pycom17g11410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0017378
Physical Location & Seq
Forward (+)
8951588 .. 8955337
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g11410.1

Sequence Viewer

Length: 366 bp
ATGCTTCTTGGGCGGCTGATTCTGCGGCAGCAGTGCTGTTTATCCAAACTGAAGCTCCCCATTCCTCCGCAGGAAGTCTCTTCGGCCTTTGTAAGTCTTTCTTTTTTTTGTGTTGATTCTCTTTTGATACATGTTTTTAAGACCATTAAATGTCAGGTGCCCGAACATTCATTTCACCGGCAATTTTATGCGCCGAGGGGTGTTGTTTATATTTCCTGGCCGCCATCGTGGCCATCAAATGTAGATGACCTCCATCGGCCGCGTGAATTGCGTAGCGGTCTGAGGCACTGGGCTCGGCCATTAAGTTCCCTGGGTTCGAGCAATGACCCAGAGGGCATGGCCGAAGTCTCATCTCAGCAGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

9.13

Isoelectric Point (pI)

50.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 157
AccII CGCG 1 cut(s) 262
AciI CCGC 6 cut(s) 13, 25, 68, 221, 260, 276
AcoI YGGCCR 5 cut(s) 218, 230, 257, 296, 339
AcuI CTGAAG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 130
AjnI CCWGG 2 cut(s) 215, 309
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 82, 352
AoxI GGCC 6 cut(s) 84, 218, 230, 257, 296, 339
ApeKI GCWGC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 162
BalI TGGCCA 1 cut(s) 232
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 40
BccI CCATC 3 cut(s) 232, 241, 261
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 2 cut(s) 217, 311
BcoDI GTCTC 2 cut(s) 82, 352
BfuAI ACCTGC 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 229
BisI GCNGC 5 cut(s) 14, 26, 29, 221, 260
BlsI GCNGC 5 cut(s) 15, 27, 30, 222, 261
Bme1390I CCNGG 2 cut(s) 217, 311
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 2 cut(s) 217, 311
BmrI ACTGGG 1 cut(s) 298
BmuI ACTGGG 1 cut(s) 298
BsaJI CCNNGG 3 cut(s) 194, 309, 310
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 2 cut(s) 217, 311
BseDI CCNNGG 3 cut(s) 194, 309, 310
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 262
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 6 cut(s) 86, 220, 232, 259, 298, 341
BshNI GGYRCC 1 cut(s) 157
BsiEI CGRYCG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 82, 352
BsnI GGCC 6 cut(s) 86, 220, 232, 259, 298, 341
Bsp1286I GDGCHC 2 cut(s) 162, 295
BspACI CCGC 6 cut(s) 13, 25, 68, 221, 260, 276
BspANI GGCC 6 cut(s) 86, 220, 232, 259, 298, 341
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 3 cut(s) 194, 309, 310
Bst2UI CCWGG 2 cut(s) 217, 311
Bst6I CTCTTC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 281, 354
BstFNI CGCG 1 cut(s) 262
BstHHI GCGC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 82, 352
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 4 cut(s) 10, 22, 229, 268
BstNI CCWGG 2 cut(s) 217, 311
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 2 cut(s) 215, 309
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 40
BstZI CGGCCG 1 cut(s) 257
BsuRI GGCC 6 cut(s) 86, 220, 232, 259, 298, 341
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 286
BveI ACCTGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 177
CviAII CATG 2 cut(s) 131, 337
CviJI RGCY 9 cut(s) 16, 55, 86, 220, 232, 259, 293, 298, 341
CviKI_1 RGCY 9 cut(s) 16, 55, 86, 220, 232, 259, 293, 298, 341
DdeI CTNAG 2 cut(s) 281, 354
EaeI YGGCCR 5 cut(s) 218, 230, 257, 296, 339
EagI CGGCCG 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 215, 309
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 2 cut(s) 134, 340
FaiI YATR 4 cut(s) 132, 189, 210, 338
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FatI CATG 2 cut(s) 130, 336
Fnu4HI GCNGC 5 cut(s) 14, 26, 29, 221, 260
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 5 cut(s) 14, 26, 29, 221, 260
GlaI GCGC 1 cut(s) 192
GluI GCNGC 5 cut(s) 14, 26, 29, 221, 260
HaeIII GGCC 6 cut(s) 86, 220, 232, 259, 298, 341
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 193
Hin1II CATG 2 cut(s) 134, 340
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 19, 116
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 22, 229, 268
HpyF3I CTNAG 2 cut(s) 281, 354
Hsp92II CATG 2 cut(s) 134, 340
HspAI GCGC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 40
MboII GAAGA 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 162, 295
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 2 cut(s) 182, 266
MluNI TGGCCA 1 cut(s) 232
MnlI CCTC 5 cut(s) 75, 189, 260, 276, 325
Mox20I TGGCCA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 232
MseI TTAA 3 cut(s) 138, 147, 302
Msp20I TGGCCA 1 cut(s) 232
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 217, 311
MvaI CCWGG 2 cut(s) 217, 311
MvnI CGCG 1 cut(s) 262
MwoI GCNNNNNNNGC 4 cut(s) 10, 22, 229, 268
NlaIII CATG 2 cut(s) 134, 340
NlaIV GGNNCC 1 cut(s) 159
NmeAIII GCCGAG 2 cut(s) 219, 274
NspI RCATGY 1 cut(s) 134
PasI CCCWGGG 1 cut(s) 310
PciI ACATGT 1 cut(s) 130
PfeI GAWTC 2 cut(s) 19, 116
PkrI GCNGC 5 cut(s) 15, 27, 30, 222, 261
PscI ACATGT 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 215, 309
PspGI CCWGG 2 cut(s) 215, 309
PspN4I GGNNCC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 138, 147, 302
SatI GCNGC 5 cut(s) 14, 26, 29, 221, 260
ScrFI CCNGG 2 cut(s) 217, 311
SduI GDGCHC 2 cut(s) 162, 295
SetI ASST 4 cut(s) 57, 159, 252, 363
Sse9I AATT 2 cut(s) 182, 266
SsiI CCGC 6 cut(s) 13, 25, 68, 221, 260, 276
StyD4I CCNGG 2 cut(s) 215, 309
TaqI TCGA 1 cut(s) 317
TasI AATT 2 cut(s) 182, 266
TauI GCSGC 4 cut(s) 16, 28, 223, 262
TfiI GAWTC 2 cut(s) 19, 116
Tru1I TTAA 3 cut(s) 138, 147, 302
Tru9I TTAA 3 cut(s) 138, 147, 302
TscAI CASTG 2 cut(s) 38, 293
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 2 cut(s) 38, 293
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.