RLG00000030705

protein phosphatase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015075
Physical Location & Seq
Forward (+)
66176050 .. 66176644
595 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030705

Sequence Viewer

Length: 510 bp
ATGACAGCGACTACGGCCAATACGGAGGAGCCGATTCTGTCGAGGCTGGACCGCCTGGACATTATGCTTCGGCAGCTGGAGGAAATCAAGGGGTGCAATCCCATCCATCAATCCTCACACTCGGCCAAGAGCTCTTGCGAATCCACGCCGTCCAGTGGAACCCTAACTAGTGATTACGCACAGGTGTCGTCGACATCGTCCGCCGACTACTTCTCTCCCAAGAGCCTGGAGAAGCACTGCCGTCCGATTCAGAACGTGATGATGGAGACGGACGCCAAGGGGACGCTGATCGAGAGGCTCGATCATGTAGAGGATCGCGTTCTGAAGCTGTGTATGCAGTTGGAGGAAGAACTGGAGGCCGCTGAGAGGAAGAGAGAGGATAGAGATCGGGTCAAGGTTGAGACAGAGGTGAAGGTCGTCGAGGAGAAGAGGACTCCTCACAAGAAGATGGGGTTCAAGCAACTTGTAAAACACTCTCCGAGCCACTTCTCTACTTTTGTGACGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.26

Weight (kDa)

6.39

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07985
fragaria_vesca FvH4_7g01080
malus_domestica MD07G1011000.v1.1
prunus_persica Prupe.2G013500_v2.0.a1
pyrus_communis pycom07g00910
rosa_chinensis RchiOBHm_Chr1g0316061
rosa_laevigata RLG00000030705
rosa_multiflora Rmu_sc0002014.1_g000005 Rmu_sc0002531.1_g000037
rosa_roxburghii Rroxscaffold_4G00331160
rosa_rugosa Rorug01G0008600
rosa_samantha Rh1AG018900 Rh1BG012400 Rh1CG016200 Rh1DG012600
rosa_wichuraiana Rw1G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AccII CGCG 1 cut(s) 318
AciI CCGC 3 cut(s) 52, 201, 360
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 2 cut(s) 15, 123
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 155, 366
AgsI TTSAA 1 cut(s) 457
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 2 cut(s) 54, 225
AluBI AGCT 3 cut(s) 76, 132, 328
AluI AGCT 3 cut(s) 76, 132, 328
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 260, 395
AlwI GGATC 1 cut(s) 321
AoxI GGCC 3 cut(s) 15, 123, 357
ApeKI GCWGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 85
BccI CCATC 4 cut(s) 110, 114, 256, 442
BceAI ACGGC 3 cut(s) 30, 133, 225
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 2 cut(s) 56, 227
BcoDI GTCTC 2 cut(s) 260, 395
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 1 cut(s) 168
BisI GCNGC 2 cut(s) 74, 360
BlsI GCNGC 2 cut(s) 75, 361
Bme1390I CCNGG 2 cut(s) 56, 227
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 30, 160
BmrFI CCNGG 2 cut(s) 56, 227
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpmI CTGGAG 3 cut(s) 98, 248, 374
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 366
Bse1I ACTGG 2 cut(s) 153, 357
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 2 cut(s) 56, 227
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 155, 366
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 153, 357
BseRI GAGGAG 3 cut(s) 41, 426, 437
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 17, 125, 359
BsiHKAI GWGCWC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 155, 366
BsmAI GTCTC 2 cut(s) 260, 395
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 3 cut(s) 17, 125, 359
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 4 cut(s) 288, 301, 313, 385
BspACI CCGC 3 cut(s) 52, 201, 360
BspANI GGCC 3 cut(s) 17, 125, 359
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 30, 160
BspPI GGATC 1 cut(s) 321
BsrI ACTGG 2 cut(s) 153, 357
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 4 cut(s) 288, 301, 313, 385
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 56, 227
Bst6I CTCTTC 2 cut(s) 365, 422
BstACI GRCGYC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 4 cut(s) 291, 304, 316, 388
BstMAI GTCTC 2 cut(s) 260, 395
BstMBI GATC 4 cut(s) 288, 301, 313, 385
BstMWI GCNNNNNNNGC 3 cut(s) 14, 73, 334
BstNI CCWGG 2 cut(s) 56, 227
BstSCI CCNGG 2 cut(s) 54, 225
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 3 cut(s) 17, 125, 359
BtsCI GGATG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 160, 235
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 2 cut(s) 281, 292
CviAII CATG 1 cut(s) 305
DdeI CTNAG 1 cut(s) 363
DpnI GATC 4 cut(s) 290, 303, 315, 387
DpnII GATC 4 cut(s) 288, 301, 313, 385
EaeI YGGCCR 2 cut(s) 15, 123
Eam1104I CTCTTC 2 cut(s) 365, 422
EarI CTCTTC 2 cut(s) 365, 422
EciI GGCGGA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 54, 225
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 1 cut(s) 308
FaiI YATR 3 cut(s) 65, 306, 335
FaqI GGGAC 1 cut(s) 295
FatI CATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 74, 360
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 74, 360
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 74, 360
GsuI CTGGAG 3 cut(s) 98, 248, 374
HaeIII GGCC 3 cut(s) 17, 125, 359
HgaI GACGC 2 cut(s) 281, 292
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 1 cut(s) 308
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 4 cut(s) 34, 140, 247, 433
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 4 cut(s) 246, 252, 324, 480
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 2 cut(s) 193, 422
HpyAV CCTTC 1 cut(s) 406
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 96, 337
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 73, 334
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 4 cut(s) 288, 301, 313, 385
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 9 cut(s) 32, 41, 62, 68, 166, 167, 212, 239, 338
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 499
MalI GATC 4 cut(s) 290, 303, 315, 387
MboI GATC 4 cut(s) 288, 301, 313, 385
MboII GAAGA 4 cut(s) 359, 382, 439, 457
MhlI GDGCHC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 321
MspA1I CMGCKG 2 cut(s) 76, 362
MspR9I CCNGG 2 cut(s) 56, 227
MvaI CCWGG 2 cut(s) 56, 227
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 14, 73, 334
NdeII GATC 4 cut(s) 288, 301, 313, 385
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 30, 160
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 499
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 194, 297
PfeI GAWTC 3 cut(s) 34, 140, 247
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 75, 361
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 54, 225
PspGI CCWGG 2 cut(s) 54, 225
PspN4I GGNNCC 2 cut(s) 30, 160
PspPI GGNCC 1 cut(s) 49
PsyI GACNNNGTC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 76
SacI GAGCTC 1 cut(s) 134
SalI GTCGAC 1 cut(s) 190
SatI GCNGC 2 cut(s) 74, 360
Sau3AI GATC 4 cut(s) 288, 301, 313, 385
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 2 cut(s) 56, 227
SduI GDGCHC 1 cut(s) 134
SetI ASST 9 cut(s) 78, 134, 186, 258, 330, 399, 411, 417, 509
SinI GGWCC 1 cut(s) 49
SpeI ACTAGT 1 cut(s) 167
SsiI CCGC 3 cut(s) 52, 201, 360
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 54, 225
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 41, 191, 291, 300, 420
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 3 cut(s) 34, 140, 247
TscAI CASTG 2 cut(s) 160, 242
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 499
TspGWI ACGGA 2 cut(s) 38, 284
TspRI CASTG 2 cut(s) 160, 242
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.