Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001960

Physical Location & Seq

Genomic Coordinates Reverse (-)

57125338 .. 57126905

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0437500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCCACTGATTGGACCCAGCTCCCACCGGAACTGGTAGAATCAATCTCCAAAAAGCTCAAAATCTATGCAGACTATCTCCGATTCCGAGTCGTCTGTCACAGCTGGCAAGCCTCTGTTCCCAAAACTCCAAACCACCTACCTCCTCAGCTCCCATGGCTTATGCTCCCCCAATCCCAACCCAACCAATCACACCGCGCCTTTTACAACCTCTCCAACAGCAGAGTCCACTTCCTCCACCTTCCAGAAGCTTCTCACCGCAAGCGCCGCTGCGGCTCCTCCCACGGCTGGCTTGTGATCCTCGACGAAACCCCCTCCGTCCTCCTTGTAAACCCCCTGACACGTGGCAAGCGCCACCTCCCTCCGCTGTCCACCTTCCCTAATGTTGTTAGTTTCGATTACTCCCAAATTGGGCGGGAATATGTGCTTCGGTCCCTGTCCGGCGAGCTCTACACGCGCAGCTTGATCCAAATGCGTGATTCCTTTGTGAAGAAGCTGGTGCTGTCTTTGAGTCCAATGGAAGAAAACGGTTTTATTGCCCTGACGATTGTGAATCAGACCGGTGACTTGGCGTTTTGTAGGGAGGGGGACGAGAATTGGAGTTTCATAGATGAAGCAAGATGTTATTCAGAGGATGCCATTTCTTTCAATGGCTTGTTTTACGCGGTTGATAATCATGGCATTGTTGCAGAGTGCGATGTGAAAGGTCCGTCCCCTGTTGTTAGGATCATCCAAACGCCGAGATTGGATGATGCAGATATGAGGTATTTGGTGAATTCAGGGGCTGATTTGTTGTTGCTTAGCAGGTATTTGGATGTTGATCATGATATTGTGAACGATGATGCAAATGTGAATTACAGAACTGTGGGATTCGATGTTTTTAGGATGAATTGGATGGGGCCGAGGTGGGAGAAGGTTGAGAACTTGGGTGATAGGATGCTGTTTATTGGGGAAAACTCGTCATTTTCATTGTCGGCATCTGATTTTCCAGGATGTGTGGGGAATTGTATCTATTTTACGGATGATTACTCCGAGTTGAACTATGAAAGTGGAGTTGGGGGATATGATTCTGGCATTTTCAGATTATGGGATGGAACGATTCAGGAATTGCCCCCTTATCCAAGGAATTCAAATTACCAGGTACATTGGCCTCCCGGCTCTCTACCGCTTTGGGTTATCCCCAATCCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

397

Amino Acids

45.26

Weight (kDa)

