Rorug01G0008600

protein phosphatase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015075
Physical Location & Seq
Reverse (-)
1645519 .. 1647135
1617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0008600.1

Sequence Viewer

Length: 1068 bp
ATGTCTAACCCCAGGAAGGCATTTGGATGGGCTGCAAGAGATTCATCTGGTGTTCTCTCTCCCTTCAGTTTCTCCAGAAGGGAATCCGGAGAGAGAGACGTGACATTCAAAGTGTTGTACTGTGGGATTTGCCATTCGGACCTTCACATGGTCAAGAATGAATGGGGCTTATCTACCTATCCTCTGGTTCCCGGGCATGAGATTGTCGGTGAAGTGACGGAAGTAGGGAGCAATGTACAAAAATTCAAAATTGGAGACAAAGTCGGTGTTGGAGGCATAGTGGGAGCTTGCCGATCTTGTGATAGTTGTACCGACCATCTTGAGAACTACTGCCCCAAACTAATACTCACGTACAGTGCCAAGTACTATGACGGAAACACCACCTATGGCGGTTACTCTGACATTATGGTTGCAGATGAACACTTCGTAGTCCGTATCCCGGACAACCTACCCCTTGATTGTGCTGCTCCTCTCCTATGTGCCGGAATCACAACCTACAGCCCGTTGAGATATTTTGGACTTGACAAGCCTGGCATGCATGTGGGCGTGGTTGGCCTAGGTGGTTTAGGCCACGTCGCAGTGAAGTTTGCCAAGGCAATGGGAGTGAAGGTTACAGTGATCAGTACGTCCCCTAATAAGAAGGAGGAAGCAATTAAACACCTAGGAGCTGATTCGTTTTTGGTTAGTCGTGACCAAGATCAAATGCAGGCTGCCATTGGTACCATGGATGGGATCATTGACACAGTTTCTGCACAACATCCTCTCTTGCCTTTGATTGGTTTGTTGAAGTCTCATGGAAAGCTTGTTATGGTTGGTGCACCAGAAAAGCCTCTTGAGCTTCCGGTTTTTCCTTTACTCATGGGAAGGAAGACGGTAGCTAGTAGCGGCGGTGGAGGTATGAAGGAGACACAAGAGATGATCGATTTTGCAGCCAACCACAACATAACAGCAGACATCGAGGTTATCCCAATTGACTACTTGAACACTGCCATGGAGCGCCTTGCCAAAGCAGACGTCAGATACCGTTTTGTTATTGACATTGGAAACACACTGAAGGCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

38.25

Weight (kDa)

6.41

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 31 - 148 6.2e-27 Alcohol dehydrogenase GroES-like domain
AlaDh_PNT_C PF01262 180 - 250 4.9e-06 Alanine dehydrogenase/PNT, C-terminal domain
ADH_zinc_N PF00107 188 - 311 6.2e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07985
fragaria_vesca FvH4_7g01080
malus_domestica MD07G1011000.v1.1
prunus_persica Prupe.2G013500_v2.0.a1
pyrus_communis pycom07g00910
rosa_chinensis RchiOBHm_Chr1g0316061
rosa_laevigata RLG00000030705
rosa_multiflora Rmu_sc0002014.1_g000005 Rmu_sc0002531.1_g000037
rosa_roxburghii Rroxscaffold_4G00331160
rosa_rugosa Rorug01G0008600
rosa_samantha Rh1AG018900 Rh1BG012400 Rh1CG016200 Rh1DG012600
rosa_wichuraiana Rw1G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1017
Acc65I GGTACC 1 cut(s) 719
AccB1I GGYRCC 1 cut(s) 719
AccIII TCCGGA 1 cut(s) 86
AciI CCGC 3 cut(s) 390, 885, 888
AclWI GGATC 1 cut(s) 740
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 1014
AfaI GTAC 7 cut(s) 119, 237, 310, 353, 365, 625, 721
AfiI CCNNNNNNNGG 5 cut(s) 16, 148, 439, 729, 776
AgsI TTSAA 4 cut(s) 109, 247, 787, 982
AjiI CACGTC 2 cut(s) 100, 574
AjnI CCWGG 2 cut(s) 11, 529
AluBI AGCT 6 cut(s) 287, 668, 802, 838, 878, 1062
