Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028441.1

Orthogroup ID

OG0009457

Physical Location & Seq

Genomic Coordinates Reverse (-)

1999 .. 3387

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028441.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atggatgaactattgcaaccattggttgatgaagcaatgttaactgggtacagttgcagagaagaatggatttctggaatggtttcctccttatcgatgtacttggcaaaagagatattcccaaaatacgctcaacccgatgaggatggtgtaatgggtactcaggaacaggctaaaatatcttggcttcatcttgtggacttgatgatatcttttgataaacaaatcaagtctctgatagaacattctggaatcttactttcatttgaggacgacggtaacttcgtaaaggcttcttctcttaatgttttctgtgatcgaccagactggcttgatttatgggcagagatagaattaagtgatatactagataagttgaaacttgaaactggcgatgagagaaattggacagtgaaagtccaaggagcaggtcttttgtctgacgctgaagatcacaaagctcctgcaatttccagtgcttatcttcgatgcctatcatctgtggttgatcgttgccgatcattgcctagaatctctatgaggtcaaggtttctcagattagctgggggacctgttatacacaaatttttagactgcttactctttaggtgtcaagaagctgaaggtctgactgccttgacagacaatgatgctttgatcaaagttgccaactccattaatgctgctcgctacttcgaatctgttttgaaggaatggtgtgaggacgtctttttccttgaaattgggtcaaatcaatacgaccaaccaggaatgtcaatgggtgagcaagatggtaatgtagatccagttgaaggtcttgaaagtggtattttctacaaagacattgtaaagttggaggagtttagaacagagtgggcagaaaaaatttctgttgttatattgaggggattcgatgctgaatgtcgagattatgtgaagaacagaaggcagtggcaggaaaagggtgaggacggttggacagtatctaagtatttagttggtgctcttgattatttgcaaggtaaagtattggtggtagaagtaaatttgaatgcagtagactttgttggggtatggagaagtttggcagctgggatagatcgattgtttttcaatggtattctaatgagcaatgcaaggtttcacgatggaggagttgagaggtttggtagggatttagaggttttatttggggcatttggggcttggtgtttgagacccgagggtttcttccctagagtaagtgagggcttgaagctgttgaaaattggagaagaggaacttcaaaatagtttggctggagagacatggatgaaggaaagagggatcagacatttgagcgtggccgaggcagagaagattgtgaagagtagggtatttacaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

462

Amino Acids

52.25

Weight (kDa)

