Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003308

Physical Location & Seq

Genomic Coordinates Forward (+)

34199904 .. 34203094

Gene Structure 3191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1207600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCCCAAGATACAAGTTCTGGCGCTAAATCACGGCGGCCACGTTCTGGTATGTTGCGGGATAAGGTTCAGCTTGTGAAAAGAAAGGACTGTGATCGATACGAGATTGTCCAAATTCCAGATCTGTTGGCTCAAAAGAATGCGGGGATAATACTAGTTGGAGTGGCAGGCCCCTCTGGGGCTGGTAAAACTATTTTCACTGATAAAGTGCTCAGCTTCATGCCCAACATTGCTGTTATTACAATGGACAACTACAATGACGCTAGTCGAATCATCGATGGAAACTTTGATGGTAAGAATCTCATTTTTGAGTCCATCAAACATCTGTTTGATTTGATTGTTATAAACTTTCAACTCCATTTTGTAGAGATTTCTGCTGATATGTGCTTGGTGGAGTGGGTTACAGATAGTGCCTTCATAATATCGCCCAGAATAACTTTTGAAGTTAGCGTACGCTTACTTGGAGGTCTCATGGCCTTGGGGTATACAATTGCATCCATCTTGAAACGAAGCAGCCATATCTTCTGTGATGAGAAGGTTTTCGTGAAAAGTGATTGGTTGGAGCAACTTAATCGTCAATATGTTCAGCTCGGCCTGGATGGTTCATATGTTCCTCGTACTTACATCGAACAAATTCAGCTAGAGAAACTTGTAAATGATGTTATGACCTTGCCAGATGATTTGAAGTCACAGCTCAGCATAGATGATGATTTCGTTTTGAGCCCTAAGGAAGCACTTTCCCGAGTTTCTGCAGATAGGAGAAACAAGTATCTCAACCGTAGAAGGTTTGATGGAAGAAACCCGGAATCACCTGCAGCAATTTCGAACCAGGGAGTTATTACTCAACTTTCAGAACAAGTTTCTACGCTGAATGAGAGGATGGATGAGTTTACATTCTGTGTGGAAGAGGTGAACTCCAAGATCATGCACCAAATAGACAATTTGAGCAATCTTGTGCGGGAGTATACGGCAGAGAGGTTTCGCAAAGGAAGAACAGATGCTACTGGAAGAATGCCTGATATCGAATCAGTTGTACTTGTTCTTGCTTTGGCAATTGGCGGTTTAGGCGTCTTCTTACTCAGGAGTCTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

365

Amino Acids

40.97

Weight (kDa)

