Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437493.1

Orthogroup ID

OG0009457

Physical Location & Seq

Genomic Coordinates Forward (+)

56 .. 1291

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437493.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atgggtactcaggaacaggctaaaatatcttggcttcatcttgtggacttgatgatatcttttgataaacaaatcaagtctctgatagaacattctggaatcttactttcatttgaggacgacggtaacttcgtaaaggcttcttctcttaatgttttctgtgatcgaccagactggcttgatttatgggcagagatagaattaagtgatatactagataagttgaaacttgaaactggcgatgagagaaattggacagtgaaagtccaaggagcaggtcttttgtctgacgctgaagatcacaaagctcctgcaatttccagtgcttatcttcgatgcctatcatctgtggttgatcgttgccgatcattgcctagaatctctatgaggtcaaggtttctcagattagctgggggacctgttatacacaaatttttagactgcttactctttaggtgtcaagaagctgaaggtctgactgccttgacagacaatgatgctttgatcaaagttgccaactccattaatgctgctcgctacttcgaatctgttttgaaggaatggtgtgaggacgtctttttccttgaaattgggtcaaatcaatacgaccaaccaggaatgtcaatgggtgagcaagatggtaatgtagatccagttgaaggtcttgaaagtggtattttctacaaagacattgtaaagttggaggagtttagaacagagtgggcagaaaaaatttctgttgttatattgaggggattcgatgctgaatgtcgagattatgtgaagaacagaaggcagtggcaggaaaagggtgaggacggttggacagtatctaagtatttagttggtgctcttgattatttgcaaggtaaagtattggtggtagaagtaaatttgaatgcagtagactttgttggggtatggagaagtttggcagctgggatagatcgattgtttttcaatggtattctaatgagcaatgcaaggtttcacgatggaggagttgagaggtttggtagggatttagaggttttatttggggcatttggggcttggtgtttgagacccgagggtttcttccctagagtaagtgagggcttgaagctgttgaaaattggagaagaggaacttcaaaatagtttggctggagagacatggatgaaggaaagagggatcagacatttgagcgtggccgaggcagagaagattgtgaagagtagggtatttacaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

411

Amino Acids

46.48

Weight (kDa)

