Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009457

Physical Location & Seq

Genomic Coordinates Forward (+)

2688702 .. 2691958

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG040100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGACTCGGTGGTCCAGTCTCCGCTGCCTCCGGCGTCGGTCCTCTCGCCCTCGATCCTCTCCTTCCTCAACAACAAGCTCCGGACCGATCAAAATCTCAGCCAGGCTCCGACTCTCCTCTCGGAGCTCCAGGCCCAGTGCGGCGACTTGGATCAAGCCCTTATCGACCTCAATCGGAGCCTCGGATCCTCTCTCCTAGCTTACGCTTCCGTCTCCGATCGCGCCCGCGGCTTCTTGAGCCTCATCGATTCGCAATTGACCGGTCTCGAATCTTCTACTCGCTCCCGCAGCTCGGATGGAGAAGGAGGAGTGGAGCAGATATTGGGGGAGGAGCTGCCGGCACTGGCGAAGGAAGTAGCTAGGGTTGAGTCGGTGAGAACATATGCAGAGACAGCATTGAAGCTTCAAACTATGATTGGTGATATTGAAGATGCTGTATCTTCCACCATGAAGAAAAACTCATGGAAGCATTCCTTGAAACAGAATTCTGAAGAACTGCGTTTGGTTTCTATTAAAACCCTTAAACTGACAGAAGACATGTTAACTTCAGTTACAAAGACGCACCCTCAATGGGCGCATCTTGTGTCAGCAGTTGATCATAGAGTAGATAGGGCTCTGGCCATTCTAAGGCCCCAGGCTATAGCAGATCACAGGGCACTTCTTACTTCCCTTGGATGGCCACCACCTCTTTCCTCAACTCCAGATTCAGGGAGATCAAATGATGTTCAAAATCCTCTTTTCACAATGCAAGGAGACCTTAAAGACCAGTACTGTGAAAACTTTCTTGCCCTCTGCAGCCTACAGGAGTTGCAAAGACGAAGAAAATTGCGACAACTTGAGGGATATAATCGCAAACTTGCTCTGTACCAGCCACTTTGGGTGATTGAAGAGCTTGTAAATCCCATAGCATTGGCATCCCAACGCCATTTCTCAAAATGGATCGACAAGCCAGAATTTATATTTGCTCTTGTCTACAAGATCACCAGGGATTATGTTGACTCTATGGATGAGCTATTGCAACCATTGGTTGATGAAGCAATGTTAACCGGGTACAGTTGCAGAGAAGAATGGATTTCTGGAATGGTTTCCTCCTTATCGACATTCTTGGCAAAAGAGATATTCCCAAAATACGCTCAACCCGATGAGGATGGTGTAATGGGTACTCAGGAACAGGCTAAAATATCTTGGCTTCATCTTGTGGACTTGATGATATCTTTTGATAAACAAATCAAGTCTCTGATAGAACATTCTGGAATCTTACTTTCATTTGAGGACGATGGTAACTTCGTAAAGGCTTCTTCTCTTAATGTTTTCTGTGATCGACCCGACTGGCTTGATTTATGGGCAGAGATAGAATTAAGTGATATACTAGATAAGTTGAAACTTGAAATTGGCGATGAGAGAAATTGGACAGTGAAAGTCCAAGGAGCAGGTCTTTTGTCTGACGCTGAAGATCACAAAGCTCCTGCAATTTCCAGTGCTTATCTTCGATGCCTATCATCTGTGGTTGATCGTTGTCGATCATTGCCTAGAATCTCTATGAGGTCAAGGTTTCTCAGATTAGCTGGGGGACCTGTTATACACAAATTTTTAGACTGCTTACTCTTTAGGTGTCAAGAAGCTGAAGGTCTGACTGCCTTGACGGACAATGATGCTTTGATCAAAGTTGCCAACTCCATTAATGCTGCTCGCTACTTCGAATCTGTTTTGAAGGAATGGTGTGAGGACGTCTTTTTCCTTGAAATTGGGTCAAATCAATACGACCAACCAGGAATGTCAGTGGGTGAGCAAGATGGTAATGTAGATCCAGTTGAAGGTCTTGAAAGTGGTATTTTCTACAAAGACATTGTAAAGTTGGAGGAATTTAGAACAGAGTGGGCAGAAAAAATTTCTGTTGTTATATTGAGGGGATTCGATGCTGAATGTCGAGATTATGTGAAGAACAGAAGGCAGTGGCAGGAAAAGGGTGAGGACGGTTGGACAGTATCTAAGTATTTAGTTGGTGCTCTTGATTATTTGCAAGGTAAAGTATCGGTGGTAGAAGTAAATTTGAATGCAGTAGACTTTGTTGGGGTATGGAGAAGTTTGGCAGGTGGGATAGATCGATTGTTTTTCAATGGTATTCTAATGAGCAATGCAAGGTTTCATGATGGAGGAGTTGAGAGGTTTGGTAGGGATTTAGAGGTTTTATTTGGGGCATTTGGGGCTTGGTGTTTGAGACCCGAGGGTTTCTTCCCTAGAGTAAGTGAGGGCTTGAAGCTGTTGAAAATTGGAGAAGAGGAACTTCAAAATAGTTTGGCTGGAGAGACATGGATGAAGGAAAAAGGGATCAGACATTTGAGCGTGGCCGAGGCAGAGAAGATTGTGAAGAGTAGGGTATTTAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