5.93

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73980 AT1G73980 AT1G73980
fragaria_vesca	FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040
malus_domestica	MD06G1207600.v1.1 MD06G1207800.v1.1 MD14G1218200.v1.1
prunus_persica	Prupe.5G212000_v2.0.a1 Prupe.5G212000_v2.0.a1
pyrus_communis	pycom06g18560 pycom06g18570 pycom14g18090
rosa_chinensis	RchiOBHm_Chr7g0184091
rosa_laevigata	RLG00000005001
rosa_multiflora	Rmu_sc0004712.1_g000008 Rmu_sc0025350.1_g000011
rosa_roxburghii	Rroxscaffold_3G00269890
rosa_rugosa	Rorug06G0462800 Rorug06G0462900
rosa_samantha	Rh7AG082900 Rh7BG064100 Rh7CG064800 Rh7DG064300
rosa_wichuraiana	Rw7G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AarI	CACCTGC	1 cut(s)	820
Acc36I	ACCTGC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccI	GTMKAC	2 cut(s)	485, 965
AciI	CCGC	5 cut(s)	37, 58, 143, 958, 1059
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	114, 633
AcyI	GRCGYC	1 cut(s)	1068
AfaI	GTAC	3 cut(s)	453, 619, 1035
AfiI	CCNNNNNNNGG	2 cut(s)	47, 178
AgsI	TTSAA	4 cut(s)	353, 443, 505, 685
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	594, 828
AluBI	AGCT	5 cut(s)	73, 216, 589, 640, 694
AluI	AGCT	5 cut(s)	73, 216, 589, 640, 694
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	5 cut(s)	3, 38, 169, 474, 592
ApeKI	GCWGC	2 cut(s)	513, 815
ApoI	RAATTY	2 cut(s)	114, 633
Asp700I	GAANNNNTTC	2 cut(s)	539, 633
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	4, 170
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	2 cut(s)	801, 922
AsuII	TTCGAA	1 cut(s)	824
AvaI	CYCGRG	1 cut(s)	741
AxyI	CCTNAGG	1 cut(s)	726
BanII	GRGCYC	1 cut(s)	725
BarI	GAAGNNNNNNTAC	2 cut(s)	435, 467
BbsI	GAAGAC	1 cut(s)	1063
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	525, 827
BccI	CCATC	7 cut(s)	272, 284, 323, 506, 593, 785, 874
BceAI	ACGGC	2 cut(s)	50, 984
BcgI	CGANNNNNNTGC	4 cut(s)	554, 588, 804, 838
BciT130I	CCWGG	2 cut(s)	596, 830
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	1 cut(s)	473
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	3 cut(s)	155, 264, 641
BfmI	CTRYAG	2 cut(s)	750, 813
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	820
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	3 cut(s)	38, 514, 816
BlpI	GCTNAGC	2 cut(s)	212, 695
BlsI	GCNGC	3 cut(s)	39, 515, 817
Bme1390I	CCNGG	3 cut(s)	596, 803, 830
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	4, 170
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	3 cut(s)	596, 803, 830
BmsI	GCATC	2 cut(s)	503, 988
BoxI	GACNNNNGTC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	1063
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
Bpu1102I	GCTNAGC	2 cut(s)	212, 695
Bpu14I	TTCGAA	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	803
Bsa29I	ATCGAT	2 cut(s)	97, 276
BsaHI	GRCGYC	1 cut(s)	1068
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	477, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 178
Bse1I	ACTGG	1 cut(s)	1009
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	596, 830
BseCI	ATCGAT	2 cut(s)	97, 276
BseDI	CCNNGG	2 cut(s)	477, 829
BseGI	GGATG	4 cut(s)	494, 604, 885, 889
BseLI	CCNNNNNNNGG	2 cut(s)	47, 178
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	3 cut(s)	226, 709, 1093
BseNI	ACTGG	1 cut(s)	1009
BseXI	GCAGC	2 cut(s)	525, 827
BshFI	GGCC	5 cut(s)	5, 40, 171, 476, 594
BshVI	ATCGAT	2 cut(s)	97, 276
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	1 cut(s)	803
BsiWI	CGTACG	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	47, 178
BsmAI	GTCTC	1 cut(s)	473
BsmI	GAATGC	2 cut(s)	145, 1017
BsnI	GGCC	5 cut(s)	5, 40, 171, 476, 594
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	824
Bsp1286I	GDGCHC	2 cut(s)	213, 725
Bsp143I	GATC	3 cut(s)	94, 121, 921
Bsp1720I	GCTNAGC	2 cut(s)	212, 695
BspACI	CCGC	5 cut(s)	37, 58, 143, 958, 1059
BspANI	GGCC	5 cut(s)	5, 40, 171, 476, 594
BspCNI	CTCAG	3 cut(s)	225, 708, 1092
BspDI	ATCGAT	2 cut(s)	97, 276
BspLI	GGNNCC	1 cut(s)	172
BspMAI	CTGCAG	2 cut(s)	754, 817
BspMI	ACCTGC	1 cut(s)	820
BspT104I	TTCGAA	1 cut(s)	824
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	1009
BssECI	CCNNGG	2 cut(s)	477, 829
BssMI	GATC	3 cut(s)	94, 121, 921
BssNAI	GTATAC	2 cut(s)	486, 966
BssNI	GRCGYC	1 cut(s)	1068
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	2 cut(s)	486, 966
Bst2UI	CCWGG	2 cut(s)	596, 830
Bst4CI	ACNGT	2 cut(s)	92, 779
Bst6I	CTCTTC	1 cut(s)	900
BstACI	GRCGYC	1 cut(s)	1068
BstBI	TTCGAA	1 cut(s)	824
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	4 cut(s)	212, 695, 726, 1079
BstF5I	GGATG	4 cut(s)	494, 604, 885, 889
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	3 cut(s)	97, 124, 924
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	3 cut(s)	94, 121, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	1065
BstNI	CCWGG	2 cut(s)	596, 830
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	594, 801, 828
BstSFI	CTRYAG	2 cut(s)	750, 813
BstV1I	GCAGC	2 cut(s)	525, 827
BstV2I	GAAGAC	1 cut(s)	1063
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BstZ17I	GTATAC	2 cut(s)	486, 966
Bsu15I	ATCGAT	2 cut(s)	97, 276
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	5 cut(s)	5, 40, 171, 476, 594
