Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0017378

Physical Location & Seq

Genomic Coordinates Reverse (-)

12416208 .. 12416984

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGCTTGACGCTCTACTCCAGAGCACGACCGGTGAGGCCGGCTCTTCTGCTGCTCCGGCCGAATCGGTGGGAGCCACGCCCGCCGAAGTCTTCGTGAAGCTGCACGAAGTCTTGTCTCTGACTGCTTCTCAAGCTCTCCGGTGCAAAGGCCTCGACTCTGTTGGAGAGTGTCTCAATGACCTCGCCAGCGGTGGTCATCTGAGCCCGGAGGGTATCTCTTTCCTTACCGACCTCTTGGAGCGAACTCGGCAACACTTTCTTGTCTTCGAGCGAGGTCGTTTTGCTGTCAGTATAATGGACTTACTCTTGCATTTCCCATGTAATTGGGTAGTACTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans Pkinase cNMP_binding

Protein Analysis

115

Amino Acids

12.22

Weight (kDa)

4.85

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017378)

Species	Orthologous Gene IDs
malus_domestica	MD06G1236200.v1.1
pyrus_communis	pycom01g06570 pycom04g11150 pycom12g10420 pycom12g16720 pycom13g18630 pycom13g27900 pycom15g33860 pycom16g12730 pycom17g11410 pycom520g00400 pycom520g00800
rosa_chinensis	RchiOBHm_Chr6g0263221

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 192
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	32
AluBI	AGCT	3 cut(s)	7, 103, 137
AluI	AGCT	3 cut(s)	7, 103, 137
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	123, 179
AoxI	GGCC	3 cut(s)	39, 60, 151
ApeKI	GCWGC	2 cut(s)	53, 103
AsiGI	ACCGGT	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	2 cut(s)	85, 259
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	40, 90
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	123, 179
BisI	GCNGC	2 cut(s)	54, 104
BlsI	GCNGC	2 cut(s)	55, 105
BmcAI	AGTACT	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	209
BpiI	GAAGAC	2 cut(s)	85, 259
BplI	GAGNNNNNCTC	6 cut(s)	29, 61, 159, 191, 203, 235
BpmI	CTGGAG	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	32, 141
Bse118I	RCCGGY	2 cut(s)	32, 41
BseMII	CTCAG	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	40, 90
BsgI	GTGCAG	1 cut(s)	89
Bsh1285I	CGRYCG	2 cut(s)	33, 63
BshFI	GGCC	3 cut(s)	41, 62, 153
BshTI	ACCGGT	1 cut(s)	32
BsiEI	CGRYCG	2 cut(s)	33, 63
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	5 cut(s)	33, 42, 59, 142, 209
BsmAI	GTCTC	2 cut(s)	123, 179
BsnI	GGCC	3 cut(s)	41, 62, 153
Bsp1286I	GDGCHC	2 cut(s)	29, 209
BspACI	CCGC	2 cut(s)	84, 192
BspANI	GGCC	3 cut(s)	41, 62, 153
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	52
BsrFI	RCCGGY	2 cut(s)	32, 41
BssAI	RCCGGY	2 cut(s)	32, 41
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	43, 84, 190
BstDEI	CTNAG	1 cut(s)	203
BstMAI	GTCTC	2 cut(s)	123, 179
BstMCI	CGRYCG	2 cut(s)	33, 63
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 83, 134, 250
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	40, 90
BstV2I	GAAGAC	2 cut(s)	85, 259
BstXI	CCANNNNNNTGG	1 cut(s)	327
BstZI	CGGCCG	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	41, 62, 153
Cac8I	GCNNGC	3 cut(s)	43, 84, 190
Cfr10I	RCCGGY	2 cut(s)	32, 41
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	335
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	9 cut(s)	7, 41, 45, 62, 77, 103, 137, 153, 207
CviKI_1	RGCY	9 cut(s)	7, 41, 45, 62, 77, 103, 137, 153, 207
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	60
EagI	CGGCCG	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	209
Eco52I	CGGCCG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	209
FaeI	CATG	1 cut(s)	324
FaiI	YATR	2 cut(s)	296, 322
FatI	CATG	1 cut(s)	320
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	54, 104
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	54, 104
GluI	GCNGC	2 cut(s)	54, 104
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	41, 62, 153
HapII	CCGG	5 cut(s)	33, 42, 59, 142, 209
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	324
HinfI	GANTC	2 cut(s)	65, 158
HpaII	CCGG	5 cut(s)	33, 42, 59, 142, 209
HphI	GGTGA	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	123, 204
Hpy188III	TCNNGA	2 cut(s)	22, 97
HpyCH4V	TGCA	3 cut(s)	106, 147, 313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 83, 134, 250
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	324
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	4 cut(s)	4, 61, 74, 241
LpnPI	CCDG	7 cut(s)	35, 46, 55, 72, 155, 202, 222
Lsp1109I	GCAGC	2 cut(s)	40, 90
MboII	GAAGA	3 cut(s)	39, 85, 259
MhlI	GDGCHC	2 cut(s)	29, 209
MluCI	AATT	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	6 cut(s)	31, 164, 194, 205, 245, 269
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	5 cut(s)	33, 42, 59, 142, 209
MspR9I	CCNGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	59, 83, 134, 250
NaeI	GCCGGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	209
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	52
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	55, 105
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	2 cut(s)	54, 104
ScaI	AGTACT	1 cut(s)	336
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	29, 209
SetI	ASST	6 cut(s)	9, 105, 139, 186, 237, 280
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	1 cut(s)	325
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	2 cut(s)	84, 192
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	207
TaqI	TCGA	2 cut(s)	156, 270
TasI	AATT	1 cut(s)	325
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TseI	GCWGC	2 cut(s)	53, 103
ZrmI	AGTACT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.