pycom13g27900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0017378
Physical Location & Seq
Forward (+)
23977647 .. 23978949
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g27900.6

Sequence Viewer

Length: 1011 bp
ATGGCTGAGATAAAAGATAGCTTGTTCACGCTCAACATCGTTGTCTTGTGCAAGGAGGTAACCGATGGACTCGTCGGCCACCGAAATGTACAGCTTAAAAGGCCTACCGCGTCGAGGCGGTACGAGGGCTGGTCGCGTTGTAAGGGAGACCTTAAGTTGCCTAAGTCCTTAAATTTCAAAAGCGTAGAGAACGCTTTCATTTTGCCCGCCGAATTAGCTATAAAACGGAGGAGAAAATTTATTTTCCCGACTAAAGACTGGAATTGCTTCCTGGTCGTCGGAGGGTGCACAGGAAAACCCAAGAAGTTACTGGCCGATACACCGAAGGCATACTTGGCCGAGTTCATTTTGAGATTATGTAGGCGCATGCGAAGGAAAGCTTGCCGAAGATCATCCAAATGTGTTCGGCGACTCTTTGATTTGACTACCACATCGTCGATATATACTTCTATGACCATACCGATCAAATCATGGAATATGGCATTCATAGCTCATTGGTATGTCGCACCAGCGTTCTTGAGGCCGAATGGCATGACGACCCATTCGTACGTGCCGAGTGCCCCCGGCAACGACAATCGGTTTTGTGAACATCGGCTTCGGACAACATTTCATGATTGGCTGTGGCGTCAATTAAAAAATCTAAGATTGGCATCGAGTATTCATCTTTGGGAGACGCCGTTTCTCTTTAGCACCAGGACGATATTGGCCAGCCATTCGACGTATCGAGCGATTAGAATAAACCCAGCTTTTAAAAGTCGAACTAGTTCGTCTTTTATGCCGAGCTATACTTCGGTCGAGAATCGTCGAGGAGACTGGCGGAACGGCTTACAACCAGCTTTGATGCGTAATTCATGTTCAACAAAGGTTCGATCTAGTTGTTCAGTAATTTACAAAGTTTGGTTTTCATGGAGTAGGGTAACAACGGCCGACTGTCTTCGAGCTCGGCCAGTGCAGCCTGAACTTTGTCTAATGATAATACAGGGCTGTTATCTCCCTCGGTCAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

38.92

Weight (kDa)

10.48

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 110, 136
AciI CCGC 4 cut(s) 108, 118, 207, 817
AcoI YGGCCR 6 cut(s) 76, 312, 336, 705, 924, 944
AcsI RAATTY 3 cut(s) 172, 236, 1005
AcyI GRCGYC 2 cut(s) 625, 674
AfaI GTAC 3 cut(s) 90, 122, 548
AfiI CCNNNNNNNGG 1 cut(s) 114
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 178, 858
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 2 cut(s) 270, 692
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 9 cut(s) 21, 94, 218, 380, 491, 746, 783, 836, 941
AluI AGCT 9 cut(s) 21, 94, 218, 380, 491, 746, 783, 836, 941
Alw21I GWGCWC 2 cut(s) 290, 943
Alw26I GTCTC 3 cut(s) 141, 665, 804
Alw44I GTGCAC 1 cut(s) 286
AoxI GGCC 8 cut(s) 76, 101, 312, 336, 521, 705, 924, 944
ApaLI GTGCAC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 952
ApoI RAATTY 3 cut(s) 172, 236, 1005
ArsI GACNNNNNNTTYG 2 cut(s) 526, 558
Asp700I GAANNNNTTC 3 cut(s) 194, 266, 763
AspLEI GCGC 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 564
BaeGI GKGCMC 2 cut(s) 290, 562
BalI TGGCCA 1 cut(s) 707
BanII GRGCYC 1 cut(s) 943
BbsI GAAGAC 1 cut(s) 926
Bbv12I GWGCWC 2 cut(s) 290, 943
BbvI GCAGC 1 cut(s) 964
BccI CCATC 1 cut(s) 59
BceAI ACGGC 3 cut(s) 661, 838, 939
BciT130I CCWGG 2 cut(s) 272, 694
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 3 cut(s) 141, 665, 804
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 2 cut(s) 762, 873