5.01

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47700
fragaria_vesca	FvH4_5g15230 FvH4_5g15230 FvH4_5g15230
malus_domestica	MD06G1190600.v1.1 MD14G1197500.v1.1
prunus_persica	Prupe.5G189500_v2.0.a1
pyrus_communis	pycom06g16910 pycom14g16400
rosa_chinensis	RchiOBHm_Chr7g0180931
rosa_laevigata	RLG00000005224
rosa_multiflora	Rmu_co8437493.1_g000001 Rmu_sc0004056.1_g000008 Rmu_sc0028441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272410
rosa_rugosa	Rorug06G0437700 Rorug06G0437700
rosa_samantha	Rh7AG039100 Rh7BG038400 Rh7CG040100 Rh7DG038500
rosa_wichuraiana	Rw7G003200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	576
Acc36I	ACCTGC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	906
AclWI	GGATC	2 cut(s)	644, 1181
AcoI	YGGCCR	1 cut(s)	1191
AcsI	RAATTY	3 cut(s)	431, 732, 892
AcuI	CTGAAG	2 cut(s)	315, 489
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	5 cut(s)	308, 410, 467, 938, 1105
AluI	AGCT	5 cut(s)	308, 410, 467, 938, 1105
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	3 cut(s)	84, 1057, 1145
AlwI	GGATC	2 cut(s)	644, 1181
Ama87I	CYCGRG	1 cut(s)	1067
AoxI	GGCC	1 cut(s)	1191
ApeKI	GCWGC	2 cut(s)	530, 935
ApoI	RAATTY	3 cut(s)	431, 732, 892
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AseI	ATTAAT	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	641, 824
AsuII	TTCGAA	1 cut(s)	543
AvaI	CYCGRG	1 cut(s)	1067
AvaII	GGWCC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	853
BbvI	GCAGC	2 cut(s)	517, 947
BccI	CCATC	2 cut(s)	632, 989
BciT130I	CCWGG	1 cut(s)	615
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	84, 1057, 1145
BfaI	CTAG	3 cut(s)	215, 375, 1083
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	2 cut(s)	531, 936
BlsI	GCNGC	2 cut(s)	532, 937
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	1067
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	3 cut(s)	326, 487, 751
BpmI	CTGGAG	1 cut(s)	1167
Bpu14I	TTCGAA	1 cut(s)	543
Bsa29I	ATCGAT	1 cut(s)	949
BsaBI	GATNNNNATC	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	1057
BsaJI	CCNNGG	3 cut(s)	268, 1068, 1194
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	4 cut(s)	179, 241, 321, 653
Bse3DI	GCAATG	2 cut(s)	368, 985
Bse8I	GATNNNNATC	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	949
BseDI	CCNNGG	3 cut(s)	268, 1068, 1194
BseGI	GGATG	1 cut(s)	1164
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMI	GCAATG	2 cut(s)	368, 985
BseMII	CTCAG	2 cut(s)	23, 415
BseNI	ACTGG	4 cut(s)	179, 241, 321, 653
BseRI	GAGGAG	2 cut(s)	719, 1014
BseXI	GCAGC	2 cut(s)	517, 947
BseYI	CCCAGC	2 cut(s)	410, 938
BshFI	GGCC	1 cut(s)	1193
BshVI	ATCGAT	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	1067
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	3 cut(s)	84, 1057, 1145
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	1 cut(s)	1193
Bso31I	GGTCTC	1 cut(s)	1057
BsoBI	CYCGRG	1 cut(s)	1067
Bsp119I	TTCGAA	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp143I	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
BspANI	GGCC	1 cut(s)	1193
BspCNI	CTCAG	2 cut(s)	22, 414
BspDI	ATCGAT	1 cut(s)	949
BspLI	GGNNCC	1 cut(s)	417
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	644, 1181
BspT104I	TTCGAA	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	1057
BsrDI	GCAATG	2 cut(s)	368, 985
BsrI	ACTGG	4 cut(s)	179, 241, 321, 653
BssECI	CCNNGG	3 cut(s)	268, 1068, 1194
BssMI	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	4 cut(s)	125, 259, 821, 829
Bst6I	CTCTTC	2 cut(s)	1116, 1208
BstACI	GRCGYC	1 cut(s)	573
BstBI	TTCGAA	1 cut(s)	543
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	3 cut(s)	9, 401, 834
BstF5I	GGATG	1 cut(s)	1164
BstKTI	GATC	8 cut(s)	166, 301, 358, 368, 507, 652, 949, 1176
BstMAI	GTCTC	3 cut(s)	84, 1057, 1145
BstMBI	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
BstMWI	GCNNNNNNNGC	1 cut(s)	1049
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	613
BstV1I	GCAGC	2 cut(s)	517, 947
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
Bsu15I	ATCGAT	1 cut(s)	949
BsuRI	GGCC	1 cut(s)	1193
BsuTUI	ATCGAT	1 cut(s)	949
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	1164