5.47

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	68 - 356	1.2e-67	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74510 AT1G74510 AT1G74510
fragaria_vesca	FvH4_5g15231 FvH4_5g15231
malus_domestica	MD14G1197300.v1.1
prunus_persica	Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1
pyrus_communis	pycom06g16900 pycom14g16390
rosa_chinensis	RchiOBHm_Chr1g0373971 RchiOBHm_Chr1g0373981 RchiOBHm_Chr7g0180901
rosa_laevigata	RLG00000005225 RLG00000026789 RLG00000026790
rosa_multiflora	Rmu_sc0002740.1_g000003 Rmu_sc0004056.1_g000009 Rmu_sc0005304.1_g000003 Rmu_sc0006924.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272420 Rroxscaffold_4G00283850
rosa_rugosa	Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437200.1 Rorug06G0437300 Rorug06G0437400 Rorug06G0437500 Rorug06G0437600 Rorug06G0437700
rosa_samantha	Rh7AG038800 Rh7BG038300 Rh7CG039900 Rh7DG038400
rosa_wichuraiana	Rw1G034480 Rw7G003180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	795
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccII	CGCG	3 cut(s)	198, 457, 665
AciI	CCGC	8 cut(s)	196, 259, 268, 273, 365, 415, 665, 1166
AclWI	GGATC	3 cut(s)	292, 460, 734
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	775, 1126
AcvI	CACGTG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	1143
AfiI	CCNNNNNNNGG	3 cut(s)	12, 288, 411
AflIII	ACRYGT	1 cut(s)	341
AgeI	ACCGGT	1 cut(s)	560
AgsI	TTSAA	3 cut(s)	649, 1039, 1131
AjnI	CCWGG	2 cut(s)	988, 1137
AjuI	GAANNNNNNNTTGG	2 cut(s)	1038, 1070
AluBI	AGCT	8 cut(s)	22, 58, 105, 151, 251, 448, 462, 496
AluI	AGCT	8 cut(s)	22, 58, 105, 151, 251, 448, 462, 496
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	3 cut(s)	292, 460, 734
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	3 cut(s)	3, 899, 1148
ApeKI	GCWGC	2 cut(s)	270, 459
ApoI	RAATTY	2 cut(s)	775, 1126
AsiGI	ACCGGT	1 cut(s)	560
AspLEI	GCGC	4 cut(s)	200, 267, 354, 459
AspS9I	GGNCC	4 cut(s)	15, 432, 707, 899
AsuC2I	CCSGG	1 cut(s)	1155
AsuHPI	GGTGA	4 cut(s)	248, 575, 784, 941
AvaII	GGWCC	3 cut(s)	15, 432, 707
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	450
BbrPI	CACGTG	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	257, 471
BccI	CCATC	2 cut(s)	889, 1085
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	990, 1139
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	1155
BfoI	RGCGCY	2 cut(s)	268, 355
BfuAI	ACCTGC	1 cut(s)	795
BglI	GCCNNNNNGGC	1 cut(s)	273
BisI	GCNGC	4 cut(s)	268, 271, 274, 460
BlpI	GCTNAGC	1 cut(s)	800
BlsI	GCNGC	4 cut(s)	269, 272, 275, 461
Bme1390I	CCNGG	3 cut(s)	990, 1139, 1155
Bme18I	GGWCC	3 cut(s)	15, 432, 707
BmgT120I	GGNCC	4 cut(s)	15, 432, 707, 899
BmiI	GGNNCC	4 cut(s)	17, 277, 434, 900
BmrFI	CCNGG	3 cut(s)	990, 1139, 1155
BmsI	GCATC	5 cut(s)	625, 742, 832, 927, 986
Bpu10I	CCTNAGC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	1155
BsaAI	YACGTR	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	819
BsaJI	CCNNGG	4 cut(s)	155, 283, 902, 1121
BsaWI	WCCGGW	2 cut(s)	28, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 288, 411
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	990, 1139
BseDI	CCNNGG	4 cut(s)	155, 283, 902, 1121
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	3 cut(s)	12, 288, 411
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	39
BseRI	GAGGAG	2 cut(s)	135, 268
BseXI	GCAGC	2 cut(s)	257, 471
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	3 cut(s)	198, 457, 665