AluI AGCT 6 cut(s) 287, 668, 802, 838, 878, 1062
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 4 cut(s) 90, 249, 795, 899
Alw44I GTGCAC 1 cut(s) 816
AlwI GGATC 1 cut(s) 740
AlwNI CAGNNNCTG 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 86
AoxI GGCC 2 cut(s) 553, 568
ApaLI GTGCAC 1 cut(s) 816
ApeKI GCWGC 4 cut(s) 32, 464, 710, 929
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 999, 1031
Asp718I GGTACC 1 cut(s) 719
AspA2I CCTAGG 2 cut(s) 556, 661
AspLEI GCGC 1 cut(s) 999
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 3 cut(s) 192, 193, 440
AsuHPI GGTGA 1 cut(s) 221
AsuNHI GCTAGC 1 cut(s) 1058
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 139
AvrII CCTAGG 2 cut(s) 556, 661
BaeGI GKGCMC 1 cut(s) 820
BanI GGYRCC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 875
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 4 cut(s) 19, 451, 697, 941
BccI CCATC 3 cut(s) 21, 324, 722
BciT130I CCWGG 2 cut(s) 13, 531
BciVI GTATCC 1 cut(s) 446
BclI TGATCA 1 cut(s) 618
BcnI CCSGG 3 cut(s) 192, 193, 440
BcoDI GTCTC 4 cut(s) 90, 249, 795, 899
BfaI CTAG 4 cut(s) 557, 662, 879, 1059
BfmI CTRYAG 1 cut(s) 496
BfoI RGCGCY 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 5 cut(s) 33, 465, 711, 886, 930
BlnI CCTAGG 2 cut(s) 556, 661
BlsI GCNGC 5 cut(s) 34, 466, 712, 887, 931
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 5 cut(s) 13, 192, 193, 440, 531
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 191
BmgBI CACGTC 2 cut(s) 100, 574
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 189, 721
BmrFI CCNGG 5 cut(s) 13, 192, 193, 440, 531
BmtI GCTAGC 1 cut(s) 1062
BpiI GAAGAC 1 cut(s) 875
BpmI CTGGAG 1 cut(s) 58
BpuEI CTTGAG 2 cut(s) 341, 854
BpuMI CCSGG 3 cut(s) 192, 193, 440
Bsa29I ATCGAT 1 cut(s) 921
BsaAI YACGTR 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 1014
BsaJI CCNNGG 7 cut(s) 11, 191, 556, 591, 661, 723, 990
BsaWI WCCGGW 2 cut(s) 86, 841
BsaXI ACNNNNNCTCC 6 cut(s) 246, 264, 276, 294, 594, 624
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 148, 439, 729, 776
Bse3DI GCAATG 2 cut(s) 238, 603
BseAI TCCGGA 1 cut(s) 86
BseBI CCWGG 2 cut(s) 13, 531
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 7 cut(s) 11, 191, 556, 591, 661, 723, 990
BseGI GGATG 3 cut(s) 32, 733, 757
BseLI CCNNNNNNNGG 5 cut(s) 16, 148, 439, 729, 776
BseMI GCAATG 2 cut(s) 238, 603
BseRI GAGGAG 1 cut(s) 459
BseSI GKGCMC 1 cut(s) 820
BseXI GCAGC 4 cut(s) 19, 451, 697, 941
BsgI GTGCAG 1 cut(s) 735
BshFI GGCC 2 cut(s) 555, 570
BshNI GGYRCC 1 cut(s) 719
BshVI ATCGAT 1 cut(s) 921