796

Amino Acids

89.39

Weight (kDa)

5.14

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINT1_TIP1	PF04437	293 - 791	2.1e-36	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47700
fragaria_vesca	FvH4_5g15230 FvH4_5g15230 FvH4_5g15230
malus_domestica	MD06G1190600.v1.1 MD14G1197500.v1.1
prunus_persica	Prupe.5G189500_v2.0.a1
pyrus_communis	pycom06g16910 pycom14g16400
rosa_chinensis	RchiOBHm_Chr7g0180931
rosa_laevigata	RLG00000005224
rosa_multiflora	Rmu_co8437493.1_g000001 Rmu_sc0004056.1_g000008 Rmu_sc0028441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272410
rosa_rugosa	Rorug06G0437700 Rorug06G0437700
rosa_samantha	Rh7AG039100 Rh7BG038400 Rh7CG040100 Rh7DG038500
rosa_wichuraiana	Rw7G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2081
AasI	GACNNNNNNGTC	1 cut(s)	11
AatII	GACGTC	1 cut(s)	1731
Acc36I	ACCTGC	2 cut(s)	1421, 2081
AccI	GTMKAC	2 cut(s)	972, 2061
AccII	CGCG	2 cut(s)	222, 228
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	5 cut(s)	23, 141, 226, 228, 286
AclWI	GGATC	7 cut(s)	49, 159, 180, 193, 947, 1799, 2336
AcoI	YGGCCR	3 cut(s)	618, 677, 2346
AcsI	RAATTY	6 cut(s)	484, 953, 1586, 1862, 1887, 2047
AcuI	CTGAAG	4 cut(s)	510, 531, 1470, 1644
AcyI	GRCGYC	2 cut(s)	35, 1728
AfaI	GTAC	4 cut(s)	770, 866, 1052, 1162
AfiI	CCNNNNNNNGG	6 cut(s)	292, 571, 627, 675, 707, 1814
AflIII	ACRYGT	1 cut(s)	537
AgeI	ACCGGT	1 cut(s)	260
AjnI	CCWGG	5 cut(s)	102, 129, 633, 983, 1768
Alw21I	GWGCWC	2 cut(s)	129, 2008
Alw26I	GTCTC	8 cut(s)	24, 217, 269, 383, 747, 1239, 2212, 2300
AlwI	GGATC	7 cut(s)	49, 159, 180, 193, 947, 1799, 2336
Ama87I	CYCGRG	1 cut(s)	2222
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	5 cut(s)	132, 618, 629, 677, 2346
ApeKI	GCWGC	5 cut(s)	25, 288, 334, 795, 1685
ApoI	RAATTY	6 cut(s)	484, 953, 1586, 1862, 1887, 2047
AseI	ATTAAT	1 cut(s)	1680
AsiGI	ACCGGT	1 cut(s)	260
Asp700I	GAANNNNTTC	2 cut(s)	780, 1084
AspLEI	GCGC	2 cut(s)	224, 577
AspS9I	GGNCC	6 cut(s)	13, 40, 84, 133, 630, 1571
AsuC2I	CCSGG	1 cut(s)	1048
AsuHPI	GGTGA	6 cut(s)	385, 431, 892, 973, 1796, 1979
AsuII	TTCGAA	1 cut(s)	1698
AvaI	CYCGRG	1 cut(s)	2222
AvaII	GGWCC	4 cut(s)	13, 40, 84, 1571
BaeGI	GKGCMC	1 cut(s)	658
BalI	TGGCCA	2 cut(s)	620, 679
BamHI	GGATCC	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	129, 616
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	2 cut(s)	129, 2008
BbvI	GCAGC	5 cut(s)	12, 300, 321, 807, 1672
