MD07G1011000.v1.1

protein phosphatase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015075
Physical Location & Seq
Reverse (-)
992774 .. 993373
600 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1011000.v1.1.491

Sequence Viewer

Length: 600 bp
ATGGTGGCAATGACGACGGCCAACACGACCGAGGAACCAATTTTGTTCAGGATGGACAGACTCGATACAATTCTGAGGCAGTTGGAGGAAATCCGACGCTCGCAGTCGCATTCACGTTCACATACTCATACGCCAAAGAGTAGCTCGCTTACGTCCACACCCTCGAGGACGAGCGGGACCCTCACGAGCGAGGGAGGGAAATTACCCTCATCCGCGGAGTTGATCTCTCCCGAGAGCCTAGAGAAGCACTGCCGTCCGATTGAGCACGTGATGATGGAGACCGACGCCAAGGGGTCGCTGATCGAGCGGCTGGATCACGTTGAGGACCGCGTGCTGAAGCTGTGCGTGCAGCTGGAGGAGGAGTTTATGGAGAGTAGTGCCGAAAAGAAGAGAGGTGACGAGGCGGAGATGATCAAGAGGAGTGAGAAAGAGAGAGAGGAGATGATCAGGAGGAGTGAGAAAGAGGAGAAGATTGATATCAGTGAGGTTGAGAGGACTCAAATTGATGTGATTAAGAAAAAGAAGAAGAAGGGACTGAAGCAACTTATTAAGCAGTCTGTTATGGGAAAAGGAAAACCCAATAAATCAACTAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.76

Weight (kDa)

8.45

Isoelectric Point (pI)

