Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003308

Physical Location & Seq

Genomic Coordinates Forward (+)

58838423 .. 58838854

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0462800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCGCGGTGGCACAACCCGGACAAACCTTTCGAAGACCGGGTGGAGCGAGCCATCCACCAGCACATCCGCCTCCTGCACCGCTCTGGTTCCAGGTTCTTCGTTTTAGGACACACCAAAAATGTGTACACTGTCACATTGTCCACCGAGTCAACATGCTCGTGCCCTGACGTTGTCTCCCCCTGCAAGCACCTGCTGTTTGTGTATCTCCAAGTATTGGGTGTTTGTATCGACACCCGTTATGTTAGGAGGAGCGCACTCCATCCAAGCGAGGTGAGCTGGCTGTTGGGGCTGCCCATGTCACGCGCATCACTGGCTGAGGATAGTGTCCGACACTGGTTTCATCAGATCCATCCTCTTGGAAAGAAACAGCAGCAGCAGCCAGCAGGAGAGGTCTTTCTCATCAAGGCCAAGCCTAAGTCTGCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

143

Amino Acids

16.42

Weight (kDa)

9.69

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	43 - 71	3.8e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73980 AT1G73980 AT1G73980
fragaria_vesca	FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040
malus_domestica	MD06G1207600.v1.1 MD06G1207800.v1.1 MD14G1218200.v1.1
prunus_persica	Prupe.5G212000_v2.0.a1 Prupe.5G212000_v2.0.a1
pyrus_communis	pycom06g18560 pycom06g18570 pycom14g18090
rosa_chinensis	RchiOBHm_Chr7g0184091
rosa_laevigata	RLG00000005001
rosa_multiflora	Rmu_sc0004712.1_g000008 Rmu_sc0025350.1_g000011
rosa_roxburghii	Rroxscaffold_3G00269890
rosa_rugosa	Rorug06G0462800 Rorug06G0462900
rosa_samantha	Rh7AG082900 Rh7BG064100 Rh7CG064800 Rh7DG064300
rosa_wichuraiana	Rw7G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	201
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	84
AccII	CGCG	2 cut(s)	7, 306
AciI	CCGC	3 cut(s)	7, 70, 82
AclWI	GGATC	1 cut(s)	343
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	1 cut(s)	279
AluI	AGCT	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	343
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	4 cut(s)	292, 373, 376, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspLEI	GCGC	2 cut(s)	257, 308
AsuC2I	CCSGG	2 cut(s)	20, 41
AsuHPI	GGTGA	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	279, 385, 388, 391
BccI	CCATC	3 cut(s)	62, 270, 360
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	2 cut(s)	20, 41
BcoDI	GTCTC	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	201
BisI	GCNGC	4 cut(s)	293, 374, 377, 380
BlsI	GCNGC	4 cut(s)	294, 375, 378, 381
Bme1390I	CCNGG	3 cut(s)	20, 41, 94
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	3 cut(s)	20, 41, 94
BmsI	GCATC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	33
BpuMI	CCSGG	2 cut(s)	20, 41
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	318, 341
BseBI	CCWGG	1 cut(s)	94
BseGI	GGATG	4 cut(s)	54, 66, 262, 352
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	318, 341
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	279, 385, 388, 391
BsgI	GTGCAG	1 cut(s)	62
Bsh1236I	CGCG	2 cut(s)	7, 306
BshFI	GGCC	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	20, 40
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	3 cut(s)	7, 70, 82
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	7, 306
BspLI	GGNNCC	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	33
BsrBI	CCGCTC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	318, 341
BssMI	GATC	1 cut(s)	348
BssSI	CACGAG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	4 cut(s)	51, 188, 281, 384
BstDEI	CTNAG	2 cut(s)	318, 417
BstF5I	GGATG	4 cut(s)	54, 66, 262, 352
BstFNI	CGCG	2 cut(s)	7, 306
BstHHI	GCGC	2 cut(s)	257, 308
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	4 cut(s)	276, 289, 314, 379
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	3 cut(s)	18, 39, 92
BstSLI	GKGCMC	1 cut(s)	167
BstUI	CGCG	2 cut(s)	7, 306
BstV1I	GCAGC	4 cut(s)	279, 385, 388, 391
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	410
BtsCI	GGATG	4 cut(s)	54, 66, 262, 352
BtsIMutI	CAGTG	3 cut(s)	129, 311, 334
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	4 cut(s)	51, 188, 281, 384
CfoI	GCGC	2 cut(s)	257, 308
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	156, 298
CviJI	RGCY	8 cut(s)	53, 279, 283, 292, 317, 382, 410, 415
CviKI_1	RGCY	8 cut(s)	53, 279, 283, 292, 317, 382, 410, 415
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	318, 417
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	159, 301
FaiI	YATR	3 cut(s)	157, 243, 299
FatI	CATG	2 cut(s)	155, 297
Fnu4HI	GCNGC	4 cut(s)	293, 374, 377, 380
FokI	GGATG	4 cut(s)	41, 53, 249, 339
Fsp4HI	GCNGC	4 cut(s)	293, 374, 377, 380
GlaI	GCGC	2 cut(s)	256, 307
GluI	GCNGC	4 cut(s)	293, 374, 377, 380
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	2 cut(s)	20, 40
HhaI	GCGC	2 cut(s)	257, 308
Hin1II	CATG	2 cut(s)	159, 301
Hin6I	GCGC	2 cut(s)	255, 306
HinP1I	GCGC	2 cut(s)	255, 306
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	2 cut(s)	20, 40
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	4 cut(s)	127, 129, 144, 153
Hpy188I	TCNGA	2 cut(s)	332, 348
Hpy8I	GTNNAC	4 cut(s)	127, 129, 144, 153
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	79, 186
HpyF10VI	GCNNNNNNNGC	4 cut(s)	276, 289, 314, 379
HpyF3I	CTNAG	2 cut(s)	318, 417
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	159, 301
HspAI	GCGC	2 cut(s)	255, 306
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	46, 252
Lsp1109I	GCAGC	4 cut(s)	279, 385, 388, 391
LweI	GCATC	1 cut(s)	317
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	133, 300
MalI	GATC	1 cut(s)	350
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	47, 91
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	6 cut(s)	83, 243, 265, 313, 366, 385
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	2 cut(s)	20, 40
MspR9I	CCNGG	3 cut(s)	20, 41, 94
MvaI	CCWGG	1 cut(s)	94
MvnI	CGCG	2 cut(s)	7, 306
MwoI	GCNNNNNNNGC	4 cut(s)	276, 289, 314, 379
NciI	CCSGG	2 cut(s)	20, 41
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	2 cut(s)	159, 301
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	2 cut(s)	133, 300
NspI	RCATGY	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	33
PaqCI	CACCTGC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	294, 375, 378, 381
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	348
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	160
SatI	GCNGC	4 cut(s)	293, 374, 377, 380
Sau3AI	GATC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	20, 41, 94
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	7 cut(s)	31, 98, 174, 195, 276, 281, 396
SfaNI	GCATC	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	160
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	3 cut(s)	7, 70, 82
StyD4I	CCNGG	3 cut(s)	18, 39, 92
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	33, 231
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	126
TscAI	CASTG	3 cut(s)	136, 318, 341
TseFI	GTSAC	2 cut(s)	133, 300
TseI	GCWGC	4 cut(s)	292, 373, 376, 379
Tsp45I	GTSAC	2 cut(s)	133, 300
TspDTI	ATGAA	1 cut(s)	332
TspRI	CASTG	3 cut(s)	136, 318, 341
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	217
XceI	RCATGY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.