BccI	CCATC	6 cut(s)	290, 669, 1142, 1271, 1787, 2144
BciT130I	CCWGG	5 cut(s)	104, 131, 635, 985, 1770
BclI	TGATCA	2 cut(s)	595, 1659
BcnI	CCSGG	1 cut(s)	1048
BcoDI	GTCTC	8 cut(s)	24, 217, 269, 383, 747, 1239, 2212, 2300
BfaI	CTAG	5 cut(s)	197, 360, 1370, 1530, 2238
BfmI	CTRYAG	3 cut(s)	639, 793, 800
BfuAI	ACCTGC	2 cut(s)	1421, 2081
BisI	GCNGC	7 cut(s)	26, 142, 229, 289, 335, 796, 1686
BlsI	GCNGC	7 cut(s)	27, 143, 230, 290, 336, 797, 1687
BmcAI	AGTACT	1 cut(s)	770
Bme1390I	CCNGG	6 cut(s)	104, 131, 635, 985, 1048, 1770
Bme18I	GGWCC	4 cut(s)	13, 40, 84, 1571
BmeT110I	CYCGRG	1 cut(s)	2222
BmgT120I	GGNCC	6 cut(s)	13, 40, 84, 133, 630, 1571
BmiI	GGNNCC	5 cut(s)	108, 179, 187, 632, 1572
BmrFI	CCNGG	6 cut(s)	104, 131, 635, 985, 1048, 1770
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	6 cut(s)	421, 586, 923, 1481, 1642, 1906
BmuI	ACTGGG	1 cut(s)	130
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	3 cut(s)	113, 684, 2322
Bpu14I	TTCGAA	1 cut(s)	1698
BpuEI	CTTGAG	2 cut(s)	256, 857
BpuMI	CCSGG	1 cut(s)	1048
Bsa29I	ATCGAT	2 cut(s)	246, 2104
BsaBI	GATNNNNATC	2 cut(s)	93, 1495
BsaHI	GRCGYC	2 cut(s)	35, 1728
BsaI	GGTCTC	3 cut(s)	269, 747, 2212
BsaJI	CCNNGG	8 cut(s)	181, 226, 633, 670, 984, 1423, 2223, 2349
BsaWI	WCCGGW	2 cut(s)	81, 260
Bsc4I	CCNNNNNNNGG	6 cut(s)	292, 571, 627, 675, 707, 1814
Bse118I	RCCGGY	2 cut(s)	260, 337
Bse1I	ACTGG	7 cut(s)	16, 136, 348, 766, 1334, 1476, 1808
Bse3DI	GCAATG	3 cut(s)	1044, 1523, 2140
Bse8I	GATNNNNATC	2 cut(s)	93, 1495
BseAI	TCCGGA	1 cut(s)	81
BseBI	CCWGG	5 cut(s)	104, 131, 635, 985, 1770
BseCI	ATCGAT	2 cut(s)	246, 2104
BseDI	CCNNGG	8 cut(s)	181, 226, 633, 670, 984, 1423, 2223, 2349
BseGI	GGATG	6 cut(s)	301, 680, 914, 1012, 1153, 2319
BseJI	GATNNNNATC	2 cut(s)	93, 1495
BseLI	CCNNNNNNNGG	6 cut(s)	292, 571, 627, 675, 707, 1814
BseMI	GCAATG	3 cut(s)	1044, 1523, 2140
BseMII	CTCAG	3 cut(s)	112, 1178, 1570
BseNI	ACTGG	7 cut(s)	16, 136, 348, 766, 1334, 1476, 1808
BseRI	GAGGAG	4 cut(s)	107, 321, 344, 2169
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	5 cut(s)	12, 300, 321, 807, 1672
BseYI	CCCAGC	1 cut(s)	1565
Bsh1236I	CGCG	2 cut(s)	222, 228
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	5 cut(s)	134, 620, 631, 679, 2348
BshTI	ACCGGT	1 cut(s)	260
BshVI	ATCGAT	2 cut(s)	246, 2104
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	129, 2008
BsiHKCI	CYCGRG	1 cut(s)	2222
BsiSI	CCGG	5 cut(s)	32, 82, 261, 338, 1047
BslFI	GGGAC	1 cut(s)	1584
BslI	CCNNNNNNNGG	6 cut(s)	292, 571, 627, 675, 707, 1814
BsmAI	GTCTC	8 cut(s)	24, 217, 269, 383, 747, 1239, 2212, 2300