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	3 cut(s)	264, 328, 803
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	416
ClaI	ATCGAT	1 cut(s)	949
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	1 cut(s)	1155
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	9, 401, 834
DpnI	GATC	8 cut(s)	165, 300, 357, 367, 506, 651, 948, 1175
DpnII	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
EaeI	YGGCCR	1 cut(s)	1191
Eam1104I	CTCTTC	2 cut(s)	1116, 1208
EarI	CTCTTC	2 cut(s)	1116, 1208
Eco130I	CCWWGG	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	1057
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	2 cut(s)	315, 489
Eco88I	CYCGRG	1 cut(s)	1067
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	1158
FaiI	YATR	8 cut(s)	187, 212, 386, 425, 746, 780, 922, 1156
FalI	AAGNNNNNCTT	2 cut(s)	1113, 1145
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	1 cut(s)	1154
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	906
Fnu4HI	GCNGC	2 cut(s)	531, 936
FokI	GGATG	1 cut(s)	1171
Fsp4HI	GCNGC	2 cut(s)	531, 936
FspBI	CTAG	3 cut(s)	215, 375, 1083
GluI	GCNGC	2 cut(s)	531, 936
GsaI	CCCAGC	2 cut(s)	414, 942
GsuI	CTGGAG	1 cut(s)	1167
HaeIII	GGCC	1 cut(s)	1193
HgaI	GACGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	1 cut(s)	1158
HinfI	GANTC	4 cut(s)	99, 378, 545, 756
HphI	GGTGA	2 cut(s)	641, 824
Hpy166II	GTNNAC	2 cut(s)	46, 907
Hpy188I	TCNGA	5 cut(s)	84, 289, 404, 477, 1178
Hpy188III	TCNNGA	7 cut(s)	11, 96, 461, 665, 773, 854, 992
Hpy8I	GTNNAC	2 cut(s)	46, 907
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	5 cut(s)	464, 550, 653, 786, 1156
HpyCH4III	ACNGT	4 cut(s)	125, 259, 821, 829
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	4 cut(s)	314, 865, 902, 983
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1049
HpyF3I	CTNAG	3 cut(s)	9, 401, 834
HpySE526I	ACGT	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	1158
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
LmnI	GCTCC	2 cut(s)	272, 313
Lsp1109I	GCAGC	2 cut(s)	517, 947
LweI	GCATC	3 cut(s)	326, 487, 751
MaeI	CTAG	3 cut(s)	215, 375, 1083
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	8 cut(s)	165, 300, 357, 367, 506, 651, 948, 1175
MboI	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
MboII	GAAGA	8 cut(s)	135, 308, 323, 796, 1069, 1133, 1216, 1225
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	853
MluCI	AATT	8 cut(s)	200, 250, 315, 431, 588, 732, 892, 1113
MmeI	TCCRAC	2 cut(s)	681, 803
MseI	TTAA	3 cut(s)	150, 203, 525
MspA1I	CMGCKG	1 cut(s)	938
MspR9I	CCNGG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	1049
NdeII	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
NlaIII	CATG	1 cut(s)	1158
NlaIV	GGNNCC	1 cut(s)	417
NmeAIII	GCCGAG	1 cut(s)	1219
NspV	TTCGAA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	4 cut(s)	99, 378, 545, 756
PkrI	GCNGC	2 cut(s)	532, 937
PpuMI	RGGWCCY	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	613
PspFI	CCCAGC	2 cut(s)	410, 938
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	416
PspPPI	RGGWCCY	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	3 cut(s)	150, 203, 525
SatI	GCNGC	2 cut(s)	531, 936
Sau3AI	GATC	8 cut(s)	163, 298, 355, 365, 504, 649, 946, 1173
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	853
SfaNI	GCATC	3 cut(s)	326, 487, 751
SfuI	TTCGAA	1 cut(s)	543
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	8 cut(s)	200, 250, 315, 431, 588, 732, 892, 1113
SspMI	CTAG	3 cut(s)	215, 375, 1083
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	4 cut(s)	125, 259, 821, 829
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	6 cut(s)	166, 334, 543, 759, 772, 949
TasI	AATT	8 cut(s)	200, 250, 315, 431, 588, 732, 892, 1113
TfiI	GAWTC	4 cut(s)	99, 378, 545, 756
Tru1I	TTAA	3 cut(s)	150, 203, 525
Tru9I	TTAA	3 cut(s)	150, 203, 525
TscAI	CASTG	3 cut(s)	264, 328, 803
TseI	GCWGC	2 cut(s)	530, 935
TspDTI	ATGAA	3 cut(s)	26, 99, 1175
TspRI	CASTG	3 cut(s)	264, 328, 803
VpaK11BI	GGWCC	1 cut(s)	416
VspI	ATTAAT	1 cut(s)	525
XapI	RAATTY	3 cut(s)	431, 732, 892
XmiI	GTMKAC	1 cut(s)	906
XspI	CTAG	3 cut(s)	215, 375, 1083
ZraI	GACGTC	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.