Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003308

Physical Location & Seq

Genomic Coordinates Forward (+)

22274250 .. 22275918

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAGTACAAAATATTTATGGTGGTTCTCATCCAGAATTTTGGTACAGGTGTATCCTATGTACAAGGCCTTTATCGAGCCAGACCTTCAGACAGCACATATAAAAATCACCAACAAGTTTAATCCCTTCACTGGTTTTCAGAACCCTATTTATATTTTAAAGCCAACAAAGGAAGTGACAGTGGATCAAATCAAGGCTGTTATATCGGAAGATCACAAAGAAAGAACAGAAGAAACTTATGACATATATCTTTTACCACCAGGTGAAGATCCTGAAGCGTGTCAGTCGTATCTAAGGATGAGGAACAGAGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTGACAGATAGTCCCTTCATAATATCGCCCAGAATAACTTTTGAAGTTAGCGTACGCCTGCTTGGAGGTCTCATGGCCTTGGGGTATACAATTGCATCCATCTTGAAACGAAGCAGCCATATCTTCTGTGACGACAAGGTTTGTGTGAAAGTTGATTGGTTGGAGCAACTTAATCGTCAATATGTTCAGGTGCAAGGAAAGGAGCGGTTATATGTTAAAGATATTGCACAGAAGCTCGGCCTGGATGGTTCATATGTTCCTCGTACTTACATCGAACAAATTCAGCTGGAGAAACTTGTAAATGATGTTATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

220

Amino Acids

25.68

Weight (kDa)

