Rroxscaffold_4G00331160

protein phosphatase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015075
Physical Location & Seq
Forward (+)
64980264 .. 64980776
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331160.1

Sequence Viewer

Length: 513 bp
ATGGTGGCAGTAACAATGACAACAGCTACAGCCAATACGGAGGAGCCGATTCTGTCGAGGCTCGACCGCCTGGACATTATGCTTCGGCAGCTGGAGGAAATCAAGGGGTGCAATCCCATCCATCAATCCTCACACTCAGCCAAGAGCTCTTGCGAATCCACGCCGTCCAGTGGAGCCCTAACTAGTGATTACGCACAGGTGTCGTCGACGTCCTCCGCCGACTACTTCTCTCCCAAGAGCCTGGAGAAGCACTGCCGTCCGATTCAGAACGTGATGATGGAGACGGACGCCAAGGGGACGCTGATCGAGAGGCTCGATCATGTAGAGGATCGCGTTCTGAAGCTGTGTATGCAGTTGGAGGAAGAACTGGAGGCCGCTGAGAGGAAGAGAGAGGATAGAGATCAGGTCAAGGTTGAGACAGAGGTGAAGGTCGTCGAGGAGAAGAGGACTCCTCACAAGAAGAAGGGGTTCAAGCAACTTGTAAAACAGTGTGTTACAGGGAAAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

