Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003308

Physical Location & Seq

Genomic Coordinates Forward (+)

58843723 .. 58844865

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0462900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGGAGAGCGATGATGTCAGCGTGTCTCCCTCCAGTGGCGGCAACTTGGCTCGTAAAGTGGTGACGGTGGCTGCCGGAGAAGCTCACACTCTGGCCCTCACAGGTGATGGGTATGTGTATTCATGGGGGAGAGGCATGTTTGGGCGGCTCGGAACCGGTTCGGAATCCGACGAGCTCTGTCCGGTTCGGGTCAAATTTAAACCAGAAAAGGGGCTCAAATTTGTGGGAGTGGCTGCTGGTGCTTACCACAGTCTTGCTCTGGCTGATGATGGGTCCATTTGGTGTTGGGGTTACAACATCTGTATCCTTCATAACAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

CYTH PRK

Protein Analysis

108

Amino Acids

11.48

Weight (kDa)

5.84

Isoelectric Point (pI)

25.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_RLD	PF25390	14 - 100	4.1e-23	RCC1-like domain
RCC1_2	PF13540	21 - 46	5.9e-09	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	37 - 88	1.3e-16	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	76 - 100	2.3e-09	Regulator of chromosome condensation (RCC1) repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73980 AT1G73980 AT1G73980
fragaria_vesca	FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040 FvH4_5g13040
malus_domestica	MD06G1207600.v1.1 MD06G1207800.v1.1 MD14G1218200.v1.1
prunus_persica	Prupe.5G212000_v2.0.a1 Prupe.5G212000_v2.0.a1
pyrus_communis	pycom06g18560 pycom06g18570 pycom14g18090
rosa_chinensis	RchiOBHm_Chr7g0184091
rosa_laevigata	RLG00000005001
rosa_multiflora	Rmu_sc0004712.1_g000008 Rmu_sc0025350.1_g000011
rosa_roxburghii	Rroxscaffold_3G00269890
rosa_rugosa	Rorug06G0462800 Rorug06G0462900
rosa_samantha	Rh7AG082900 Rh7BG064100 Rh7CG064800 Rh7DG064300
rosa_wichuraiana	Rw7G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 148
AcsI	RAATTY	2 cut(s)	197, 221
AfiI	CCNNNNNNNGG	2 cut(s)	38, 212
AgeI	ACCGGT	1 cut(s)	158
AluBI	AGCT	2 cut(s)	86, 178
AluI	AGCT	2 cut(s)	86, 178
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	74, 236
ApoI	RAATTY	2 cut(s)	197, 221
AsiGI	ACCGGT	1 cut(s)	158
Asp700I	GAANNNNTTC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	97, 276
AsuHPI	GGTGA	2 cut(s)	76, 119
AvaII	GGWCC	1 cut(s)	276
BaeI	ACNNNNGTAYC	2 cut(s)	289, 322
BanII	GRGCYC	2 cut(s)	180, 219
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	61, 223
BccI	CCATC	2 cut(s)	104, 266
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	317
BisI	GCNGC	4 cut(s)	43, 75, 149, 237
BlsI	GCNGC	4 cut(s)	44, 76, 150, 238
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	2 cut(s)	97, 276
BmiI	GGNNCC	2 cut(s)	157, 277
BpmI	CTGGAG	1 cut(s)	19
BsaWI	WCCGGW	2 cut(s)	158, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 212
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	38, 212
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	61, 223
BshFI	GGCC	1 cut(s)	98
BshTI	ACCGGT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	78, 159, 185
BslI	CCNNNNNNNGG	2 cut(s)	38, 212
BsmAI	GTCTC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	180, 219
BspACI	CCGC	2 cut(s)	42, 148
BspANI	GGCC	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	157, 277
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	70, 254
BstMAI	GTCTC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 242
BstNSI	RCATGY	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	61, 223
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	98
BtgZI	GCGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	97, 276
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	2 cut(s)	126, 139
CviJI	RGCY	9 cut(s)	53, 74, 86, 98, 151, 178, 217, 236, 266
CviKI_1	RGCY	9 cut(s)	53, 74, 86, 98, 151, 178, 217, 236, 266
DraI	TTTAAA	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	180, 219
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT38I	GRGCYC	2 cut(s)	180, 219
FaeI	CATG	2 cut(s)	129, 142
FaiI	YATR	4 cut(s)	117, 127, 140, 315
FatI	CATG	2 cut(s)	125, 138
Fnu4HI	GCNGC	4 cut(s)	43, 75, 149, 237
FriOI	GRGCYC	2 cut(s)	180, 219
Fsp4HI	GCNGC	4 cut(s)	43, 75, 149, 237
GluI	GCNGC	4 cut(s)	43, 75, 149, 237
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	3 cut(s)	78, 159, 185
Hin1II	CATG	2 cut(s)	129, 142
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	3 cut(s)	78, 159, 185
HphI	GGTGA	2 cut(s)	76, 119
Hpy188I	TCNGA	3 cut(s)	155, 166, 172
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	70, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 242
Hsp92II	CATG	2 cut(s)	129, 142
Lsp1109I	GCAGC	2 cut(s)	61, 223
MaeIII	GTNAC	2 cut(s)	64, 293
MhlI	GDGCHC	2 cut(s)	180, 219
MluCI	AATT	2 cut(s)	197, 221
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	43, 110, 128
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	201
MspI	CCGG	3 cut(s)	78, 159, 185
MwoI	GCNNNNNNNGC	2 cut(s)	83, 242
NlaIII	CATG	2 cut(s)	129, 142
NlaIV	GGNNCC	2 cut(s)	157, 277
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	44, 76, 150, 238
Psp124BI	GAGCTC	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	157, 277
PspPI	GGNCC	2 cut(s)	97, 276
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	43, 75, 149, 237
Sau96I	GGNCC	2 cut(s)	97, 276
SduI	GDGCHC	2 cut(s)	180, 219
SetI	ASST	3 cut(s)	88, 109, 180
SinI	GGWCC	1 cut(s)	276
Sse9I	AATT	2 cut(s)	197, 221
SsiI	CCGC	2 cut(s)	42, 148
SstI	GAGCTC	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	70, 254
TasI	AATT	2 cut(s)	197, 221
TauI	GCSGC	2 cut(s)	45, 151
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	74, 236
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	114, 302
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	276
XapI	RAATTY	2 cut(s)	197, 221
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.