BshFI	GGCC	3 cut(s)	5, 901, 1150
BshTI	ACCGGT	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	4 cut(s)	29, 441, 561, 1155
BslFI	GGGAC	3 cut(s)	418, 602, 697
BslI	CCNNNNNNNGG	3 cut(s)	12, 288, 411
BsmFI	GGGAC	3 cut(s)	418, 602, 697
BsnI	GGCC	3 cut(s)	5, 901, 1150
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	297, 465, 726, 820
Bsp1720I	GCTNAGC	1 cut(s)	800
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	8 cut(s)	196, 259, 268, 273, 365, 415, 665, 1166
BspANI	GGCC	3 cut(s)	5, 901, 1150
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	3 cut(s)	198, 457, 665
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	4 cut(s)	17, 277, 434, 900
BspMI	ACCTGC	1 cut(s)	795
BspPI	GGATC	3 cut(s)	292, 460, 734
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	4 cut(s)	155, 283, 902, 1121
BssMI	GATC	4 cut(s)	297, 465, 726, 820
BssT1I	CCWWGG	2 cut(s)	155, 1121
Bst2UI	CCWGG	2 cut(s)	990, 1139
Bst4CI	ACNGT	2 cut(s)	530, 865
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	6 cut(s)	107, 111, 263, 290, 350, 446
BstDEI	CTNAG	2 cut(s)	147, 800
BstDSI	CCRYGG	2 cut(s)	155, 283
BstFNI	CGCG	3 cut(s)	198, 457, 665
BstH2I	RGCGCY	2 cut(s)	268, 355
BstHHI	GCGC	4 cut(s)	200, 267, 354, 459
BstKTI	GATC	4 cut(s)	300, 468, 729, 823
BstMBI	GATC	4 cut(s)	297, 465, 726, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 267, 273, 454
BstNI	CCWGG	2 cut(s)	990, 1139
BstSCI	CCNGG	3 cut(s)	988, 1137, 1153
BstUI	CGCG	3 cut(s)	198, 457, 665
BstV1I	GCAGC	2 cut(s)	257, 471
BsuRI	GGCC	3 cut(s)	5, 901, 1150
BtgI	CCRYGG	2 cut(s)	155, 283
BtgZI	GCGATG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	795
Cac8I	GCNNGC	6 cut(s)	107, 111, 263, 290, 350, 446
CaiI	CAGNNNCTG	1 cut(s)	785
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	4 cut(s)	200, 267, 354, 459
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	4 cut(s)	15, 432, 707, 899
CsiI	ACCWGGT	1 cut(s)	1137
Csp6I	GTAC	1 cut(s)	1142
CspAI	ACCGGT	1 cut(s)	560
CviAII	CATG	4 cut(s)	156, 677, 824, 1188
CviQI	GTAC	1 cut(s)	1142
DdeI	CTNAG	2 cut(s)	147, 800
DpnI	GATC	4 cut(s)	299, 467, 728, 822
DpnII	GATC	4 cut(s)	297, 465, 726, 820
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	155, 1121
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	3 cut(s)	15, 432, 707
Eco53kI	GAGCTC	1 cut(s)	448
Eco72I	CACGTG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	448
EcoRI	GAATTC	2 cut(s)	775, 1126
EcoRII	CCWGG	2 cut(s)	988, 1137
EcoT14I	CCWWGG	2 cut(s)	155, 1121
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	155, 1121
FaeI	CATG	4 cut(s)	159, 680, 827, 1191
FaqI	GGGAC	3 cut(s)	418, 602, 697
FatI	CATG	4 cut(s)	155, 676, 823, 1187
FauI	CCCGC	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	4 cut(s)	268, 271, 274, 460
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	4 cut(s)	268, 271, 274, 460
GlaI	GCGC	4 cut(s)	199, 266, 353, 458
GluI	GCNGC	4 cut(s)	268, 271, 274, 460
GsaI	CCCAGC	1 cut(s)	22
HaeII	RGCGCY	2 cut(s)	268, 355
HaeIII	GGCC	3 cut(s)	5, 901, 1150
HapII	CCGG	4 cut(s)	29, 441, 561, 1155
HhaI	GCGC	4 cut(s)	200, 267, 354, 459
Hin1II	CATG	4 cut(s)	159, 680, 827, 1191
Hin6I	GCGC	4 cut(s)	198, 265, 352, 457
HinP1I	GCGC	4 cut(s)	198, 265, 352, 457
HindIII	AAGCTT	1 cut(s)	249
HpaII	CCGG	4 cut(s)	29, 441, 561, 1155
HphI	GGTGA	4 cut(s)	248, 575, 784, 941
Hpy166II	GTNNAC	4 cut(s)	229, 331, 372, 835
Hpy188I	TCNGA	7 cut(s)	83, 89, 558, 631, 982, 1033, 1082
Hpy188III	TCNNGA	3 cut(s)	245, 824, 1103