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 5 cut(s) 87, 192, 440, 483, 842
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 5 cut(s) 16, 148, 439, 729, 776
BsmAI GTCTC 4 cut(s) 90, 249, 795, 899
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 613
BsnI GGCC 2 cut(s) 555, 570
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 820
Bsp13I TCCGGA 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 235
Bsp143I GATC 5 cut(s) 293, 618, 697, 732, 918
Bsp19I CCATGG 2 cut(s) 723, 990
BspACI CCGC 3 cut(s) 390, 885, 888
BspANI GGCC 2 cut(s) 555, 570
BspDI ATCGAT 1 cut(s) 921
BspEI TCCGGA 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 189, 721
BspOI GCTAGC 1 cut(s) 1062
BspPI GGATC 1 cut(s) 740
BspT107I GGYRCC 1 cut(s) 719
BsrDI GCAATG 2 cut(s) 238, 603
BsrGI TGTACA 1 cut(s) 235
BssECI CCNNGG 7 cut(s) 11, 191, 556, 591, 661, 723, 990
BssMI GATC 5 cut(s) 293, 618, 697, 732, 918
BssNI GRCGYC 1 cut(s) 1014
BssT1I CCWWGG 5 cut(s) 556, 591, 661, 723, 990
Bst2UI CCWGG 2 cut(s) 13, 531
Bst4CI ACNGT 6 cut(s) 122, 356, 616, 745, 874, 1025
BstACI GRCGYC 1 cut(s) 1014
BstAUI TGTACA 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 4 cut(s) 289, 536, 708, 1060
BstDSI CCRYGG 2 cut(s) 723, 990
BstF5I GGATG 3 cut(s) 32, 733, 757
BstH2I RGCGCY 1 cut(s) 1000
BstHHI GCGC 1 cut(s) 999
BstKTI GATC 5 cut(s) 296, 621, 700, 735, 921
BstMAI GTCTC 4 cut(s) 90, 249, 795, 899
BstMBI GATC 5 cut(s) 293, 618, 697, 732, 918
BstMWI GCNNNNNNNGC 3 cut(s) 535, 552, 835
BstNI CCWGG 2 cut(s) 13, 531
BstNSI RCATGY 2 cut(s) 538, 542
BstSCI CCNGG 5 cut(s) 11, 190, 191, 438, 529
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 820
BstV1I GCAGC 4 cut(s) 19, 451, 697, 941
BstV2I GAAGAC 1 cut(s) 875
BstXI CCANNNNNNTGG 1 cut(s) 598
Bsu15I ATCGAT 1 cut(s) 921
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 2 cut(s) 555, 570
BsuTUI ATCGAT 1 cut(s) 921
BtgI CCRYGG 2 cut(s) 723, 990
BtrI CACGTC 2 cut(s) 100, 574
BtsCI GGATG 3 cut(s) 32, 733, 757
BtsI GCAGTG 2 cut(s) 585, 984
BtsIMutI CAGTG 5 cut(s) 361, 585, 621, 984, 1049
Cac8I GCNNGC 4 cut(s) 289, 536, 708, 1060
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 1 cut(s) 999
Cfr13I GGNCC 1 cut(s) 139
Cfr9I CCCGGG 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 921
Csp6I GTAC 7 cut(s) 118, 236, 309, 352, 364, 624, 720
CviAII CATG 8 cut(s) 148, 197, 535, 539, 724, 794, 859, 991
CviQI GTAC 7 cut(s) 118, 236, 309, 352, 364, 624, 720
DpnI GATC 5 cut(s) 295, 620, 699, 734, 920
DpnII GATC 5 cut(s) 293, 618, 697, 732, 918
Eco130I CCWWGG 5 cut(s) 556, 591, 661, 723, 990
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 11, 529
