Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001960

Physical Location & Seq

Genomic Coordinates Forward (+)

57123219 .. 57124462

Gene Structure 1244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0437400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGACTCTCCCTCTGCAGCACTCTCTCTATCAGACCAACAGCAAATGAAGGTGATAGAGAAACTAGAAGTTTTCAAGATCCAGGGCCGAGACAAGCTTGGCCGAAAGGTTCTTCGCATCGTCGGAAAGTCTCTTCCAGCTCGTAGTGTAAGCAAAGAGGCTCTGAATGAGTACTTGAAGGAGAAAATCTTCCCAAAATTAGAGGAAAAGCCGTTTTCAATCGTCTACGTGCACACTGATGTTAATCGCAGCGAAAACTTCCCCGGAATTTCTACCCTCCGATCTATCTACGAGGCTATTCCGGTGAACGTGAAGGATAATCTCGAAGCTGTCTACTTTGTCCACCCGGGCTTGCAGGCCAGACTCTTCCTCGCCACCTTTGGCCGTCTCCTCTTCACCGGAGGGTTGTACAGGAAGGTGAACTATGTGACGAGGCTGGAGTTTCTGTGGGATCACGTGAGGCGGAATGAAATGGAGATACCGGAGTTTGTGTACGATTACGACGAGGAGCTGGAGTACCGTCCGATGATGGACTATGGGATAGAGAGTGACCATCCTAGAGTGTATGGTGCACCACCTGCTATGGACTCGTCCGTATCCATCTACTCCATGCGCTGTATCGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

208

Amino Acids

24.05

Weight (kDa)