4.82

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47700
fragaria_vesca	FvH4_5g15230 FvH4_5g15230 FvH4_5g15230
malus_domestica	MD06G1190600.v1.1 MD14G1197500.v1.1
prunus_persica	Prupe.5G189500_v2.0.a1
pyrus_communis	pycom06g16910 pycom14g16400
rosa_chinensis	RchiOBHm_Chr7g0180931
rosa_laevigata	RLG00000005224
rosa_multiflora	Rmu_co8437493.1_g000001 Rmu_sc0004056.1_g000008 Rmu_sc0028441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272410
rosa_rugosa	Rorug06G0437700 Rorug06G0437700
rosa_samantha	Rh7AG039100 Rh7BG038400 Rh7CG040100 Rh7DG038500
rosa_wichuraiana	Rw7G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	729
Acc36I	ACCTGC	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	1059
AclWI	GGATC	2 cut(s)	797, 1334
AcoI	YGGCCR	1 cut(s)	1344
AcsI	RAATTY	3 cut(s)	584, 885, 1045
AcuI	CTGAAG	2 cut(s)	468, 642
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	3 cut(s)	50, 101, 160
AfiI	CCNNNNNNNGG	1 cut(s)	812
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	5 cut(s)	461, 563, 620, 1091, 1258
AluI	AGCT	5 cut(s)	461, 563, 620, 1091, 1258
Alw21I	GWGCWC	1 cut(s)	1006
Alw26I	GTCTC	3 cut(s)	237, 1210, 1298
AlwI	GGATC	2 cut(s)	797, 1334
Ama87I	CYCGRG	1 cut(s)	1220
AoxI	GGCC	1 cut(s)	1344
ApeKI	GCWGC	2 cut(s)	683, 1088
ApoI	RAATTY	3 cut(s)	584, 885, 1045
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AseI	ATTAAT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	2 cut(s)	794, 977
AsuII	TTCGAA	1 cut(s)	696
AvaI	CYCGRG	1 cut(s)	1220
AvaII	GGWCC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	1006
BbvI	GCAGC	2 cut(s)	670, 1100
BccI	CCATC	3 cut(s)	140, 785, 1142
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	3 cut(s)	237, 1210, 1298
BfaI	CTAG	3 cut(s)	368, 528, 1236
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	2 cut(s)	684, 1089
BlsI	GCNGC	2 cut(s)	685, 1090
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	1220
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	479, 640, 904
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	1320
Bpu14I	TTCGAA	1 cut(s)	696
Bsa29I	ATCGAT	2 cut(s)	95, 1102
BsaBI	GATNNNNATC	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	726
BsaI	GGTCTC	1 cut(s)	1210
BsaJI	CCNNGG	3 cut(s)	421, 1221, 1347
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse1I	ACTGG	5 cut(s)	49, 332, 394, 474, 806
Bse3DI	GCAATG	3 cut(s)	42, 521, 1138
Bse8I	GATNNNNATC	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	768
BseCI	ATCGAT	2 cut(s)	95, 1102
BseDI	CCNNGG	3 cut(s)	421, 1221, 1347
BseGI	GGATG	3 cut(s)	10, 151, 1317
BseJI	GATNNNNATC	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMI	GCAATG	3 cut(s)	42, 521, 1138
BseMII	CTCAG	2 cut(s)	176, 568
BseNI	ACTGG	5 cut(s)	49, 332, 394, 474, 806
BseRI	GAGGAG	2 cut(s)	872, 1167
BseXI	GCAGC	2 cut(s)	670, 1100
BseYI	CCCAGC	2 cut(s)	563, 1091
BshFI	GGCC	1 cut(s)	1346
BshVI	ATCGAT	2 cut(s)	95, 1102
BsiHKAI	GWGCWC	1 cut(s)	1006
BsiHKCI	CYCGRG	1 cut(s)	1220
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmAI	GTCTC	3 cut(s)	237, 1210, 1298
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	1 cut(s)	1346
Bso31I	GGTCTC	1 cut(s)	1210
BsoBI	CYCGRG	1 cut(s)	1220
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	1 cut(s)	1006
Bsp143I	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
BspANI	GGCC	1 cut(s)	1346
BspCNI	CTCAG	2 cut(s)	175, 567
BspDI	ATCGAT	2 cut(s)	95, 1102
BspLI	GGNNCC	1 cut(s)	570
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	2 cut(s)	797, 1334
BspT104I	TTCGAA	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	1210
BsrDI	GCAATG	3 cut(s)	42, 521, 1138
BsrI	ACTGG	5 cut(s)	49, 332, 394, 474, 806
BssECI	CCNNGG	3 cut(s)	421, 1221, 1347
BssMI	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
BssNI	GRCGYC	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	5 cut(s)	53, 278, 412, 974, 982
Bst6I	CTCTTC	2 cut(s)	1269, 1361
BstACI	GRCGYC	1 cut(s)	726
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	3 cut(s)	162, 554, 987
BstF5I	GGATG	3 cut(s)	10, 151, 1317
BstKTI	GATC	8 cut(s)	319, 454, 511, 521, 660, 805, 1102, 1329
BstMAI	GTCTC	3 cut(s)	237, 1210, 1298
BstMBI	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
BstMWI	GCNNNNNNNGC	1 cut(s)	1202
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstV1I	GCAGC	2 cut(s)	670, 1100
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
Bsu15I	ATCGAT	2 cut(s)	95, 1102
BsuRI	GGCC	1 cut(s)	1346
BsuTUI	ATCGAT	2 cut(s)	95, 1102
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	10, 151, 1317
BtsI	GCAGTG	1 cut(s)	956
BtsIMutI	CAGTG	3 cut(s)	417, 481, 956
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	569
ClaI	ATCGAT	2 cut(s)	95, 1102
