Prupe.2G013500_v2.0.a1

protein phosphatase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015075
Physical Location & Seq
Reverse (-)
1194557 .. 1195030
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G013500.1

Sequence Viewer

Length: 474 bp
ATGGACCGCCTTGACAACATGCTAAGGCAATTGGAGGAAATCAGAGGGTGCAATAATAGTAATAATACGAGGTCATCACATTCGCCCAAGAGCAGTTCCTTCGCATCCACACCGTCGAGGACGAGCGACGGAGTGGGGCACGTGTCGTCATCTGCGGAGCTGATATCTCCGGAGAGCCTAGAGAAGCACTGCCGTCCGATGGAGCACGTGATGATGGAGACAGACGTGAAGGGGACGCTGATCGAGAGGCTGGATCAAGTGGAGGACCGCGTGCTGAAGCTGTGCATGCAGCTGGAGGAGGAGTTGACGGAGAGCGCCGAGAAGAAGAGAGATGAGGAGGAGATCATGAAGAGGAGTGGGAGAGAGGAGAAGATGATCATCGATGAGATTGGAAAGAGTCAGGATCATGTCAAGAAGAAGAAAAAGAAGGGGTTAAAGCAACTTGTGAATCAGTATCTTATGGGAAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.99

Weight (kDa)