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 953
BlsI GCNGC 1 cut(s) 954
Bme1390I CCNGG 3 cut(s) 272, 564, 694
BmrFI CCNGG 3 cut(s) 272, 564, 694
BmsI GCATC 2 cut(s) 659, 831
BpiI GAAGAC 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 649
BsaHI GRCGYC 2 cut(s) 625, 674
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 562, 995
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 4 cut(s) 263, 315, 818, 947
Bse8I GATNNNNATC 1 cut(s) 649
BseBI CCWGG 2 cut(s) 272, 694
BseDI CCNNGG 2 cut(s) 562, 995
BseGI GGATG 1 cut(s) 392
BseJI GATNNNNATC 1 cut(s) 649
BseLI CCNNNNNNNGG 1 cut(s) 114
BseNI ACTGG 4 cut(s) 263, 315, 818, 947
BseRI GAGGAG 2 cut(s) 244, 822
BseSI GKGCMC 2 cut(s) 290, 562
BseX3I CGGCCG 1 cut(s) 924
BseXI GCAGC 1 cut(s) 964
BseYI CCCAGC 1 cut(s) 742
BsgI GTGCAG 1 cut(s) 971
Bsh1236I CGCG 2 cut(s) 110, 136
Bsh1285I CGRYCG 2 cut(s) 795, 927
BshFI GGCC 8 cut(s) 78, 103, 314, 338, 523, 707, 926, 946
BsiEI CGRYCG 2 cut(s) 795, 927
BsiHKAI GWGCWC 2 cut(s) 290, 943
BsiSI CCGG 1 cut(s) 564
BsiWI CGTACG 1 cut(s) 546
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 3 cut(s) 141, 665, 804
BsmBI CGTCTC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 8 cut(s) 78, 103, 314, 338, 523, 707, 926, 946
Bso31I GGTCTC 1 cut(s) 141
Bsp1286I GDGCHC 3 cut(s) 290, 562, 943
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 3 cut(s) 389, 462, 869
BspACI CCGC 4 cut(s) 108, 118, 207, 817
BspANI GGCC 8 cut(s) 78, 103, 314, 338, 523, 707, 926, 946
BspFNI CGCG 2 cut(s) 110, 136
BspHI TCATGA 1 cut(s) 610
BspTI CTTAAG 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 4 cut(s) 263, 315, 818, 947
BssECI CCNNGG 2 cut(s) 562, 995
BssMI GATC 3 cut(s) 389, 462, 869
BssNI GRCGYC 2 cut(s) 625, 674
Bst2UI CCWGG 2 cut(s) 272, 694
Bst4CI ACNGT 1 cut(s) 932
BstACI GRCGYC 2 cut(s) 625, 674
BstAFI CTTAAG 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 4 cut(s) 207, 368, 382, 709
BstDEI CTNAG 3 cut(s) 6, 162, 641
BstEII GGTNACC 1 cut(s) 58
BstF5I GGATG 1 cut(s) 392
BstFNI CGCG 2 cut(s) 110, 136
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 3 cut(s) 392, 465, 872
BstMAI GTCTC 3 cut(s) 141, 665, 804
BstMBI GATC 3 cut(s) 389, 462, 869
BstMCI CGRYCG 2 cut(s) 795, 927
BstMWI GCNNNNNNNGC 5 cut(s) 100, 215, 335, 488, 952
BstNI CCWGG 2 cut(s) 272, 694
BstNSI RCATGY 1 cut(s) 370
BstPI GGTNACC 1 cut(s) 58
BstSCI CCNGG 3 cut(s) 270, 562, 692
BstSLI GKGCMC 2 cut(s) 290, 562
BstUI CGCG 2 cut(s) 110, 136
BstV1I GCAGC 1 cut(s) 964
BstV2I GAAGAC 1 cut(s) 926
BstZI CGGCCG 1 cut(s) 924
BsuRI GGCC 8 cut(s) 78, 103, 314, 338, 523, 707, 926, 946
BtsCI GGATG 1 cut(s) 392
BtsIMutI CAGTG 1 cut(s) 954
Cac8I GCNNGC 4 cut(s) 207, 368, 382, 709