65.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07985
fragaria_vesca FvH4_7g01080
malus_domestica MD07G1011000.v1.1
prunus_persica Prupe.2G013500_v2.0.a1
pyrus_communis pycom07g00910
rosa_chinensis RchiOBHm_Chr1g0316061
rosa_laevigata RLG00000030705
rosa_multiflora Rmu_sc0002014.1_g000005 Rmu_sc0002531.1_g000037
rosa_roxburghii Rroxscaffold_4G00331160
rosa_rugosa Rorug01G0008600
rosa_samantha Rh1AG018900 Rh1BG012400 Rh1CG016200 Rh1DG012600
rosa_wichuraiana Rw1G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 163
AccBSI CCGCTC 2 cut(s) 174, 307
AccII CGCG 2 cut(s) 215, 330
AciI CCGC 6 cut(s) 174, 213, 215, 307, 328, 404
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 2 cut(s) 356, 557
AcvI CACGTG 1 cut(s) 268
AcyI GRCGYC 1 cut(s) 285
AluBI AGCT 3 cut(s) 144, 340, 352
AluI AGCT 3 cut(s) 144, 340, 352
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 321
Ama87I CYCGRG 2 cut(s) 163, 230
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 177, 325
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 2 cut(s) 163, 230
AvaII GGWCC 2 cut(s) 177, 325
BauI CACGAG 1 cut(s) 184
BbrPI CACGTG 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 361
BccI CCATC 2 cut(s) 46, 268
BceAI ACGGC 2 cut(s) 33, 237
BclI TGATCA 2 cut(s) 411, 444
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 239
BisI GCNGC 2 cut(s) 308, 350
BlsI GCNGC 2 cut(s) 309, 351
Bme18I GGWCC 2 cut(s) 177, 325
BmeT110I CYCGRG 2 cut(s) 163, 230
BmgT120I GGNCC 2 cut(s) 177, 325
BmiI GGNNCC 3 cut(s) 36, 178, 179
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 374
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 30, 213, 288
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse3DI GCAATG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 30, 213, 288
BseGI GGATG 2 cut(s) 57, 209
BseJI GATNNNNATC 1 cut(s) 476
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 6 cut(s) 371, 374, 433, 452, 466, 479
BseXI GCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 368
Bsh1236I CGCG 2 cut(s) 215, 330
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 2 cut(s) 163, 230
BslFI GGGAC 2 cut(s) 190, 546
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 2 cut(s) 190, 546
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 2 cut(s) 163, 230
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 222, 300, 313, 411, 444
BspACI CCGC 6 cut(s) 174, 213, 215, 307, 328, 404
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 2 cut(s) 215, 330
BspLI GGNNCC 3 cut(s) 36, 178, 179
BspPI GGATC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 2 cut(s) 174, 307
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 3 cut(s) 30, 213, 288
BssMI GATC 5 cut(s) 222, 300, 313, 411, 444
BssNI GRCGYC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 285
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 4 cut(s) 101, 146, 332, 347
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 57, 209
BstFNI CGCG 2 cut(s) 215, 330
BstKTI GATC 5 cut(s) 225, 303, 316, 414, 447
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 5 cut(s) 222, 300, 313, 411, 444
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 304, 346
BstUI CGCG 2 cut(s) 215, 330
BstV1I GCAGC 1 cut(s) 361
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 57, 209
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 247, 487
Cac8I GCNNGC 4 cut(s) 101, 146, 332, 347
Cfr13I GGNCC 2 cut(s) 177, 325
Cfr42I CCGCGG 1 cut(s) 216
CseI GACGC 2 cut(s) 105, 293
CviJI RGCY 6 cut(s) 20, 144, 237, 310, 340, 352
CviKI_1 RGCY 6 cut(s) 20, 144, 237, 310, 340, 352
DdeI CTNAG 1 cut(s) 74
DpnI GATC 5 cut(s) 224, 302, 315, 413, 446
DpnII GATC 5 cut(s) 222, 300, 313, 411, 444
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
EciI GGCGGA 1 cut(s) 419
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 2 cut(s) 177, 325
Eco57I CTGAAG 2 cut(s) 356, 557
Eco72I CACGTG 1 cut(s) 268
Eco88I CYCGRG 2 cut(s) 163, 230
EcoO109I RGGNCCY 1 cut(s) 177
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaiI YATR 4 cut(s) 123, 129, 368, 563
FaqI GGGAC 2 cut(s) 190, 546
FauI CCCGC 1 cut(s) 167
FbaI TGATCA 2 cut(s) 411, 444
Fnu4HI GCNGC 2 cut(s) 308, 350
FokI GGATG 2 cut(s) 64, 196
Fsp4HI GCNGC 2 cut(s) 308, 350
FspBI CTAG 1 cut(s) 239
GluI GCNGC 2 cut(s) 308, 350
GsuI CTGGAG 1 cut(s) 374
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 2 cut(s) 105, 293
Hin1I GRCGYC 1 cut(s) 285
HinfI GANTC 2 cut(s) 60, 496
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 119, 156
Hpy188I TCNGA 3 cut(s) 75, 95, 258
Hpy188III TCNNGA 5 cut(s) 49, 184, 230, 415, 448
Hpy8I GTNNAC 2 cut(s) 119, 156
Hpy99I CGWCG 3 cut(s) 19, 99, 287
HpyAV CCTTC 1 cut(s) 523
HpyCH4IV ACGT 4 cut(s) 115, 152, 267, 318
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 346
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 4 cut(s) 115, 152, 267, 318
Hsp92I GRCGYC 1 cut(s) 285
KflI GGGWCCC 1 cut(s) 177
Ksp22I TGATCA 2 cut(s) 411, 444
KspI CCGCGG 1 cut(s) 216
Kzo9I GATC 5 cut(s) 222, 300, 313, 411, 444
LpnPI CCDG 4 cut(s) 34, 296, 338, 433
Lsp1109I GCAGC 1 cut(s) 361
MaeI CTAG 1 cut(s) 239
MaeII ACGT 4 cut(s) 115, 152, 267, 318
MaeIII GTNAC 1 cut(s) 395
MalI GATC 5 cut(s) 224, 302, 315, 413, 446
MbiI CCGCTC 2 cut(s) 174, 307
MboI GATC 5 cut(s) 222, 300, 313, 411, 444
MboII GAAGA 4 cut(s) 400, 481, 535, 538
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 4 cut(s) 39, 69, 200, 501
MlyI GAGTC 2 cut(s) 54, 490
MmeI TCCRAC 2 cut(s) 63, 118
MseI TTAA 2 cut(s) 513, 549
MspA1I CMGCKG 2 cut(s) 215, 352
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 2 cut(s) 215, 330
MwoI GCNNNNNNNGC 2 cut(s) 304, 346
NdeII GATC 5 cut(s) 222, 300, 313, 411, 444
NlaIV GGNNCC 3 cut(s) 36, 178, 179
NmuCI GTSAC 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PctI GAATGC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 309, 351
PleI GAGTC 2 cut(s) 54, 490
PmaCI CACGTG 1 cut(s) 268
PmlI CACGTG 1 cut(s) 268
PpsI GAGTC 2 cut(s) 54, 490
Ppu21I YACGTR 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 177
PspCI CACGTG 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 36, 178, 179
PspPI GGNCC 2 cut(s) 177, 325
PspPPI RGGWCCY 1 cut(s) 177
PspXI VCTCGAGB 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 352
SacII CCGCGG 1 cut(s) 216
SaqAI TTAA 2 cut(s) 513, 549
SatI GCNGC 2 cut(s) 308, 350
Sau3AI GATC 5 cut(s) 222, 300, 313, 411, 444
Sau96I GGNCC 2 cut(s) 177, 325
SchI GAGTC 2 cut(s) 54, 490
SduI GDGCHC 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 163
Sfr303I CCGCGG 1 cut(s) 216
SgrBI CCGCGG 1 cut(s) 216
SinI GGWCC 2 cut(s) 177, 325
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 4 cut(s) 39, 69, 200, 501
SsiI CCGC 6 cut(s) 174, 213, 215, 307, 328, 404
SspMI CTAG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 4 cut(s) 118, 155, 270, 321
TaqI TCGA 3 cut(s) 63, 164, 303
TaqII GACCGA 2 cut(s) 44, 296
TasI AATT 4 cut(s) 39, 69, 200, 501
TauI GCSGC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 513, 549
Tru9I TTAA 2 cut(s) 513, 549
TscAI CASTG 2 cut(s) 254, 487
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 395
TspRI CASTG 2 cut(s) 254, 487
VpaK11BI GGWCC 2 cut(s) 177, 325
XhoI CTCGAG 1 cut(s) 163
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.