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	1584
BsmI	GAATGC	2 cut(s)	469, 2059
BsnI	GGCC	5 cut(s)	134, 620, 631, 679, 2348
Bso31I	GGTCTC	3 cut(s)	269, 747, 2212
BsoBI	CYCGRG	1 cut(s)	2222
Bsp119I	TTCGAA	1 cut(s)	1698
Bsp1286I	GDGCHC	4 cut(s)	129, 616, 658, 2008
Bsp13I	TCCGGA	1 cut(s)	81
BspACI	CCGC	5 cut(s)	23, 141, 226, 228, 286
BspANI	GGCC	5 cut(s)	134, 620, 631, 679, 2348
BspCNI	CTCAG	3 cut(s)	111, 1177, 1569
BspDI	ATCGAT	2 cut(s)	246, 2104
BspEI	TCCGGA	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	222, 228
BspHI	TCATGA	1 cut(s)	2146
BspLI	GGNNCC	5 cut(s)	108, 179, 187, 632, 1572
BspMAI	CTGCAG	1 cut(s)	797
BspMI	ACCTGC	2 cut(s)	1421, 2081
BspPI	GGATC	7 cut(s)	49, 159, 180, 193, 947, 1799, 2336
BspQI	GCTCTTC	1 cut(s)	882
BspT104I	TTCGAA	1 cut(s)	1698
BspTNI	GGTCTC	3 cut(s)	269, 747, 2212
BsrDI	GCAATG	3 cut(s)	1044, 1523, 2140
BsrFI	RCCGGY	2 cut(s)	260, 337
BsrI	ACTGG	7 cut(s)	16, 136, 348, 766, 1334, 1476, 1808
BssAI	RCCGGY	2 cut(s)	260, 337
BssECI	CCNNGG	8 cut(s)	181, 226, 633, 670, 984, 1423, 2223, 2349
BssNI	GRCGYC	2 cut(s)	35, 1728
BssT1I	CCWWGG	2 cut(s)	670, 1423
Bst2UI	CCWGG	5 cut(s)	104, 131, 635, 985, 1770
Bst4CI	ACNGT	5 cut(s)	773, 1055, 1414, 1976, 1984
Bst6I	CTCTTC	3 cut(s)	882, 2271, 2363
BstACI	GRCGYC	2 cut(s)	35, 1728
BstBI	TTCGAA	1 cut(s)	1698
BstC8I	GCNNGC	3 cut(s)	226, 339, 1690
BstDEI	CTNAG	5 cut(s)	98, 626, 1164, 1556, 1989
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	6 cut(s)	301, 680, 914, 1012, 1153, 2319
BstFNI	CGCG	2 cut(s)	222, 228
BstHHI	GCGC	2 cut(s)	224, 577
BstMAI	GTCTC	8 cut(s)	24, 217, 269, 383, 747, 1239, 2212, 2300
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	5 cut(s)	228, 237, 288, 392, 2204
BstNI	CCWGG	5 cut(s)	104, 131, 635, 985, 1770
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	6 cut(s)	102, 129, 633, 983, 1046, 1768
BstSFI	CTRYAG	3 cut(s)	639, 793, 800
BstSLI	GKGCMC	1 cut(s)	658
BstUI	CGCG	2 cut(s)	222, 228
BstV1I	GCAGC	5 cut(s)	12, 300, 321, 807, 1672
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	185, 1804
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstYI	RGATCY	2 cut(s)	185, 1804
Bsu15I	ATCGAT	2 cut(s)	246, 2104
BsuRI	GGCC	5 cut(s)	134, 620, 631, 679, 2348
BsuTUI	ATCGAT	2 cut(s)	246, 2104
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	1 cut(s)	1410
BtsCI	GGATG	6 cut(s)	301, 680, 914, 1012, 1153, 2319
BtsI	GCAGTG	1 cut(s)	1958
BtsIMutI	CAGTG	6 cut(s)	143, 341, 1419, 1483, 1785, 1958
BveI	ACCTGC	2 cut(s)	1421, 2081
Cac8I	GCNNGC	3 cut(s)	226, 339, 1690
CciI	TCATGA	1 cut(s)	2146
CfoI	GCGC	2 cut(s)	224, 577