CciI TCATGA 1 cut(s) 610
CfoI GCGC 1 cut(s) 366
CseI GACGC 3 cut(s) 99, 614, 682
Csp6I GTAC 3 cut(s) 89, 121, 547
CviAII CATG 6 cut(s) 367, 471, 532, 611, 852, 906
CviQI GTAC 3 cut(s) 89, 121, 547
DdeI CTNAG 3 cut(s) 6, 162, 641
DpnI GATC 3 cut(s) 391, 464, 871
DpnII GATC 3 cut(s) 389, 462, 869
DraI TTTAAA 1 cut(s) 751
EaeI YGGCCR 6 cut(s) 76, 312, 336, 705, 924, 944
EagI CGGCCG 1 cut(s) 924
EciI GGCGGA 1 cut(s) 832
Ecl136II GAGCTC 1 cut(s) 941
EclXI CGGCCG 1 cut(s) 924
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 943
Eco31I GGTCTC 1 cut(s) 141
Eco52I CGGCCG 1 cut(s) 924
Eco53kI GAGCTC 1 cut(s) 941
Eco91I GGTNACC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 941
EcoO65I GGTNACC 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 270, 692
EcoT38I GRGCYC 1 cut(s) 943
Esp3I CGTCTC 1 cut(s) 665
FaeI CATG 6 cut(s) 370, 474, 535, 614, 855, 909
FalI AAGNNNNNCTT 4 cut(s) 317, 349, 364, 396
FatI CATG 6 cut(s) 366, 470, 531, 610, 851, 905
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 953
FokI GGATG 1 cut(s) 379
FriOI GRGCYC 1 cut(s) 943
Fsp4HI GCNGC 1 cut(s) 953
FspBI CTAG 2 cut(s) 762, 873
GlaI GCGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 953
GsaI CCCAGC 1 cut(s) 746
HaeIII GGCC 8 cut(s) 78, 103, 314, 338, 523, 707, 926, 946
HapII CCGG 1 cut(s) 564
HgaI GACGC 3 cut(s) 99, 614, 682
HhaI GCGC 1 cut(s) 366
Hin1I GRCGYC 2 cut(s) 625, 674
Hin1II CATG 6 cut(s) 370, 474, 535, 614, 855, 909
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 3 cut(s) 69, 411, 799
HpaII CCGG 1 cut(s) 564
Hpy166II GTNNAC 3 cut(s) 27, 288, 587
Hpy188I TCNGA 2 cut(s) 281, 600
Hpy188III TCNNGA 4 cut(s) 247, 517, 611, 796
Hpy8I GTNNAC 3 cut(s) 27, 288, 587
Hpy99I CGWCG 6 cut(s) 77, 115, 281, 439, 721, 807
HpyAV CCTTC 2 cut(s) 319, 366
HpyCH4III ACNGT 1 cut(s) 932
HpyCH4IV ACGT 2 cut(s) 549, 719
HpyCH4V TGCA 3 cut(s) 51, 288, 952
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 215, 335, 488, 952
HpyF3I CTNAG 3 cut(s) 6, 162, 641
HpySE526I ACGT 2 cut(s) 549, 719
Hsp92I GRCGYC 2 cut(s) 625, 674
Hsp92II CATG 6 cut(s) 370, 474, 535, 614, 855, 909
HspAI GCGC 1 cut(s) 364
Kzo9I GATC 3 cut(s) 389, 462, 869
Lsp1109I GCAGC 1 cut(s) 964
LweI GCATC 2 cut(s) 659, 831
MaeI CTAG 2 cut(s) 762, 873
MaeII ACGT 2 cut(s) 549, 719
MaeIII GTNAC 3 cut(s) 58, 306, 916
MalI GATC 3 cut(s) 391, 464, 871
MboI GATC 3 cut(s) 389, 462, 869
MboII GAAGA 2 cut(s) 399, 926
MhlI GDGCHC 3 cut(s) 290, 562, 943
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 8 cut(s) 172, 212, 236, 262, 629, 847, 885, 1005
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 2 cut(s) 63, 405
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 8 cut(s) 49, 108, 118, 222, 275, 513, 800, 1005
