MD06G1236200.v1.1

dipeptidyl-peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0017378
Physical Location & Seq
Forward (+)
36758565 .. 36759345
781 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1236200.v1.1.491

Sequence Viewer

Length: 369 bp
ATGGCTGGCCAAGTCAACTCTCCTGCTGTCAAAGCAAACGCGGGGCATGAAGCGGTACCTACTGTCGAGACGGAAGTGACAGCAGAAACGCCGATTCATCCCCAAGATCAGAATCTCAGCATTACTCCACAGAAGGTTACTTCGGCCTTTCATTCATGGGAAGTCGAGCTCGACATTCTCCTCTCAAGTACTTCTACAGTAGCTGGGCCATCTGCCACGTCGGCCGAGCCTTCCACGCCAGCGGTCGAATCCAATGTCTTCGCCAAGTTGCAGGAACTTCTATCCATTTTGACCTTACAAGTCCTTCAATGTAAAGGCCTCAACTCTGTAGGAGAGTGCCTGAACGATCTTGCACCGGTGGCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko01100 map00260 map01100
Pfam Domains
Protein Families
Peptidase_S28

Protein Analysis

123

Amino Acids

12.69

Weight (kDa)

4.43

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 41, 53, 242
AcoI YGGCCR 2 cut(s) 7, 222
AfaI GTAC 2 cut(s) 57, 190
AgeI ACCGGT 1 cut(s) 355
AgsI TTSAA 1 cut(s) 308
AjiI CACGTC 1 cut(s) 219
AluBI AGCT 2 cut(s) 169, 203
AluI AGCT 2 cut(s) 169, 203
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 5 cut(s) 7, 144, 206, 222, 316
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AsiGI ACCGGT 1 cut(s) 355
Asp718I GGTACC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 9
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 171
BccI CCATC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 62
BfmI CTRYAG 2 cut(s) 195, 327
BglI GCCNNNNNGGC 1 cut(s) 221
BmcAI AGTACT 1 cut(s) 190
BmgBI CACGTC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 169
BsaBI GATNNNNATC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 111
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 111
BseMII CTCAG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 2 cut(s) 225, 246
BshFI GGCC 5 cut(s) 9, 146, 208, 224, 318
BshNI GGYRCC 1 cut(s) 55
BshTI ACCGGT 1 cut(s) 355
BsiEI CGRYCG 2 cut(s) 225, 246
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsnI GGCC 5 cut(s) 9, 146, 208, 224, 318
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 106, 346
BspACI CCGC 3 cut(s) 41, 53, 242
BspANI GGCC 5 cut(s) 9, 146, 208, 224, 318
BspCNI CTCAG 1 cut(s) 129
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
BssMI GATC 2 cut(s) 106, 346
Bst4CI ACNGT 2 cut(s) 64, 199
BstC8I GCNNGC 3 cut(s) 7, 240, 364
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 2 cut(s) 109, 349
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 106, 346
BstMCI CGRYCG 2 cut(s) 225, 246
BstMWI GCNNNNNNNGC 4 cut(s) 32, 221, 235, 359
BstSFI CTRYAG 2 cut(s) 195, 327
BstUI CGCG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 250
BstZI CGGCCG 1 cut(s) 222
BsuRI GGCC 5 cut(s) 9, 146, 208, 224, 318
BtrI CACGTC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 3 cut(s) 7, 240, 364
CaiI CAGNNNCTG 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 56, 189
CspAI ACCGGT 1 cut(s) 355
CviAII CATG 2 cut(s) 47, 156
CviQI GTAC 2 cut(s) 56, 189
DdeI CTNAG 1 cut(s) 116
DpnI GATC 2 cut(s) 108, 348
DpnII GATC 2 cut(s) 106, 346
EaeI YGGCCR 2 cut(s) 7, 222
EagI CGGCCG 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 2 cut(s) 50, 159
FaiI YATR 2 cut(s) 48, 157
FatI CATG 2 cut(s) 46, 155
FauI CCCGC 1 cut(s) 34
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 171
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 5 cut(s) 9, 146, 208, 224, 318
HapII CCGG 1 cut(s) 356
Hin1II CATG 2 cut(s) 50, 159
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 3 cut(s) 94, 112, 248
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 3 cut(s) 127, 240, 314
HpyCH4III ACNGT 2 cut(s) 64, 199
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 271, 353
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 221, 235, 359
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 50, 159
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 106, 346
LpnPI CCDG 5 cut(s) 36, 189, 252, 257, 353
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 76, 136
MalI GATC 2 cut(s) 108, 348
MboI GATC 2 cut(s) 106, 346
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 9
MluNI TGGCCA 1 cut(s) 9
MnlI CCTC 2 cut(s) 191, 329
Mox20I TGGCCA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 4 cut(s) 32, 221, 235, 359
NdeII GATC 2 cut(s) 106, 346
NlaIII CATG 2 cut(s) 50, 159
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 318
PfeI GAWTC 3 cut(s) 94, 112, 248
PinAI ACCGGT 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 57, 190
RsaNI GTAC 2 cut(s) 56, 189
SacI GAGCTC 1 cut(s) 171
Sau3AI GATC 2 cut(s) 106, 346
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 190
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 61, 138, 171, 205, 221, 296
SfcI CTRYAG 2 cut(s) 195, 327
SgrAI CRCCGGYG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SseBI AGGCCT 1 cut(s) 318
SsiI CCGC 3 cut(s) 41, 53, 242
SstI GAGCTC 1 cut(s) 171
StuI AGGCCT 1 cut(s) 318
TaaI ACNGT 2 cut(s) 64, 199
TaiI ACGT 1 cut(s) 221
TaqI TCGA 4 cut(s) 66, 165, 171, 246
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 3 cut(s) 94, 112, 248
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 4 cut(s) 63, 86, 140, 144
TspGWI ACGGA 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.