6.45

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_2	PF13716	34 - 170	1.2e-38	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74510 AT1G74510 AT1G74510
fragaria_vesca	FvH4_5g15231 FvH4_5g15231
malus_domestica	MD14G1197300.v1.1
prunus_persica	Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1 Prupe.5G189400_v2.0.a1
pyrus_communis	pycom06g16900 pycom14g16390
rosa_chinensis	RchiOBHm_Chr1g0373971 RchiOBHm_Chr1g0373981 RchiOBHm_Chr7g0180901
rosa_laevigata	RLG00000005225 RLG00000026789 RLG00000026790
rosa_multiflora	Rmu_sc0002740.1_g000003 Rmu_sc0004056.1_g000009 Rmu_sc0005304.1_g000003 Rmu_sc0006924.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272420 Rroxscaffold_4G00283850
rosa_rugosa	Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437100 Rorug06G0437200.1 Rorug06G0437300 Rorug06G0437400 Rorug06G0437500 Rorug06G0437600 Rorug06G0437700
rosa_samantha	Rh7AG038800 Rh7BG038300 Rh7CG039900 Rh7DG038400
rosa_wichuraiana	Rw1G034480 Rw7G003180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	586
AccI	GTMKAC	2 cut(s)	225, 333
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	2 cut(s)	73, 459
AcoI	YGGCCR	2 cut(s)	100, 382
AcsI	RAATTY	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	457
AfaI	GTAC	4 cut(s)	173, 410, 494, 518
AgsI	TTSAA	3 cut(s)	76, 178, 219
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	4 cut(s)	97, 140, 329, 511
AluI	AGCT	4 cut(s)	97, 140, 329, 511
Alw21I	GWGCWC	2 cut(s)	234, 574
Alw26I	GTCTC	3 cut(s)	84, 135, 392
Alw44I	GTGCAC	2 cut(s)	230, 570
AlwI	GGATC	2 cut(s)	73, 459
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	4 cut(s)	85, 100, 357, 382
ApaLI	GTGCAC	2 cut(s)	230, 570
ApeKI	GCWGC	2 cut(s)	17, 249
ApoI	RAATTY	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	3 cut(s)	264, 347, 348
AsuHPI	GGTGA	4 cut(s)	64, 316, 388, 430
AvaI	CYCGRG	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	234, 574
BaeI	ACNNNNGTAYC	2 cut(s)	470, 503
BbrPI	CACGTG	1 cut(s)	457
Bbv12I	GWGCWC	2 cut(s)	234, 574
BbvI	GCAGC	2 cut(s)	29, 261
BccI	CCATC	3 cut(s)	523, 561, 608
BceAI	ACGGC	2 cut(s)	196, 369
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	607
BcnI	CCSGG	3 cut(s)	264, 347, 348
BcoDI	GTCTC	3 cut(s)	84, 135, 392
BfaI	CTAG	2 cut(s)	65, 558
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	586
BfuI	GTATCC	1 cut(s)	607
BisI	GCNGC	2 cut(s)	18, 250
BlsI	GCNGC	2 cut(s)	19, 251
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	4 cut(s)	83, 264, 347, 348
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	85
BmrFI	CCNGG	4 cut(s)	83, 264, 347, 348
BmsI	GCATC	1 cut(s)	126
BpmI	CTGGAG	2 cut(s)	458, 533
BpuMI	CCSGG	3 cut(s)	264, 347, 348
BsaAI	YACGTR	2 cut(s)	229, 457
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	82, 262, 346
BsaWI	WCCGGW	3 cut(s)	301, 398, 481
BsaXI	ACNNNNNCTCC	6 cut(s)	431, 461, 476, 500, 506, 530
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	82, 262, 346
BseGI	GGATG	1 cut(s)	553
BseJI	GATNNNNATC	1 cut(s)	243
BseRI	GAGGAG	2 cut(s)	380, 521
BseSI	GKGCMC	2 cut(s)	234, 574
BseXI	GCAGC	2 cut(s)	29, 261
BshFI	GGCC	4 cut(s)	87, 102, 359, 384
BsiHKAI	GWGCWC	2 cut(s)	234, 574
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	5 cut(s)	264, 302, 347, 399, 482
BsmAI	GTCTC	3 cut(s)	84, 135, 392
BsmBI	CGTCTC	1 cut(s)	392
BsnI	GGCC	4 cut(s)	87, 102, 359, 384
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	234, 574
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	78, 281, 451
BspACI	CCGC	1 cut(s)	463
BspANI	GGCC	4 cut(s)	87, 102, 359, 384
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	2 cut(s)	73, 459
BsrGI	TGTACA	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	82, 262, 346
BssMI	GATC	3 cut(s)	78, 281, 451
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	521
Bst6I	CTCTTC	3 cut(s)	138, 371, 398
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	2 cut(s)	229, 457
BstC8I	GCNNGC	2 cut(s)	353, 357
BstF5I	GGATG	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	615
BstKTI	GATC	3 cut(s)	81, 284, 454
BstMAI	GTCTC	3 cut(s)	84, 135, 392
BstMBI	GATC	3 cut(s)	78, 281, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	4 cut(s)	81, 262, 345, 346
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	2 cut(s)	234, 574
