGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

209

Amino Acids

23.2

Weight (kDa)

8.77

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	1.2e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74510 AT1G74510 AT1G74510
fragaria_vesca	FvH4_5g15231 FvH4_5g15231
malus_domestica	MD14G1197300.v1.1
prunus_persica	Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1
pyrus_communis	pycom06g16900 pycom14g16390
rosa_chinensis	RchiOBHm_Chr1g0373971 RchiOBHm_Chr1g0373981 RchiOBHm_Chr7g0180901
rosa_laevigata	RLG00000005225 RLG00000026789 RLG00000026790
rosa_multiflora	Rmu_sc0002740.1_g000003 Rmu_sc0004056.1_g000009 Rmu_sc0005304.1_g000003 Rmu_sc0006924.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272420 Rroxscaffold_4G00283850
rosa_rugosa	Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437200.1 Rorug06G0437300 Rorug06G0437400 Rorug06G0437500 Rorug06G0437600 Rorug06G0437700
rosa_samantha	Rh7AG038800 Rh7BG038300 Rh7CG039900 Rh7DG038400
rosa_wichuraiana	Rw1G034480 Rw7G003180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 394
Acc36I	ACCTGC	3 cut(s)	78, 160, 394
AccIII	TCCGGA	1 cut(s)	618
AciI	CCGC	2 cut(s)	82, 625
AclWI	GGATC	4 cut(s)	188, 363, 382, 460
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	220, 473
AluBI	AGCT	4 cut(s)	193, 404, 580, 605
AluI	AGCT	4 cut(s)	193, 404, 580, 605
Alw21I	GWGCWC	1 cut(s)	582
AlwI	GGATC	4 cut(s)	188, 363, 382, 460
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	618
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 512
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 424, 530
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 394
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	2 cut(s)	51, 625
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	2 cut(s)	52, 626
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	6, 155, 623
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	618
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 619
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	300, 582
Bsp13I	TCCGGA	1 cut(s)	618
Bsp143I	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	2 cut(s)	82, 625
BspCNI	CTCAG	1 cut(s)	594
BspEI	TCCGGA	1 cut(s)	618
BspLI	GGNNCC	3 cut(s)	6, 155, 623
BspMI	ACCTGC	3 cut(s)	78, 160, 394
BspPI	GGATC	4 cut(s)	188, 363, 382, 460
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
Bst4CI	ACNGT	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	8 cut(s)	109, 130, 183, 213, 358, 377, 455, 550
BstMBI	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	4 cut(s)	127, 180, 374, 452
BstYI	RGATCY	4 cut(s)	127, 180, 374, 452
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 394
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	9 cut(s)	70, 293, 301, 350, 463, 493, 497, 520, 551
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	8 cut(s)	108, 129, 182, 212, 357, 376, 454, 549
DpnII	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
Ecl136II	GAGCTC	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	582
FaeI	CATG	9 cut(s)	73, 296, 304, 353, 466, 496, 500, 523, 554
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	9 cut(s)	69, 292, 300, 349, 462, 492, 496, 519, 550
Fnu4HI	GCNGC	2 cut(s)	51, 625
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	2 cut(s)	51, 625
GluI	GCNGC	2 cut(s)	51, 625
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 619
Hin1II	CATG	9 cut(s)	73, 296, 304, 353, 466, 496, 500, 523, 554
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	2 cut(s)	54, 619
HphI	GGTGA	2 cut(s)	335, 512
Hpy166II	GTNNAC	2 cut(s)	244, 279
Hpy188I	TCNGA	3 cut(s)	111, 286, 535
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 619
Hpy8I	GTNNAC	2 cut(s)	244, 279
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	9 cut(s)	73, 296, 304, 353, 466, 496, 500, 523, 554
Kpn2I	TCCGGA	1 cut(s)	618
Kzo9I	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
LmnI	GCTCC	2 cut(s)	84, 621
LpnPI	CCDG	9 cut(s)	29, 67, 73, 155, 203, 390, 399, 591, 604
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	8 cut(s)	108, 129, 182, 212, 357, 376, 454, 549
MboI	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
MboII	GAAGA	5 cut(s)	280, 283, 369, 390, 535
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	4 cut(s)	127, 180, 374, 452
MhlI	GDGCHC	2 cut(s)	300, 582
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 346, 492, 496, 533, 589
Mph1103I	ATGCAT	1 cut(s)	498
MroI	TCCGGA	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	366, 420
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	3 cut(s)	193, 404, 627
MspI	CCGG	2 cut(s)	54, 619
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
NlaIII	CATG	9 cut(s)	73, 296, 304, 353, 466, 496, 500, 523, 554
NlaIV	GGNNCC	3 cut(s)	6, 155, 623
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	73
PaqCI	CACCTGC	2 cut(s)	78, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	94, 117
PkrI	GCNGC	2 cut(s)	52, 626
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 623
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	4 cut(s)	127, 180, 374, 452
PvuII	CAGCTG	2 cut(s)	193, 404
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	366, 420
SatI	GCNGC	2 cut(s)	51, 625
Sau3AI	GATC	8 cut(s)	106, 127, 180, 210, 355, 374, 452, 547
Sau96I	GGNCC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	300, 582
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	82, 625
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	627
TfiI	GAWTC	2 cut(s)	94, 117
Tru1I	TTAA	2 cut(s)	366, 420
Tru9I	TTAA	2 cut(s)	366, 420
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	281, 473, 536
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.