Cfr10I	RCCGGY	2 cut(s)	260, 337
Cfr13I	GGNCC	6 cut(s)	13, 40, 84, 133, 630, 1571
Cfr42I	CCGCGG	1 cut(s)	229
ClaI	ATCGAT	2 cut(s)	246, 2104
CpoI	CGGWCCG	1 cut(s)	84
CseI	GACGC	3 cut(s)	24, 568, 1454
Csp6I	GTAC	4 cut(s)	769, 865, 1051, 1161
CspAI	ACCGGT	1 cut(s)	260
CspI	CGGWCCG	1 cut(s)	84
CviAII	CATG	5 cut(s)	448, 462, 538, 2147, 2310
CviQI	GTAC	4 cut(s)	769, 865, 1051, 1161
DdeI	CTNAG	5 cut(s)	98, 626, 1164, 1556, 1989
DraI	TTTAAA	1 cut(s)	2383
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
EaeI	YGGCCR	3 cut(s)	618, 677, 2346
Eam1104I	CTCTTC	3 cut(s)	882, 2271, 2363
EarI	CTCTTC	3 cut(s)	882, 2271, 2363
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	670, 1423
Eco24I	GRGCYC	2 cut(s)	129, 616
Eco31I	GGTCTC	3 cut(s)	269, 747, 2212
Eco32I	GATATC	1 cut(s)	1212
Eco47I	GGWCC	4 cut(s)	13, 40, 84, 1571
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	4 cut(s)	510, 531, 1470, 1644
Eco88I	CYCGRG	1 cut(s)	2222
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	630, 1571
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	5 cut(s)	102, 129, 633, 983, 1768
EcoRV	GATATC	1 cut(s)	1212
EcoT14I	CCWWGG	2 cut(s)	670, 1423
EcoT38I	GRGCYC	2 cut(s)	129, 616
ErhI	CCWWGG	2 cut(s)	670, 1423
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	5 cut(s)	451, 465, 541, 2150, 2313
FalI	AAGNNNNNCTT	6 cut(s)	458, 490, 741, 773, 2268, 2300
FaqI	GGGAC	1 cut(s)	1584
FatI	CATG	5 cut(s)	447, 461, 537, 2146, 2309
FauI	CCCGC	2 cut(s)	233, 293
FauNDI	CATATG	1 cut(s)	382
FbaI	TGATCA	2 cut(s)	595, 1659
FblI	GTMKAC	2 cut(s)	972, 2061
Fnu4HI	GCNGC	7 cut(s)	26, 142, 229, 289, 335, 796, 1686
FokI	GGATG	6 cut(s)	308, 687, 901, 1019, 1160, 2326
FriOI	GRGCYC	2 cut(s)	129, 616
Fsp4HI	GCNGC	7 cut(s)	26, 142, 229, 289, 335, 796, 1686
FspBI	CTAG	5 cut(s)	197, 360, 1370, 1530, 2238
GlaI	GCGC	2 cut(s)	223, 576
GluI	GCNGC	7 cut(s)	26, 142, 229, 289, 335, 796, 1686
GsaI	CCCAGC	1 cut(s)	1569
GsuI	CTGGAG	3 cut(s)	113, 684, 2322
HaeIII	GGCC	5 cut(s)	134, 620, 631, 679, 2348
HapII	CCGG	5 cut(s)	32, 82, 261, 338, 1047
HgaI	GACGC	3 cut(s)	24, 568, 1454
HhaI	GCGC	2 cut(s)	224, 577
Hin1I	GRCGYC	2 cut(s)	35, 1728
Hin1II	CATG	5 cut(s)	451, 465, 541, 2150, 2313
Hin6I	GCGC	2 cut(s)	222, 575
HinP1I	GCGC	2 cut(s)	222, 575
HincII	GTYRAC	3 cut(s)	543, 997, 1044
HindII	GTYRAC	3 cut(s)	543, 997, 1044
HindIII	AAGCTT	1 cut(s)	401
HpaI	GTTAAC	2 cut(s)	543, 1044
HpaII	CCGG	5 cut(s)	32, 82, 261, 338, 1047
HphI	GGTGA	6 cut(s)	385, 431, 892, 973, 1796, 1979
Hpy166II	GTNNAC	6 cut(s)	543, 973, 997, 1044, 1201, 2062
Hpy8I	GTNNAC	6 cut(s)	543, 973, 997, 1044, 1201, 2062