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	49, 100, 159
CviAII	CATG	1 cut(s)	1308
CviQI	GTAC	3 cut(s)	49, 100, 159
DdeI	CTNAG	3 cut(s)	162, 554, 987
DpnI	GATC	8 cut(s)	318, 453, 510, 520, 659, 804, 1101, 1328
DpnII	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
EaeI	YGGCCR	1 cut(s)	1344
Eam1104I	CTCTTC	2 cut(s)	1269, 1361
EarI	CTCTTC	2 cut(s)	1269, 1361
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	1210
Eco32I	GATATC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	468, 642
Eco88I	CYCGRG	1 cut(s)	1220
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	766
EcoRV	GATATC	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	1 cut(s)	1311
FaiI	YATR	8 cut(s)	340, 365, 539, 578, 899, 933, 1075, 1309
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	1 cut(s)	1307
FbaI	TGATCA	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	1059
Fnu4HI	GCNGC	2 cut(s)	684, 1089
FokI	GGATG	3 cut(s)	17, 158, 1324
Fsp4HI	GCNGC	2 cut(s)	684, 1089
FspBI	CTAG	3 cut(s)	368, 528, 1236
GluI	GCNGC	2 cut(s)	684, 1089
GsaI	CCCAGC	2 cut(s)	567, 1095
GsuI	CTGGAG	1 cut(s)	1320
HaeIII	GGCC	1 cut(s)	1346
HgaI	GACGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	1 cut(s)	1311
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	4 cut(s)	252, 531, 698, 909
HpaI	GTTAAC	1 cut(s)	42
HphI	GGTGA	2 cut(s)	794, 977
Hpy166II	GTNNAC	3 cut(s)	42, 199, 1060
Hpy188I	TCNGA	5 cut(s)	237, 442, 557, 630, 1331
Hpy188III	TCNNGA	8 cut(s)	75, 164, 249, 614, 818, 926, 1007, 1145
Hpy8I	GTNNAC	3 cut(s)	42, 199, 1060
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	617, 703, 806, 939, 1309
HpyCH4III	ACNGT	5 cut(s)	53, 278, 412, 974, 982
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	6 cut(s)	16, 57, 467, 1018, 1055, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1202
HpyF3I	CTNAG	3 cut(s)	162, 554, 987
HpySE526I	ACGT	1 cut(s)	726
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	1 cut(s)	1311
Ksp22I	TGATCA	1 cut(s)	657
KspAI	GTTAAC	1 cut(s)	42
Kzo9I	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
LmnI	GCTCC	2 cut(s)	425, 466
Lsp1109I	GCAGC	2 cut(s)	670, 1100
LweI	GCATC	3 cut(s)	479, 640, 904
MaeI	CTAG	3 cut(s)	368, 528, 1236
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	8 cut(s)	318, 453, 510, 520, 659, 804, 1101, 1328
MboI	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
MboII	GAAGA	9 cut(s)	74, 288, 461, 476, 949, 1222, 1286, 1369, 1378
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	1006
MluCI	AATT	8 cut(s)	353, 403, 468, 584, 741, 885, 1045, 1266
MmeI	TCCRAC	2 cut(s)	834, 956
MroXI	GAANNNNTTC	1 cut(s)	82
MseI	TTAA	4 cut(s)	41, 303, 356, 678
MspA1I	CMGCKG	1 cut(s)	1091
MspR9I	CCNGG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	1057
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	1202
NdeII	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
NlaIII	CATG	1 cut(s)	1311
NlaIV	GGNNCC	1 cut(s)	570
NmeAIII	GCCGAG	1 cut(s)	1372
NspV	TTCGAA	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 282
PctI	GAATGC	1 cut(s)	1057
PdmI	GAANNNNTTC	1 cut(s)	82
PfeI	GAWTC	4 cut(s)	252, 531, 698, 909
PkrI	GCNGC	2 cut(s)	685, 1090
PpuMI	RGGWCCY	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	678
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	2 cut(s)	563, 1091
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	569
PspPPI	RGGWCCY	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	802
PvuII	CAGCTG	1 cut(s)	1091
RsaI	GTAC	3 cut(s)	50, 101, 160
RsaNI	GTAC	3 cut(s)	49, 100, 159
SaqAI	TTAA	4 cut(s)	41, 303, 356, 678
SatI	GCNGC	2 cut(s)	684, 1089
Sau3AI	GATC	8 cut(s)	316, 451, 508, 518, 657, 802, 1099, 1326
Sau96I	GGNCC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	1 cut(s)	1006
SfaNI	GCATC	3 cut(s)	479, 640, 904
SfuI	TTCGAA	1 cut(s)	696
SinI	GGWCC	1 cut(s)	569
Sse9I	AATT	8 cut(s)	353, 403, 468, 584, 741, 885, 1045, 1266
SspMI	CTAG	3 cut(s)	368, 528, 1236
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	5 cut(s)	53, 278, 412, 974, 982
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	7 cut(s)	95, 319, 487, 696, 912, 925, 1102
TasI	AATT	8 cut(s)	353, 403, 468, 584, 741, 885, 1045, 1266
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	4 cut(s)	252, 531, 698, 909
Tru1I	TTAA	4 cut(s)	41, 303, 356, 678
Tru9I	TTAA	4 cut(s)	41, 303, 356, 678
TscAI	CASTG	3 cut(s)	417, 481, 956
TseI	GCWGC	2 cut(s)	683, 1088
TspDTI	ATGAA	5 cut(s)	21, 45, 179, 252, 1328
TspRI	CASTG	3 cut(s)	417, 481, 956
VpaK11BI	GGWCC	1 cut(s)	569
VspI	ATTAAT	1 cut(s)	678
XapI	RAATTY	3 cut(s)	584, 885, 1045
XmiI	GTMKAC	1 cut(s)	1059
XmnI	GAANNNNTTC	1 cut(s)	82
XspI	CTAG	3 cut(s)	368, 528, 1236
ZraI	GACGTC	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.