Mox20I TGGCCA 1 cut(s) 707
MroXI GAANNNNTTC 3 cut(s) 194, 266, 763
MscI TGGCCA 1 cut(s) 707
MseI TTAA 5 cut(s) 96, 153, 170, 632, 750
MslI CAYNNNNRTG 3 cut(s) 84, 397, 498
Msp20I TGGCCA 1 cut(s) 707
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 3 cut(s) 272, 564, 694
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 2 cut(s) 272, 694
MvnI CGCG 2 cut(s) 110, 136
MwoI GCNNNNNNNGC 5 cut(s) 100, 215, 335, 488, 952
NciI CCSGG 1 cut(s) 564
NdeII GATC 3 cut(s) 389, 462, 869
NlaIII CATG 6 cut(s) 370, 474, 535, 614, 855, 909
NmeAIII GCCGAG 4 cut(s) 364, 579, 804, 922
NspI RCATGY 1 cut(s) 370
PaeI GCATGC 1 cut(s) 370
PagI TCATGA 1 cut(s) 610
PceI AGGCCT 1 cut(s) 103
PcsI WCGNNNNNNNCGW 3 cut(s) 542, 551, 725
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 3 cut(s) 194, 266, 763
PfeI GAWTC 1 cut(s) 799
Pfl23II CGTACG 1 cut(s) 546
PkrI GCNGC 1 cut(s) 954
PleI GAGTC 2 cut(s) 63, 405
PpsI GAGTC 2 cut(s) 63, 405
Ppu21I YACGTR 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 943
Psp6I CCWGG 2 cut(s) 270, 692
PspEI GGTNACC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 742
PspGI CCWGG 2 cut(s) 270, 692
PspLI CGTACG 1 cut(s) 546
PsrI GAACNNNNNNTAC 2 cut(s) 838, 870
RsaI GTAC 3 cut(s) 90, 122, 548
RsaNI GTAC 3 cut(s) 89, 121, 547
RseI CAYNNNNRTG 3 cut(s) 84, 397, 498
SacI GAGCTC 1 cut(s) 943
SaqAI TTAA 5 cut(s) 96, 153, 170, 632, 750
SatI GCNGC 1 cut(s) 953
Sau3AI GATC 3 cut(s) 389, 462, 869
SchI GAGTC 2 cut(s) 63, 405
ScrFI CCNGG 3 cut(s) 272, 564, 694
SduI GDGCHC 3 cut(s) 290, 562, 943
SfaNI GCATC 2 cut(s) 659, 831
SmiMI CAYNNNNRTG 3 cut(s) 84, 397, 498
SmlI CTYRAG 2 cut(s) 152, 517
SmoI CTYRAG 2 cut(s) 152, 517
SpeI ACTAGT 1 cut(s) 761
SphI GCATGC 1 cut(s) 370
Sse9I AATT 8 cut(s) 172, 212, 236, 262, 629, 847, 885, 1005
SseBI AGGCCT 1 cut(s) 103
SsiI CCGC 4 cut(s) 108, 118, 207, 817
SspMI CTAG 2 cut(s) 762, 873
SstI GAGCTC 1 cut(s) 943
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 3 cut(s) 270, 562, 692
TaaI ACNGT 1 cut(s) 932
TaiI ACGT 2 cut(s) 552, 722
TaqII GACCGA 2 cut(s) 781, 987
TasI AATT 8 cut(s) 172, 212, 236, 262, 629, 847, 885, 1005
TatI WGTACW 1 cut(s) 88
TfiI GAWTC 1 cut(s) 799
Tru1I TTAA 5 cut(s) 96, 153, 170, 632, 750
Tru9I TTAA 5 cut(s) 96, 153, 170, 632, 750
TscAI CASTG 1 cut(s) 954
TseI GCWGC 1 cut(s) 952
TspDTI ATGAA 7 cut(s) 187, 334, 475, 599, 650, 840, 894
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 954
Vha464I CTTAAG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 286
XapI RAATTY 3 cut(s) 172, 236, 1005
XceI RCATGY 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 2 cut(s) 307, 700
XmnI GAANNNNTTC 3 cut(s) 194, 266, 763
XspI CTAG 2 cut(s) 762, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.