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	8 cut(s)	73, 296, 343, 1619, 1705, 1808, 1941, 2311
HpyCH4III	ACNGT	5 cut(s)	773, 1055, 1414, 1976, 1984
HpyCH4IV	ACGT	1 cut(s)	1728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	228, 237, 288, 392, 2204
HpyF3I	CTNAG	5 cut(s)	98, 626, 1164, 1556, 1989
HpySE526I	ACGT	1 cut(s)	1728
Hsp92I	GRCGYC	2 cut(s)	35, 1728
Hsp92II	CATG	5 cut(s)	451, 465, 541, 2150, 2313
HspAI	GCGC	2 cut(s)	222, 575
Kpn2I	TCCGGA	1 cut(s)	81
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Ksp22I	TGATCA	2 cut(s)	595, 1659
KspAI	GTTAAC	2 cut(s)	543, 1044
KspI	CCGCGG	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	882
Lsp1109I	GCAGC	5 cut(s)	12, 300, 321, 807, 1672
LweI	GCATC	6 cut(s)	421, 586, 923, 1481, 1642, 1906
MaeI	CTAG	5 cut(s)	197, 360, 1370, 1530, 2238
MaeII	ACGT	1 cut(s)	1728
MaeIII	GTNAC	2 cut(s)	550, 1280
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	2 cut(s)	185, 1804
MhlI	GDGCHC	4 cut(s)	129, 616, 658, 2008
MlsI	TGGCCA	2 cut(s)	620, 679
MluNI	TGGCCA	2 cut(s)	620, 679
MlyI	GAGTC	3 cut(s)	106, 377, 992
MmeI	TCCRAC	3 cut(s)	134, 1836, 1958
Mox20I	TGGCCA	2 cut(s)	620, 679
MroI	TCCGGA	1 cut(s)	81
MroNI	GCCGGC	1 cut(s)	337
MroXI	GAANNNNTTC	2 cut(s)	780, 1084
MscI	TGGCCA	2 cut(s)	620, 679
MseI	TTAA	9 cut(s)	513, 522, 542, 759, 1043, 1305, 1358, 1680, 2382
Msp20I	TGGCCA	2 cut(s)	620, 679
MspA1I	CMGCKG	2 cut(s)	25, 228
MspI	CCGG	5 cut(s)	32, 82, 261, 338, 1047
MspR9I	CCNGG	6 cut(s)	104, 131, 635, 985, 1048, 1770
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	2 cut(s)	469, 2059
MvaI	CCWGG	5 cut(s)	104, 131, 635, 985, 1770
MvnI	CGCG	2 cut(s)	222, 228
MwoI	GCNNNNNNNGC	5 cut(s)	228, 237, 288, 392, 2204
NaeI	GCCGGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	1048
NdeI	CATATG	1 cut(s)	382
NgoMIV	GCCGGC	1 cut(s)	337
NlaIII	CATG	5 cut(s)	451, 465, 541, 2150, 2313
NlaIV	GGNNCC	5 cut(s)	108, 179, 187, 632, 1572
NmeAIII	GCCGAG	1 cut(s)	2374
NspI	RCATGY	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	1698
PagI	TCATGA	1 cut(s)	2146
PaqCI	CACCTGC	1 cut(s)	2081
PciI	ACATGT	1 cut(s)	537
PciSI	GCTCTTC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	1 cut(s)	1137
PctI	GAATGC	2 cut(s)	469, 2059
PdiI	GCCGGC	1 cut(s)	339
PdmI	GAANNNNTTC	2 cut(s)	780, 1084
PfeI	GAWTC	7 cut(s)	248, 269, 704, 1254, 1533, 1700, 1911
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	7 cut(s)	27, 143, 230, 290, 336, 797, 1687
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	3 cut(s)	106, 376, 992
PpsI	GAGTC	3 cut(s)	106, 376, 992