EcoT14I CCWWGG 5 cut(s) 556, 591, 661, 723, 990
EcoT22I ATGCAT 1 cut(s) 540
ErhI CCWWGG 5 cut(s) 556, 591, 661, 723, 990
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 8 cut(s) 151, 200, 538, 542, 727, 797, 862, 994
FaqI GGGAC 1 cut(s) 613
FatI CATG 8 cut(s) 147, 196, 534, 538, 723, 793, 858, 990
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 5 cut(s) 33, 465, 711, 886, 930
FokI GGATG 3 cut(s) 39, 740, 744
Fsp4HI GCNGC 5 cut(s) 33, 465, 711, 886, 930
FspBI CTAG 4 cut(s) 557, 662, 879, 1059
GlaI GCGC 1 cut(s) 998
GluI GCNGC 5 cut(s) 33, 465, 711, 886, 930
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 1 cut(s) 1000
HaeIII GGCC 2 cut(s) 555, 570
HapII CCGG 5 cut(s) 87, 192, 440, 483, 842
HhaI GCGC 1 cut(s) 999
Hin1I GRCGYC 1 cut(s) 1014
Hin1II CATG 8 cut(s) 151, 200, 538, 542, 727, 797, 862, 994
Hin6I GCGC 1 cut(s) 997
HinP1I GCGC 1 cut(s) 997
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 4 cut(s) 41, 83, 486, 671
HpaII CCGG 5 cut(s) 87, 192, 440, 483, 842
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 818
Hpy188I TCNGA 3 cut(s) 139, 400, 1019
Hpy188III TCNNGA 6 cut(s) 75, 87, 154, 320, 689, 833
Hpy8I GTNNAC 1 cut(s) 818
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 9 cut(s) 10, 72, 73, 152, 601, 634, 858, 895, 1048
HpyCH4III ACNGT 6 cut(s) 122, 356, 616, 745, 874, 1025
HpyCH4IV ACGT 5 cut(s) 99, 350, 573, 626, 1014
HpyCH4V TGCA 7 cut(s) 35, 413, 538, 706, 752, 818, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 535, 552, 835
HpySE526I ACGT 5 cut(s) 99, 350, 573, 626, 1014
Hsp92I GRCGYC 1 cut(s) 1014
Hsp92II CATG 8 cut(s) 151, 200, 538, 542, 727, 797, 862, 994
HspAI GCGC 1 cut(s) 997
Kpn2I TCCGGA 1 cut(s) 86
KpnI GGTACC 1 cut(s) 723
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 5 cut(s) 293, 618, 697, 732, 918
LmnI GCTCC 5 cut(s) 228, 284, 472, 665, 994
Lsp1109I GCAGC 4 cut(s) 19, 451, 697, 941
MaeI CTAG 4 cut(s) 557, 662, 879, 1059
MaeII ACGT 5 cut(s) 99, 350, 573, 626, 1014
MaeIII GTNAC 5 cut(s) 100, 214, 392, 610, 689
MalI GATC 5 cut(s) 295, 620, 699, 734, 920
MboI GATC 5 cut(s) 293, 618, 697, 732, 918
MboII GAAGA 1 cut(s) 880
MfeI CAATTG 1 cut(s) 969
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 4 cut(s) 242, 249, 651, 969
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 8 cut(s) 192, 266, 480, 637, 771, 840, 887, 952
Mph1103I ATGCAT 1 cut(s) 540
MroI TCCGGA 1 cut(s) 86
MseI TTAA 2 cut(s) 654, 1066
MslI CAYNNNNRTG 3 cut(s) 25, 539, 989
MspI CCGG 5 cut(s) 87, 192, 440, 483, 842
MspR9I CCNGG 5 cut(s) 13, 192, 193, 440, 531
MunI CAATTG 1 cut(s) 969