6.23

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07985
fragaria_vesca FvH4_7g01080
malus_domestica MD07G1011000.v1.1
prunus_persica Prupe.2G013500_v2.0.a1
pyrus_communis pycom07g00910
rosa_chinensis RchiOBHm_Chr1g0316061
rosa_laevigata RLG00000030705
rosa_multiflora Rmu_sc0002014.1_g000005 Rmu_sc0002531.1_g000037
rosa_roxburghii Rroxscaffold_4G00331160
rosa_rugosa Rorug01G0008600
rosa_samantha Rh1AG018900 Rh1BG012400 Rh1CG016200 Rh1DG012600
rosa_wichuraiana Rw1G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 206
AccII CGCG 1 cut(s) 333
AciI CCGC 3 cut(s) 67, 216, 375
AclWI GGATC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 359
AcyI GRCGYC 2 cut(s) 209, 288
AfiI CCNNNNNNNGG 2 cut(s) 170, 381
AgsI TTSAA 1 cut(s) 472
AhlI ACTAGT 1 cut(s) 182
AjnI CCWGG 2 cut(s) 69, 240
AluBI AGCT 4 cut(s) 26, 91, 147, 343
AluI AGCT 4 cut(s) 26, 91, 147, 343
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 275, 410
AlwI GGATC 1 cut(s) 336
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 436
BanII GRGCYC 2 cut(s) 149, 178
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 100
BccI CCATC 3 cut(s) 125, 129, 271
BceAI ACGGC 2 cut(s) 148, 240
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 2 cut(s) 71, 242
BcoDI GTCTC 2 cut(s) 275, 410
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 89, 375
BlsI GCNGC 2 cut(s) 90, 376
Bme1390I CCNGG 2 cut(s) 71, 242
BmiI GGNNCC 2 cut(s) 45, 175
BmrFI CCNGG 2 cut(s) 71, 242
BplI GAGNNNNNCTC 2 cut(s) 436, 468
BpmI CTGGAG 3 cut(s) 113, 263, 389
BsaBI GATNNNNATC 1 cut(s) 399
BsaHI GRCGYC 2 cut(s) 209, 288
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 381
Bse1I ACTGG 2 cut(s) 168, 372
Bse8I GATNNNNATC 1 cut(s) 399
BseBI CCWGG 2 cut(s) 71, 242
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 2 cut(s) 170, 381
BseMII CTCAG 2 cut(s) 150, 369
BseNI ACTGG 2 cut(s) 168, 372
BseRI GAGGAG 3 cut(s) 56, 441, 452
BseXI GCAGC 1 cut(s) 100
Bsh1236I CGCG 1 cut(s) 333
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 170, 381
BsmAI GTCTC 2 cut(s) 275, 410
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 149, 178
Bsp143I GATC 4 cut(s) 303, 316, 328, 400
BspACI CCGC 3 cut(s) 67, 216, 375
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 2 cut(s) 149, 370
BspFNI CGCG 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 45, 175
BspPI GGATC 1 cut(s) 336
BsrI ACTGG 2 cut(s) 168, 372
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 4 cut(s) 303, 316, 328, 400
BssNI GRCGYC 2 cut(s) 209, 288
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 71, 242
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 2 cut(s) 380, 437
BstACI GRCGYC 2 cut(s) 209, 288
BstDEI CTNAG 2 cut(s) 136, 378
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 333
BstKTI GATC 4 cut(s) 306, 319, 331, 403
BstMAI GTCTC 2 cut(s) 275, 410
BstMBI GATC 4 cut(s) 303, 316, 328, 400
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 88, 349
BstNI CCWGG 2 cut(s) 71, 242
BstSCI CCNGG 2 cut(s) 69, 240
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 3 cut(s) 175, 250, 494
CseI GACGC 2 cut(s) 296, 307
CviAII CATG 1 cut(s) 320
DdeI CTNAG 2 cut(s) 136, 378
DpnI GATC 4 cut(s) 305, 318, 330, 402
DpnII GATC 4 cut(s) 303, 316, 328, 400
Eam1104I CTCTTC 2 cut(s) 380, 437
EarI CTCTTC 2 cut(s) 380, 437
EciI GGCGGA 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 291
Eco24I GRGCYC 2 cut(s) 149, 178
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 69, 240
EcoT14I CCWWGG 1 cut(s) 291
EcoT38I GRGCYC 2 cut(s) 149, 178
ErhI CCWWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 1 cut(s) 323
FaiI YATR 3 cut(s) 80, 321, 350
FaqI GGGAC 1 cut(s) 310
FatI CATG 1 cut(s) 319
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 89, 375
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 2 cut(s) 149, 178
Fsp4HI GCNGC 2 cut(s) 89, 375
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 89, 375
GsuI CTGGAG 3 cut(s) 113, 263, 389
HaeIII GGCC 1 cut(s) 374
HgaI GACGC 2 cut(s) 296, 307
Hin1I GRCGYC 2 cut(s) 209, 288
Hin1II CATG 1 cut(s) 323
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 4 cut(s) 49, 155, 262, 448
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 3 cut(s) 261, 267, 339
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 3 cut(s) 208, 211, 437
HpyAV CCTTC 2 cut(s) 421, 457
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 2 cut(s) 209, 270
HpyCH4V TGCA 2 cut(s) 111, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 349
HpyF3I CTNAG 2 cut(s) 136, 378
HpySE526I ACGT 2 cut(s) 209, 270
Hsp92I GRCGYC 2 cut(s) 209, 288
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 4 cut(s) 303, 316, 328, 400
LmnI GCTCC 2 cut(s) 43, 173
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 209, 270
MaeIII GTNAC 2 cut(s) 10, 493
MalI GATC 4 cut(s) 305, 318, 330, 402
MboI GATC 4 cut(s) 303, 316, 328, 400
MboII GAAGA 4 cut(s) 374, 397, 454, 472
MhlI GDGCHC 2 cut(s) 149, 178
MluCI AATT 1 cut(s) 508
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 1 cut(s) 511
MspA1I CMGCKG 2 cut(s) 91, 377
MspR9I CCNGG 2 cut(s) 71, 242
MvaI CCWGG 2 cut(s) 71, 242
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 88, 349
NdeII GATC 4 cut(s) 303, 316, 328, 400
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 2 cut(s) 45, 175
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 312
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 3 cut(s) 49, 155, 262
PkrI GCNGC 2 cut(s) 90, 376
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 69, 240
PspGI CCWGG 2 cut(s) 69, 240
PspN4I GGNNCC 2 cut(s) 45, 175
PvuII CAGCTG 1 cut(s) 91
SacI GAGCTC 1 cut(s) 149
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 511
SatI GCNGC 2 cut(s) 89, 375
Sau3AI GATC 4 cut(s) 303, 316, 328, 400
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 2 cut(s) 71, 242
SduI GDGCHC 2 cut(s) 149, 178
SfcI CTRYAG 1 cut(s) 27
SgrDI CGTCGACG 1 cut(s) 205
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 1 cut(s) 508
SsiI CCGC 3 cut(s) 67, 216, 375
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 69, 240
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 2 cut(s) 212, 273
TaqI TCGA 6 cut(s) 56, 63, 206, 306, 315, 435
TasI AATT 1 cut(s) 508
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 3 cut(s) 49, 155, 262
Tru1I TTAA 1 cut(s) 511
Tru9I TTAA 1 cut(s) 511
TscAI CASTG 3 cut(s) 175, 257, 494
TseI GCWGC 1 cut(s) 88
TspGWI ACGGA 2 cut(s) 53, 299
TspRI CASTG 3 cut(s) 175, 257, 494
XmiI GTMKAC 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 1 cut(s) 183
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.