6.33

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73980 AT1G73980 AT1G73980
fragaria_vesca	FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040
malus_domestica	MD06G1207600.v1.1 MD06G1207800.v1.1 MD14G1218200.v1.1
prunus_persica	Prupe.5G212000_v2.0.a1 Prupe.5G212000_v2.0.a1
pyrus_communis	pycom06g18560 pycom06g18570 pycom14g18090
rosa_chinensis	RchiOBHm_Chr7g0184091
rosa_laevigata	RLG00000005001
rosa_multiflora	Rmu_sc0004712.1_g000008 Rmu_sc0025350.1_g000011
rosa_roxburghii	Rroxscaffold_3G00269890
rosa_rugosa	Rorug06G0462800 Rorug06G0462900
rosa_samantha	Rh7AG082900 Rh7BG064100 Rh7CG064800 Rh7DG064300
rosa_wichuraiana	Rw7G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	428
AciI	CCGC	1 cut(s)	547
AclWI	GGATC	2 cut(s)	192, 263
AcsI	RAATTY	2 cut(s)	36, 621
AcuI	CTGAAG	2 cut(s)	71, 294
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	5 cut(s)	7, 45, 62, 396, 607
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	386, 448
AhdI	GACNNNNNGTC	1 cut(s)	351
AjnI	CCWGG	2 cut(s)	259, 582
AluBI	AGCT	2 cut(s)	577, 628
AluI	AGCT	2 cut(s)	577, 628
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	192, 263
AoxI	GGCC	3 cut(s)	66, 417, 580
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	2 cut(s)	36, 621
Asp700I	GAANNNNTTC	1 cut(s)	621
AsuHPI	GGTGA	3 cut(s)	100, 275, 355
BaeI	ACNNNNGTAYC	4 cut(s)	35, 35, 68, 68
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvI	GCAGC	1 cut(s)	468
BccI	CCATC	3 cut(s)	305, 449, 581
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciT130I	CCWGG	2 cut(s)	261, 584
BciVI	GTATCC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	457
BlsI	GCNGC	1 cut(s)	458
Bme1390I	CCNGG	2 cut(s)	261, 584
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	261, 584
BmsI	GCATC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	650
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	261, 584
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	4 cut(s)	29, 303, 437, 592
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	468
BshFI	GGCC	3 cut(s)	68, 419, 582
BsiWI	CGTACG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	3 cut(s)	68, 419, 582
Bso31I	GGTCTC	1 cut(s)	416
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	3 cut(s)	184, 211, 268
BspACI	CCGC	1 cut(s)	547
BspANI	GGCC	3 cut(s)	68, 419, 582
BspPI	GGATC	2 cut(s)	192, 263
BspTNI	GGTCTC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	547
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	3 cut(s)	184, 211, 268
BssNAI	GTATAC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	261, 584
Bst4CI	ACNGT	1 cut(s)	181
BstAUI	TGTACA	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	4 cut(s)	29, 303, 437, 592
BstKTI	GATC	3 cut(s)	187, 214, 271
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	184, 211, 268
BstNI	CCWGG	2 cut(s)	261, 584
BstSCI	CCNGG	2 cut(s)	259, 582
BstV1I	GCAGC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	268
BstZ17I	GTATAC	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	68, 419, 582
BtsCI	GGATG	4 cut(s)	29, 303, 437, 592
BtsIMutI	CAGTG	2 cut(s)	129, 186
Cac8I	GCNNGC	1 cut(s)	401
CsiI	ACCWGGT	1 cut(s)	259
Csp6I	GTAC	5 cut(s)	6, 44, 61, 395, 606
CviAII	CATG	2 cut(s)	328, 415
CviJI	RGCY	9 cut(s)	68, 79, 163, 197, 419, 459, 577, 582, 628
CviKI_1	RGCY	9 cut(s)	68, 79, 163, 197, 419, 459, 577, 582, 628
CviQI	GTAC	5 cut(s)	6, 44, 61, 395, 606
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	3 cut(s)	186, 213, 270
DpnII	GATC	3 cut(s)	184, 211, 268
DraI	TTTAAA	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	263
DriI	GACNNNNNGTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	416
Eco57I	CTGAAG	2 cut(s)	71, 294
EcoRII	CCWGG	2 cut(s)	259, 582
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	2 cut(s)	331, 418
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	2 cut(s)	327, 414
FauNDI	CATATG	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	457
FokI	GGATG	4 cut(s)	16, 310, 424, 599
Fsp4HI	GCNGC	1 cut(s)	457
GluI	GCNGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	3 cut(s)	68, 419, 582
Hin1II	CATG	2 cut(s)	331, 418
HphI	GGTGA	3 cut(s)	100, 275, 355
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	3 cut(s)	90, 141, 208
Hpy188III	TCNNGA	3 cut(s)	33, 272, 445
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	3 cut(s)	95, 136, 367
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	437, 535, 569
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	331, 418
Kzo9I	GATC	3 cut(s)	184, 211, 268
LmnI	GCTCC	2 cut(s)	505, 544
Lsp1109I	GCAGC	1 cut(s)	468
LweI	GCATC	1 cut(s)	446
MabI	ACCWGGT	1 cut(s)	259
MaeIII	GTNAC	3 cut(s)	175, 343, 470
MalI	GATC	3 cut(s)	186, 213, 270
MbiI	CCGCTC	1 cut(s)	547
MboI	GATC	3 cut(s)	184, 211, 268
MboII	GAAGA	4 cut(s)	221, 242, 278, 457
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	3 cut(s)	36, 432, 621
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	4 cut(s)	294, 328, 401, 612
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	4 cut(s)	120, 158, 513, 558
MspA1I	CMGCKG	1 cut(s)	628
MspR9I	CCNGG	2 cut(s)	261, 584
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	2 cut(s)	261, 584
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	3 cut(s)	184, 211, 268
NlaIII	CATG	2 cut(s)	331, 418
NmeAIII	GCCGAG	1 cut(s)	558
NmuCI	GTSAC	3 cut(s)	175, 343, 470
PceI	AGGCCT	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	621
Pfl23II	CGTACG	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	259, 582
PspGI	CCWGG	2 cut(s)	259, 582
PspLI	CGTACG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	5 cut(s)	7, 45, 62, 396, 607
RsaNI	GTAC	5 cut(s)	6, 44, 61, 395, 606
SaqAI	TTAA	4 cut(s)	120, 158, 513, 558
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	3 cut(s)	184, 211, 268
ScrFI	CCNGG	2 cut(s)	261, 584
SetI	ASST	8 cut(s)	51, 87, 265, 412, 483, 534, 579, 630
SexAI	ACCWGGT	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	446
Sse9I	AATT	3 cut(s)	36, 432, 621
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	547
SspI	AATATT	1 cut(s)	14
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	259, 582
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	75, 615
TasI	AATT	3 cut(s)	36, 432, 621
TatI	WGTACW	2 cut(s)	5, 60
Tru1I	TTAA	4 cut(s)	120, 158, 513, 558
Tru9I	TTAA	4 cut(s)	120, 158, 513, 558
TscAI	CASTG	2 cut(s)	136, 186
TseFI	GTSAC	3 cut(s)	175, 343, 470
TseI	GCWGC	1 cut(s)	456
Tsp45I	GTSAC	3 cut(s)	175, 343, 470
TspDTI	ATGAA	2 cut(s)	349, 582
TspRI	CASTG	2 cut(s)	136, 186
XapI	RAATTY	2 cut(s)	36, 621
XmiI	GTMKAC	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.