MvaI CCWGG 2 cut(s) 13, 531
MwoI GCNNNNNNNGC 3 cut(s) 535, 552, 835
NciI CCSGG 3 cut(s) 192, 193, 440
NcoI CCATGG 2 cut(s) 723, 990
NdeII GATC 5 cut(s) 293, 618, 697, 732, 918
NheI GCTAGC 1 cut(s) 1058
NlaIII CATG 8 cut(s) 151, 200, 538, 542, 727, 797, 862, 994
NlaIV GGNNCC 2 cut(s) 189, 721
NmuCI GTSAC 3 cut(s) 100, 214, 689
NsiI ATGCAT 1 cut(s) 540
NspI RCATGY 2 cut(s) 538, 542
PaeI GCATGC 1 cut(s) 538
PfeI GAWTC 4 cut(s) 41, 83, 486, 671
PflFI GACNNNGTC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 5 cut(s) 34, 466, 712, 887, 931
Ppu21I YACGTR 1 cut(s) 351
Psp6I CCWGG 2 cut(s) 11, 529
PspGI CCWGG 2 cut(s) 11, 529
PspN4I GGNNCC 2 cut(s) 189, 721
PspPI GGNCC 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 749
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 7 cut(s) 119, 237, 310, 353, 365, 625, 721
RsaNI GTAC 7 cut(s) 118, 236, 309, 352, 364, 624, 720
RseI CAYNNNNRTG 3 cut(s) 25, 539, 989
SaqAI TTAA 2 cut(s) 654, 1066
SatI GCNGC 5 cut(s) 33, 465, 711, 886, 930
Sau3AI GATC 5 cut(s) 293, 618, 697, 732, 918
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 365
ScrFI CCNGG 5 cut(s) 13, 192, 193, 440, 531
SduI GDGCHC 1 cut(s) 820
SfcI CTRYAG 1 cut(s) 496
SinI GGWCC 1 cut(s) 139
SmaI CCCGGG 1 cut(s) 193
SmiMI CAYNNNNRTG 3 cut(s) 25, 539, 989
SmlI CTYRAG 2 cut(s) 320, 833
SmoI CTYRAG 2 cut(s) 320, 833
SphI GCATGC 1 cut(s) 538
Sse9I AATT 4 cut(s) 242, 249, 651, 969
SsiI CCGC 3 cut(s) 390, 885, 888
SspMI CTAG 4 cut(s) 557, 662, 879, 1059
StyD4I CCNGG 5 cut(s) 11, 190, 191, 438, 529
StyI CCWWGG 5 cut(s) 556, 591, 661, 723, 990
TaaI ACNGT 6 cut(s) 122, 356, 616, 745, 874, 1025
TaiI ACGT 5 cut(s) 102, 353, 576, 629, 1017
TaqI TCGA 2 cut(s) 921, 957
TasI AATT 4 cut(s) 242, 249, 651, 969
TatI WGTACW 3 cut(s) 117, 235, 363
TauI GCSGC 1 cut(s) 888
TfiI GAWTC 4 cut(s) 41, 83, 486, 671
Tru1I TTAA 2 cut(s) 654, 1066
Tru9I TTAA 2 cut(s) 654, 1066
TscAI CASTG 5 cut(s) 361, 585, 621, 991, 1056
TseFI GTSAC 3 cut(s) 100, 214, 689
TseI GCWGC 4 cut(s) 32, 464, 710, 929
Tsp45I GTSAC 3 cut(s) 100, 214, 689
TspDTI ATGAA 4 cut(s) 33, 174, 432, 914
TspGWI ACGGA 3 cut(s) 233, 387, 422
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 5 cut(s) 361, 585, 621, 991, 1056
Tth111I GACNNNGTC 1 cut(s) 260
VneI GTGCAC 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 242
XceI RCATGY 2 cut(s) 538, 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmaI CCCGGG 1 cut(s) 191
XmaJI CCTAGG 2 cut(s) 556, 661
XspI CTAG 4 cut(s) 557, 662, 879, 1059
ZraI GACGTC 1 cut(s) 1015
ZrmI AGTACT 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.