6.54

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07985
fragaria_vesca FvH4_7g01080
malus_domestica MD07G1011000.v1.1
prunus_persica Prupe.2G013500_v2.0.a1
pyrus_communis pycom07g00910
rosa_chinensis RchiOBHm_Chr1g0316061
rosa_laevigata RLG00000030705
rosa_multiflora Rmu_sc0002014.1_g000005 Rmu_sc0002531.1_g000037
rosa_roxburghii Rroxscaffold_4G00331160
rosa_rugosa Rorug01G0008600
rosa_samantha Rh1AG018900 Rh1BG012400 Rh1CG016200 Rh1DG012600
rosa_wichuraiana Rw1G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 3 cut(s) 7, 155, 268
AclWI GGATC 2 cut(s) 261, 411
AcuI CTGAAG 1 cut(s) 296
AcvI CACGTG 2 cut(s) 142, 208
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 141
AjiI CACGTC 1 cut(s) 226
AluBI AGCT 3 cut(s) 160, 280, 292
AluI AGCT 3 cut(s) 160, 280, 292
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 261, 411
Aor13HI TCCGGA 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 4, 265
AvaII GGWCC 2 cut(s) 4, 265
BaeGI GKGCMC 1 cut(s) 141
BbrPI CACGTG 2 cut(s) 142, 208
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 193, 208
BceAI ACGGC 1 cut(s) 177
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BclI TGATCA 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 318
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 4, 265
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 4, 265
BmsI GCATC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 381
BsaAI YACGTR 2 cut(s) 142, 208
BsaBI GATNNNNATC 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 377
BseAI TCCGGA 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 381
BseGI GGATG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 377
BseLI CCNNNNNNNGG 1 cut(s) 199
BseRI GAGGAG 6 cut(s) 311, 314, 350, 353, 367, 380
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 270
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 141, 207
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 5 cut(s) 240, 253, 342, 375, 403
BspACI CCGC 3 cut(s) 7, 155, 268
BspDI ATCGAT 1 cut(s) 381
BspEI TCCGGA 1 cut(s) 169
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 1 cut(s) 345
BspPI GGATC 2 cut(s) 261, 411
BssMI GATC 5 cut(s) 240, 253, 342, 375, 403
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 2 cut(s) 320, 344
BstBAI YACGTR 2 cut(s) 142, 208
BstC8I GCNNGC 2 cut(s) 272, 287
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 5 cut(s) 243, 256, 345, 378, 406
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 5 cut(s) 240, 253, 342, 375, 403
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNSI RCATGY 2 cut(s) 22, 289
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 381
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 104
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 272, 287
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 4, 265
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 1 cut(s) 244
CviAII CATG 4 cut(s) 19, 286, 346, 407
CviJI RGCY 5 cut(s) 160, 177, 250, 280, 292
CviKI_1 RGCY 5 cut(s) 160, 177, 250, 280, 292
DdeI CTNAG 1 cut(s) 23
DpnI GATC 5 cut(s) 242, 255, 344, 377, 405
DpnII GATC 5 cut(s) 240, 253, 342, 375, 403
Eam1104I CTCTTC 2 cut(s) 320, 344
EarI CTCTTC 2 cut(s) 320, 344
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 2 cut(s) 4, 265
Eco57I CTGAAG 1 cut(s) 296
Eco72I CACGTG 2 cut(s) 142, 208
EcoRV GATATC 1 cut(s) 165
FaeI CATG 4 cut(s) 22, 289, 349, 410
FaiI YATR 6 cut(s) 20, 287, 347, 408, 461, 472
FaqI GGGAC 1 cut(s) 247
FatI CATG 4 cut(s) 18, 285, 345, 406
FbaI TGATCA 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 314
HaeII RGCGCY 1 cut(s) 318
HapII CCGG 1 cut(s) 170
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 317
Hin1II CATG 4 cut(s) 22, 289, 349, 410
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 2 cut(s) 397, 448
HpaII CCGG 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 2 cut(s) 44, 198
Hpy188III TCNNGA 5 cut(s) 170, 244, 346, 401, 412
Hpy8I GTNNAC 1 cut(s) 306
Hpy99I CGWCG 2 cut(s) 118, 131
HpyAV CCTTC 3 cut(s) 109, 223, 421
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4IV ACGT 3 cut(s) 141, 207, 225
HpyCH4V TGCA 3 cut(s) 51, 285, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 3 cut(s) 141, 207, 225
Hsp92II CATG 4 cut(s) 22, 289, 349, 410
HspAI GCGC 1 cut(s) 315
Kpn2I TCCGGA 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 5 cut(s) 240, 253, 342, 375, 403
LmnI GCTCC 2 cut(s) 157, 202
LpnPI CCDG 4 cut(s) 183, 236, 278, 386
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 179
MaeII ACGT 3 cut(s) 141, 207, 225
MalI GATC 5 cut(s) 242, 255, 344, 377, 405
MboI GATC 5 cut(s) 240, 253, 342, 375, 403
MboII GAAGA 6 cut(s) 334, 337, 361, 382, 427, 430
MfeI CAATTG 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 141, 207
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 406
MroI TCCGGA 1 cut(s) 169
MseI TTAA 1 cut(s) 434
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 29
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeII GATC 5 cut(s) 240, 253, 342, 375, 403
NlaIII CATG 4 cut(s) 22, 289, 349, 410
NmeAIII GCCGAG 1 cut(s) 343
NspI RCATGY 2 cut(s) 22, 289
PaeI GCATGC 1 cut(s) 289
PagI TCATGA 1 cut(s) 345
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 405
PmaCI CACGTG 2 cut(s) 142, 208
PmlI CACGTG 2 cut(s) 142, 208
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 2 cut(s) 142, 208
PspCI CACGTG 2 cut(s) 142, 208
PspPI GGNCC 2 cut(s) 4, 265
PvuII CAGCTG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 434
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 5 cut(s) 240, 253, 342, 375, 403
Sau96I GGNCC 2 cut(s) 4, 265
SchI GAGTC 1 cut(s) 406
SduI GDGCHC 2 cut(s) 141, 207
SetI ASST 7 cut(s) 74, 144, 162, 210, 228, 282, 294
SfaNI GCATC 1 cut(s) 113
SinI GGWCC 2 cut(s) 4, 265
SphI GCATGC 1 cut(s) 289
Sse9I AATT 1 cut(s) 29
SsiI CCGC 3 cut(s) 7, 155, 268
SspMI CTAG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 114
TaiI ACGT 3 cut(s) 144, 210, 228
TaqI TCGA 3 cut(s) 116, 243, 381
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 1 cut(s) 434
Tru9I TTAA 1 cut(s) 434
TscAI CASTG 1 cut(s) 194
TseI GCWGC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 2 cut(s) 144, 323
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 4, 265
XceI RCATGY 2 cut(s) 22, 289
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.