BstV1I	GCAGC	2 cut(s)	29, 261
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	4 cut(s)	87, 102, 359, 384
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	1 cut(s)	234
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	353, 357
CfoI	GCGC	1 cut(s)	615
Cfr13I	GGNCC	1 cut(s)	85
Cfr9I	CCCGGG	1 cut(s)	346
Csp6I	GTAC	4 cut(s)	172, 409, 493, 517
CviAII	CATG	1 cut(s)	610
CviQI	GTAC	4 cut(s)	172, 409, 493, 517
DpnI	GATC	3 cut(s)	80, 283, 453
DpnII	GATC	3 cut(s)	78, 281, 451
EaeI	YGGCCR	2 cut(s)	100, 382
Eam1104I	CTCTTC	3 cut(s)	138, 371, 398
EarI	CTCTTC	3 cut(s)	138, 371, 398
EciI	GGCGGA	1 cut(s)	478
Eco72I	CACGTG	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	613
FaiI	YATR	5 cut(s)	426, 537, 567, 584, 611
FatI	CATG	1 cut(s)	609
FblI	GTMKAC	2 cut(s)	225, 333
Fnu4HI	GCNGC	2 cut(s)	18, 250
FokI	GGATG	1 cut(s)	540
Fsp4HI	GCNGC	2 cut(s)	18, 250
FspBI	CTAG	2 cut(s)	65, 558
GlaI	GCGC	1 cut(s)	614
GluI	GCNGC	2 cut(s)	18, 250
GsuI	CTGGAG	2 cut(s)	458, 533
HaeIII	GGCC	4 cut(s)	87, 102, 359, 384
HapII	CCGG	5 cut(s)	264, 302, 347, 399, 482
HhaI	GCGC	1 cut(s)	615
Hin1II	CATG	1 cut(s)	613
Hin6I	GCGC	1 cut(s)	613
HinP1I	GCGC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	3 cut(s)	5, 363, 587
HpaII	CCGG	5 cut(s)	264, 302, 347, 399, 482
HphI	GGTGA	4 cut(s)	64, 316, 388, 430
Hpy166II	GTNNAC	8 cut(s)	226, 232, 307, 334, 343, 421, 493, 572
Hpy188I	TCNGA	6 cut(s)	34, 125, 165, 281, 525, 623
Hpy188III	TCNNGA	2 cut(s)	76, 323
Hpy8I	GTNNAC	8 cut(s)	226, 232, 307, 334, 343, 421, 493, 572
Hpy99I	CGWCG	2 cut(s)	125, 506
HpyAV	CCTTC	4 cut(s)	43, 172, 307, 409
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	3 cut(s)	228, 309, 456
HpyCH4V	TGCA	4 cut(s)	17, 232, 355, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpySE526I	ACGT	3 cut(s)	228, 309, 456
Hsp92II	CATG	1 cut(s)	613
HspAI	GCGC	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	78, 281, 451
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	2 cut(s)	29, 261
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	2 cut(s)	65, 558
MaeII	ACGT	3 cut(s)	228, 309, 456
MaeIII	GTNAC	2 cut(s)	427, 548
MalI	GATC	3 cut(s)	80, 283, 453
MboI	GATC	3 cut(s)	78, 281, 451
MboII	GAAGA	5 cut(s)	104, 125, 181, 358, 385
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	234, 574
MluCI	AATT	2 cut(s)	197, 267
MlyI	GAGTC	2 cut(s)	357, 581
MmeI	TCCRAC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	5 cut(s)	264, 302, 347, 399, 482
MspR9I	CCNGG	4 cut(s)	83, 264, 347, 348
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	3 cut(s)	264, 347, 348
NdeII	GATC	3 cut(s)	78, 281, 451
NlaIII	CATG	1 cut(s)	613
NmeAIII	GCCGAG	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	427, 548
PaqCI	CACCTGC	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	19, 251
PleI	GAGTC	2 cut(s)	357, 581
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
PpsI	GAGTC	2 cut(s)	357, 581
Ppu21I	YACGTR	2 cut(s)	229, 457
Psp6I	CCWGG	1 cut(s)	81
PspCI	CACGTG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	4 cut(s)	173, 410, 494, 518
RsaNI	GTAC	4 cut(s)	172, 409, 493, 517
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	18, 250
Sau3AI	GATC	3 cut(s)	78, 281, 451
Sau96I	GGNCC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	2 cut(s)	357, 581
ScrFI	CCNGG	4 cut(s)	83, 264, 347, 348
SduI	GDGCHC	2 cut(s)	234, 574
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	15
SmaI	CCCGGG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	2 cut(s)	197, 267
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	2 cut(s)	65, 558
StyD4I	CCNGG	4 cut(s)	81, 262, 345, 346
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	3 cut(s)	231, 312, 459
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	197, 267
TatI	WGTACW	2 cut(s)	171, 408
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	2 cut(s)	427, 548
TseI	GCWGC	2 cut(s)	17, 249
Tsp45I	GTSAC	2 cut(s)	427, 548
TspDTI	ATGAA	2 cut(s)	62, 483
TspGWI	ACGGA	1 cut(s)	583
TspMI	CCCGGG	1 cut(s)	346
TspRI	CASTG	1 cut(s)	241
VneI	GTGCAC	2 cut(s)	230, 570
XapI	RAATTY	1 cut(s)	267
XmaI	CCCGGG	1 cut(s)	346
XmiI	GTMKAC	2 cut(s)	225, 333
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	2 cut(s)	65, 558
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.