PpuMI	RGGWCCY	1 cut(s)	1571
PscI	ACATGT	1 cut(s)	537
PshBI	ATTAAT	1 cut(s)	1680
Psp124BI	GAGCTC	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	1571
Psp6I	CCWGG	5 cut(s)	102, 129, 633, 983, 1768
PspFI	CCCAGC	1 cut(s)	1565
PspGI	CCWGG	5 cut(s)	102, 129, 633, 983, 1768
PspN4I	GGNNCC	5 cut(s)	108, 179, 187, 632, 1572
PspPI	GGNCC	6 cut(s)	13, 40, 84, 133, 630, 1571
PspPPI	RGGWCCY	1 cut(s)	1571
PstI	CTGCAG	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	185, 1804
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	4 cut(s)	770, 866, 1052, 1162
RsaNI	GTAC	4 cut(s)	769, 865, 1051, 1161
Rsr2I	CGGWCCG	1 cut(s)	84
RsrII	CGGWCCG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	129
SacII	CCGCGG	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	9 cut(s)	513, 522, 542, 759, 1043, 1305, 1358, 1680, 2382
SatI	GCNGC	7 cut(s)	26, 142, 229, 289, 335, 796, 1686
Sau96I	GGNCC	6 cut(s)	13, 40, 84, 133, 630, 1571
ScaI	AGTACT	1 cut(s)	770
SchI	GAGTC	3 cut(s)	106, 377, 992
ScrFI	CCNGG	6 cut(s)	104, 131, 635, 985, 1048, 1770
SduI	GDGCHC	4 cut(s)	129, 616, 658, 2008
SfaNI	GCATC	6 cut(s)	421, 586, 923, 1481, 1642, 1906
SfcI	CTRYAG	3 cut(s)	639, 793, 800
Sfr303I	CCGCGG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	1698
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	4 cut(s)	13, 40, 84, 1571
SmlI	CTYRAG	2 cut(s)	235, 836
SmoI	CTYRAG	2 cut(s)	235, 836
SsiI	CCGC	5 cut(s)	23, 141, 226, 228, 286
SspMI	CTAG	5 cut(s)	197, 360, 1370, 1530, 2238
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	6 cut(s)	102, 129, 633, 983, 1046, 1768
StyI	CCWWGG	2 cut(s)	670, 1423
TaaI	ACNGT	5 cut(s)	773, 1055, 1414, 1976, 1984
TaiI	ACGT	1 cut(s)	1731
TaqII	GACCGA	2 cut(s)	28, 101
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	2 cut(s)	144, 231
TfiI	GAWTC	7 cut(s)	248, 269, 704, 1254, 1533, 1700, 1911
Tru1I	TTAA	9 cut(s)	513, 522, 542, 759, 1043, 1305, 1358, 1680, 2382
Tru9I	TTAA	9 cut(s)	513, 522, 542, 759, 1043, 1305, 1358, 1680, 2382
TscAI	CASTG	6 cut(s)	143, 348, 1419, 1483, 1785, 1958
TseI	GCWGC	5 cut(s)	25, 288, 334, 795, 1685
TspDTI	ATGAA	6 cut(s)	464, 1047, 1181, 1254, 2135, 2330
TspGWI	ACGGA	2 cut(s)	199, 1658
TspRI	CASTG	6 cut(s)	143, 348, 1419, 1483, 1785, 1958
VpaK11BI	GGWCC	4 cut(s)	13, 40, 84, 1571
VspI	ATTAAT	1 cut(s)	1680
XapI	RAATTY	6 cut(s)	484, 953, 1586, 1862, 1887, 2047
XceI	RCATGY	1 cut(s)	541
XmiI	GTMKAC	2 cut(s)	972, 2061
XmnI	GAANNNNTTC	2 cut(s)	780, 1084
XspI	CTAG	5 cut(s)	197, 360, 1370, 1530, 2238
ZraI	GACGTC	1 cut(s)	1729
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.