BsuTUI	ATCGAT	2 cut(s)	97, 276
BtsCI	GGATG	4 cut(s)	494, 604, 885, 889
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	820
Cac8I	GCNNGC	1 cut(s)	169
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	4, 170
ClaI	ATCGAT	2 cut(s)	97, 276
CseI	GACGC	2 cut(s)	269, 1057
Csp6I	GTAC	3 cut(s)	452, 618, 1034
CviAII	CATG	3 cut(s)	220, 472, 925
CviQI	GTAC	3 cut(s)	452, 618, 1034
DdeI	CTNAG	4 cut(s)	212, 695, 726, 1079
DpnI	GATC	3 cut(s)	96, 123, 923
DpnII	GATC	3 cut(s)	94, 121, 921
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
Eco130I	CCWWGG	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	1021
Eco81I	CCTNAGG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	741
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	594, 828
EcoRV	GATATC	1 cut(s)	1021
EcoT14I	CCWWGG	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	223, 475, 928
FatI	CATG	3 cut(s)	219, 471, 924
FauI	CCCGC	3 cut(s)	51, 136, 951
FauNDI	CATATG	1 cut(s)	607
FblI	GTMKAC	2 cut(s)	485, 965
Fnu4HI	GCNGC	3 cut(s)	38, 514, 816
FokI	GGATG	4 cut(s)	481, 611, 892, 896
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	38, 514, 816
FspBI	CTAG	3 cut(s)	155, 264, 641
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	38, 514, 816
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	5 cut(s)	5, 40, 171, 476, 594
HapII	CCGG	1 cut(s)	803
HgaI	GACGC	2 cut(s)	269, 1057
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	1068
Hin1II	CATG	3 cut(s)	223, 475, 928
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	6 cut(s)	270, 298, 311, 806, 1025, 1084
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	2 cut(s)	801, 922
Hpy166II	GTNNAC	4 cut(s)	486, 891, 913, 966
Hpy188I	TCNGA	1 cut(s)	853
Hpy188III	TCNNGA	5 cut(s)	119, 502, 544, 741, 1081
Hpy8I	GTNNAC	4 cut(s)	486, 891, 913, 966
HpyAV	CCTTC	3 cut(s)	424, 529, 777
HpyCH4III	ACNGT	2 cut(s)	92, 779
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	494, 752, 815, 928
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1065
HpyF3I	CTNAG	4 cut(s)	212, 695, 726, 1079
HpySE526I	ACGT	1 cut(s)	43
Hsp92I	GRCGYC	1 cut(s)	1068
Hsp92II	CATG	3 cut(s)	223, 475, 928
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	94, 121, 921
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	2 cut(s)	525, 827
LweI	GCATC	2 cut(s)	503, 988
MaeI	CTAG	3 cut(s)	155, 264, 641
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	2 cut(s)	400, 687
MalI	GATC	3 cut(s)	96, 123, 923
MboI	GATC	3 cut(s)	94, 121, 921
MboII	GAAGA	6 cut(s)	514, 807, 917, 1002, 1020, 1063
MfeI	CAATTG	2 cut(s)	489, 1053
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	213, 725
MluCI	AATT	6 cut(s)	114, 489, 633, 819, 940, 1053
MlyI	GAGTC	2 cut(s)	320, 1093
MmeI	TCCRAC	2 cut(s)	139, 540
MnlI	CCTC	6 cut(s)	184, 458, 624, 870, 901, 969
MroXI	GAANNNNTTC	2 cut(s)	539, 633
MseI	TTAA	1 cut(s)	570
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	3 cut(s)	596, 803, 830
MunI	CAATTG	2 cut(s)	489, 1053
Mva1269I	GAATGC	2 cut(s)	145, 1017
MvaI	CCWGG	2 cut(s)	596, 830
MwoI	GCNNNNNNNGC	1 cut(s)	1065
NciI	CCSGG	1 cut(s)	803
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	3 cut(s)	94, 121, 921
NlaIII	CATG	3 cut(s)	223, 475, 928
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	687
NspV	TTCGAA	1 cut(s)	824
PaqCI	CACCTGC	1 cut(s)	820
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	2 cut(s)	145, 1017
PdmI	GAANNNNTTC	2 cut(s)	539, 633
PfeI	GAWTC	4 cut(s)	270, 298, 806, 1025
Pfl23II	CGTACG	1 cut(s)	451
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	39, 515, 817
PleI	GAGTC	2 cut(s)	319, 1092
PpsI	GAGTC	2 cut(s)	319, 1092
PshAI	GACNNNNGTC	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	594, 828
PspGI	CCWGG	2 cut(s)	594, 828
PspLI	CGTACG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	4, 170
PsrI	GAACNNNNNNTAC	2 cut(s)	985, 1017
PstI	CTGCAG	2 cut(s)	754, 817
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	453, 619, 1035
RsaNI	GTAC	3 cut(s)	452, 618, 1034
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	3 cut(s)	38, 514, 816
Sau3AI	GATC	3 cut(s)	94, 121, 921
Sau96I	GGNCC	2 cut(s)	4, 170
SchI	GAGTC	2 cut(s)	320, 1093
ScrFI	CCNGG	3 cut(s)	596, 803, 830
SduI	GDGCHC	2 cut(s)	213, 725
SfaNI	GCATC	2 cut(s)	503, 988
SfcI	CTRYAG	2 cut(s)	750, 813
SfuI	TTCGAA	1 cut(s)	824
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	6 cut(s)	114, 489, 633, 819, 940, 1053
SsiI	CCGC	5 cut(s)	37, 58, 143, 958, 1059
SspMI	CTAG	3 cut(s)	155, 264, 641
StyD4I	CCNGG	3 cut(s)	594, 801, 828
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	92, 779
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	6 cut(s)	97, 268, 276, 627, 824, 1023
TasI	AATT	6 cut(s)	114, 489, 633, 819, 940, 1053
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	4 cut(s)	270, 298, 806, 1025
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	687
TseI	GCWGC	2 cut(s)	513, 815
Tsp45I	GTSAC	1 cut(s)	687
TspDTI	ATGAA	3 cut(s)	208, 406, 594
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	47
XapI	RAATTY	2 cut(s)	114, 633
XmiI	GTMKAC	2 cut(s)	485, 965
XmnI	GAANNNNTTC	2 cut(s)	539, 633
XspI	CTAG	3 cut(s)	155, 264, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.