Hpy8I	GTNNAC	4 cut(s)	229, 331, 372, 835
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	251, 385, 907
HpyCH4III	ACNGT	2 cut(s)	530, 865
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	71, 689, 755, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 267, 273, 454
HpyF3I	CTNAG	2 cut(s)	147, 800
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	159, 680, 827, 1191
HspAI	GCGC	4 cut(s)	198, 265, 352, 457
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	4 cut(s)	297, 465, 726, 820
LmnI	GCTCC	4 cut(s)	27, 156, 171, 281
Lsp1109I	GCAGC	2 cut(s)	257, 471
LweI	GCATC	5 cut(s)	625, 742, 832, 927, 986
MabI	ACCWGGT	1 cut(s)	1137
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	98, 563
MalI	GATC	4 cut(s)	299, 467, 728, 822
MboI	GATC	4 cut(s)	297, 465, 726, 820
MboII	GAAGA	2 cut(s)	502, 533
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	9 cut(s)	408, 595, 775, 853, 889, 1003, 1106, 1126, 1132
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	99, 234, 520
MmeI	TCCRAC	1 cut(s)	240
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	105, 270, 367
MspI	CCGG	4 cut(s)	29, 441, 561, 1155
MspR9I	CCNGG	3 cut(s)	990, 1139, 1155
MvaI	CCWGG	2 cut(s)	990, 1139
MvnI	CGCG	3 cut(s)	198, 457, 665
MwoI	GCNNNNNNNGC	4 cut(s)	157, 267, 273, 454
NciI	CCSGG	1 cut(s)	1155
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	297, 465, 726, 820
NlaIII	CATG	4 cut(s)	159, 680, 827, 1191
NlaIV	GGNNCC	4 cut(s)	17, 277, 434, 900
NmeAIII	GCCGAG	2 cut(s)	765, 927
NmuCI	GTSAC	2 cut(s)	98, 563
PagI	TCATGA	1 cut(s)	823
PfeI	GAWTC	7 cut(s)	41, 84, 479, 553, 870, 1067, 1099
PflMI	CCANNNNNTGG	1 cut(s)	12
PfoI	TCCNGGA	1 cut(s)	988
PinAI	ACCGGT	1 cut(s)	560
PkrI	GCNGC	4 cut(s)	269, 272, 275, 461
PleI	GAGTC	3 cut(s)	98, 233, 519
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	3 cut(s)	98, 233, 519
Ppu21I	YACGTR	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	988, 1137
PspCI	CACGTG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	988, 1137
PspN4I	GGNNCC	4 cut(s)	17, 277, 434, 900
PspPI	GGNCC	4 cut(s)	15, 432, 707, 899
PstNI	CAGNNNCTG	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	1143
RsaNI	GTAC	1 cut(s)	1142
SacI	GAGCTC	1 cut(s)	450
SatI	GCNGC	4 cut(s)	268, 271, 274, 460
Sau3AI	GATC	4 cut(s)	297, 465, 726, 820
Sau96I	GGNCC	4 cut(s)	15, 432, 707, 899
SchI	GAGTC	3 cut(s)	99, 234, 520
ScrFI	CCNGG	3 cut(s)	990, 1139, 1155
SduI	GDGCHC	1 cut(s)	450
SexAI	ACCWGGT	1 cut(s)	1137
SfaNI	GCATC	5 cut(s)	625, 742, 832, 927, 986
SinI	GGWCC	3 cut(s)	15, 432, 707
Sse9I	AATT	9 cut(s)	408, 595, 775, 853, 889, 1003, 1106, 1126, 1132
SsiI	CCGC	8 cut(s)	196, 259, 268, 273, 365, 415, 665, 1166
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	988, 1137, 1153
StyI	CCWWGG	2 cut(s)	155, 1121
TaaI	ACNGT	2 cut(s)	530, 865
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	3 cut(s)	303, 396, 873
TaqII	GACCGA	1 cut(s)	420
TasI	AATT	9 cut(s)	408, 595, 775, 853, 889, 1003, 1106, 1126, 1132
TauI	GCSGC	2 cut(s)	270, 276
TfiI	GAWTC	7 cut(s)	41, 84, 479, 553, 870, 1067, 1099
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	98, 563
TseI	GCWGC	2 cut(s)	270, 459
Tsp45I	GTSAC	2 cut(s)	98, 563
TspDTI	ATGAA	5 cut(s)	595, 627, 902, 957, 1059
TspGWI	ACGGA	3 cut(s)	307, 699, 1034
TspRI	CASTG	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	3 cut(s)	15, 432, 707
XapI	RAATTY	2 cut(s)	775, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.