Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0017378

Physical Location & Seq

Genomic Coordinates Forward (+)

6986853 .. 6987215

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAAAATGTTGCCTATTTGTCCGATCTCCTAAAGTGGACTCAGCAACATTTTACCACTTTTGAACTAGCGCTCCGAGCCGAGGACAACCTGAAGACGAGGAAGACCGCGTATGAAGCCAACCGGCCAGAGGTCGAGGCAATAAAAACAAAGAAGGCACAGATGATCGGTTTTGATTGTCAAATTTCTGAGCTTCAGCATCAAATCACCGAGCTTCAACAACAAAGGTCGGTTGTTGCTTCAGAGCTCGAGAGGGATTTTGAGGCGAACAAGGCTCGATTAACGACTTTCGCAGTCAGCATAAAGCAGATCCAACAGCTTCAACTCAATAAAAAGACGAGGCAGGCCGATCGATCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001525 GO:0001568 GO:0001944 GO:0002155 GO:0002254 GO:0002353 GO:0002526 GO:0003008 GO:0003013 GO:0003073 GO:0003085 GO:0003674 GO:0003824 GO:0004177 GO:0005575 GO:0005623 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0008233 GO:0008238 GO:0008239 GO:0009611 GO:0009653 GO:0009966 GO:0010594 GO:0010632 GO:0010646 GO:0016787 GO:0019222 GO:0019538 GO:0023051 GO:0030334 GO:0031323 GO:0032501 GO:0032502 GO:0032879 GO:0033500 GO:0035239 GO:0035295 GO:0040012 GO:0042060 GO:0042592 GO:0042593 GO:0043170 GO:0043535 GO:0044238 GO:0044464 GO:0045178 GO:0045776 GO:0048514 GO:0048583 GO:0048646 GO:0048731 GO:0048856 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051239 GO:0051270 GO:0060055 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0072358 GO:0072359 GO:0072376 GO:0097009 GO:0140096 GO:1901564 GO:2000145 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04614 ko04974 map04614 map04974

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

121

Amino Acids

14.03

Weight (kDa)

8.73

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017378)

Species	Orthologous Gene IDs
malus_domestica	MD06G1236200.v1.1
pyrus_communis	pycom01g06570 pycom04g11150 pycom12g10420 pycom12g16720 pycom13g18630 pycom13g27900 pycom15g33860 pycom16g12730 pycom17g11410 pycom520g00400 pycom520g00800
rosa_chinensis	RchiOBHm_Chr6g0263221

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	3 cut(s)	113, 179, 225
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	82, 130
AgsI	TTSAA	3 cut(s)	65, 218, 323
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	4 cut(s)	193, 214, 247, 319
AluI	AGCT	4 cut(s)	193, 214, 247, 319
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	248
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	2 cut(s)	125, 345
ApoI	RAATTY	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	101, 110
Bbv12I	GWGCWC	1 cut(s)	249
BcgI	CGANNNNNNTGC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	101, 110
Bsa29I	ATCGAT	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 130
Bse118I	RCCGGY	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	82, 130
BseMII	CTCAG	2 cut(s)	56, 180
Bsh1236I	CGCG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	2 cut(s)	127, 347
BshVI	ATCGAT	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	82, 130
BsnI	GGCC	2 cut(s)	127, 347
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	25, 165, 309, 349, 353
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	127, 347
BspCNI	CTCAG	2 cut(s)	55, 181
BspDI	ATCGAT	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	110
BspPI	GGATC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	5 cut(s)	25, 165, 309, 349, 353
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	42, 189
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	5 cut(s)	28, 168, 312, 352, 356
BstMBI	GATC	5 cut(s)	25, 165, 309, 349, 353
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 116, 272
BstUI	CGCG	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	101, 110
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	127, 347
BsuTUI	ATCGAT	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	352
CviJI	RGCY	9 cut(s)	80, 119, 127, 193, 214, 247, 275, 319, 347
CviKI_1	RGCY	9 cut(s)	80, 119, 127, 193, 214, 247, 275, 319, 347
DdeI	CTNAG	2 cut(s)	42, 189
DpnI	GATC	5 cut(s)	27, 167, 311, 351, 355
DpnII	GATC	5 cut(s)	25, 165, 309, 349, 353
EaeI	YGGCCR	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco47III	AGCGCT	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	3 cut(s)	113, 179, 225
Eco88I	CYCGRG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	249
FaiI	YATR	3 cut(s)	114, 302, 358
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	127, 347
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	4 cut(s)	25, 77, 190, 244
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 116, 272
HpyF3I	CTNAG	2 cut(s)	42, 189
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	5 cut(s)	25, 165, 309, 349, 353
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	4 cut(s)	104, 137, 141, 329
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	68
MalI	GATC	5 cut(s)	27, 167, 311, 351, 355
MboI	GATC	5 cut(s)	25, 165, 309, 349, 353
MboII	GAAGA	2 cut(s)	106, 115
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	7 cut(s)	76, 93, 124, 130, 246, 256, 333
MseI	TTAA	1 cut(s)	281
MspI	CCGG	1 cut(s)	124
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	77, 116, 272
NdeII	GATC	5 cut(s)	25, 165, 309, 349, 353
NmeAIII	GCCGAG	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	248
Ple19I	CGATCG	1 cut(s)	352
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	309
PvuI	CGATCG	1 cut(s)	352
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	281
Sau3AI	GATC	5 cut(s)	25, 165, 309, 349, 353
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	93, 135, 195, 216, 230, 249, 321
SfaNI	GCATC	1 cut(s)	208
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	249
TaqI	TCGA	4 cut(s)	135, 249, 277, 352
TasI	AATT	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	129
XapI	RAATTY	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.