Rmu_sc0002014.1_g000005

protein phosphatase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002014.1
OG0015075
Physical Location & Seq
Forward (+)
19203 .. 22402
3200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002014.1_g000005.1.cds

Sequence Viewer

Length: 702 bp
atgattcgcaatcgcatccgccacaaaattggcttcacggggagcaaaggagaagtcaatatgatcaaagctgctagccaagcaggcaatgtctctagcaagggtccggagtctccaagggatggtacacttcttgttgatgacatgccttggatggagggaaaaagatcgaagaagaagaagaaagtgatggtggcagtaacaatgacagcgactacggccaatacggacgagccgattctgtcgaggctgggccgcctggacattatgcttcggcagctggaggaaatcaatgggtgcaatcccatccatcaatcctcacactcggccaagagctcttgcgaatccacgccgtccagtggaaccctaaccagtgattacgcacaggtgtcgtcgacgacatccgccgactacttctctcccaagagcctggagaagcactgccgtccgattcagaacgtgatgatggagatggactccaaggggacgctgatcgagaggctcgatcatgtagaggatcgcgttctgaagctatgtatggggttggaggaagaactggaggccgctgagaggaagagagaggatagagatcgggtcaaggttgagacagaggtgaaggtcgtcgaggagaagaggactcctcacaagaagaaggggttcaagcaacttgtaaaacagtgtgttacagggaaaacaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.08

Weight (kDa)

9.22

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07985
fragaria_vesca FvH4_7g01080
malus_domestica MD07G1011000.v1.1
prunus_persica Prupe.2G013500_v2.0.a1
pyrus_communis pycom07g00910
rosa_chinensis RchiOBHm_Chr1g0316061
rosa_laevigata RLG00000030705
rosa_multiflora Rmu_sc0002014.1_g000005 Rmu_sc0002531.1_g000037
rosa_roxburghii Rroxscaffold_4G00331160
rosa_rugosa Rorug01G0008600
rosa_samantha Rh1AG018900 Rh1BG012400 Rh1CG016200 Rh1DG012600
rosa_wichuraiana Rw1G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AccI GTMKAC 1 cut(s) 395
AccII CGCG 1 cut(s) 522
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 4 cut(s) 19, 256, 405, 564
AclWI GGATC 1 cut(s) 525
AcoI YGGCCR 2 cut(s) 219, 327
AcuI CTGAAG 1 cut(s) 548
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 3 cut(s) 122, 359, 570
AgsI TTSAA 1 cut(s) 661
AjnI CCWGG 2 cut(s) 258, 429
AluBI AGCT 4 cut(s) 71, 280, 336, 532
AluI AGCT 4 cut(s) 71, 280, 336, 532
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 97, 117, 599
AlwI GGATC 1 cut(s) 525
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 4 cut(s) 219, 253, 327, 561
ApeKI GCWGC 2 cut(s) 71, 277
ArsI GACNNNNNNTTYG 2 cut(s) 39, 71
Asp700I GAANNNNTTC 1 cut(s) 656
AspS9I GGNCC 2 cut(s) 104, 253
AsuHPI GGTGA 1 cut(s) 625
AsuNHI GCTAGC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 58, 289
BccI CCATC 7 cut(s) 116, 148, 184, 314, 318, 460, 466
BceAI ACGGC 3 cut(s) 234, 337, 429
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BciT130I CCWGG 2 cut(s) 260, 431
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 3 cut(s) 97, 117, 599
BfaI CTAG 2 cut(s) 75, 96
BglI GCCNNNNNGGC 1 cut(s) 84
BisI GCNGC 4 cut(s) 72, 256, 278, 564
BlsI GCNGC 4 cut(s) 73, 257, 279, 565
Bme1390I CCNGG 2 cut(s) 260, 431
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 104, 253
BmiI GGNNCC 2 cut(s) 105, 364
BmrFI CCNGG 2 cut(s) 260, 431
BmsI GCATC 1 cut(s) 24
BmtI GCTAGC 1 cut(s) 78
BplI GAGNNNNNCTC 4 cut(s) 461, 493, 625, 657
BpmI CTGGAG 3 cut(s) 302, 452, 578
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 116, 149, 480
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 359, 570
Bse1I ACTGG 3 cut(s) 357, 372, 561
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 2 cut(s) 260, 431
BseDI CCNNGG 3 cut(s) 116, 149, 480
BseGI GGATG 5 cut(s) 15, 127, 159, 306, 401
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 3 cut(s) 122, 359, 570
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 3 cut(s) 357, 372, 561
BseRI GAGGAG 2 cut(s) 630, 641
BseXI GCAGC 2 cut(s) 58, 289
BseYI CCCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 4 cut(s) 221, 255, 329, 563
BsiHKAI GWGCWC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 3 cut(s) 122, 359, 570
BsmAI GTCTC 3 cut(s) 97, 117, 599
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 4 cut(s) 221, 255, 329, 563
Bsp1286I GDGCHC 1 cut(s) 338
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 6 cut(s) 63, 167, 492, 505, 517, 589
BspACI CCGC 4 cut(s) 19, 256, 405, 564
BspANI GGCC 4 cut(s) 221, 255, 329, 563
BspCNI CTCAG 1 cut(s) 559
BspEI TCCGGA 1 cut(s) 106
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 2 cut(s) 105, 364
BspOI GCTAGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 525
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 3 cut(s) 357, 372, 561
BssECI CCNNGG 3 cut(s) 116, 149, 480
BssMI GATC 6 cut(s) 63, 167, 492, 505, 517, 589
BssT1I CCWWGG 3 cut(s) 116, 149, 480
Bst2UI CCWGG 2 cut(s) 260, 431
Bst4CI ACNGT 1 cut(s) 678
Bst6I CTCTTC 2 cut(s) 569, 626
BstC8I GCNNGC 2 cut(s) 76, 85
BstDEI CTNAG 1 cut(s) 567
BstF5I GGATG 5 cut(s) 15, 127, 159, 306, 401
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 6 cut(s) 66, 170, 495, 508, 520, 592
BstMAI GTCTC 3 cut(s) 97, 117, 599
BstMBI GATC 6 cut(s) 63, 167, 492, 505, 517, 589
BstMWI GCNNNNNNNGC 4 cut(s) 80, 84, 218, 277
BstNI CCWGG 2 cut(s) 260, 431
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 2 cut(s) 258, 429
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 58, 289
BstXI CCANNNNNNTGG 2 cut(s) 29, 430
BsuRI GGCC 4 cut(s) 221, 255, 329, 563
BtsCI GGATG 5 cut(s) 15, 127, 159, 306, 401
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 4 cut(s) 364, 379, 439, 683
Cac8I GCNNGC 2 cut(s) 76, 85
Cfr13I GGNCC 2 cut(s) 104, 253
CseI GACGC 1 cut(s) 496
Csp6I GTAC 1 cut(s) 126
CviAII CATG 2 cut(s) 145, 509
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 1 cut(s) 567
DpnI GATC 6 cut(s) 65, 169, 494, 507, 519, 591
DpnII GATC 6 cut(s) 63, 167, 492, 505, 517, 589
EaeI YGGCCR 2 cut(s) 219, 327
Eam1104I CTCTTC 2 cut(s) 569, 626
EarI CTCTTC 2 cut(s) 569, 626
EciI GGCGGA 2 cut(s) 8, 394
Ecl136II GAGCTC 1 cut(s) 336
Eco130I CCWWGG 3 cut(s) 116, 149, 480
Eco24I GRGCYC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 258, 429
EcoT14I CCWWGG 3 cut(s) 116, 149, 480
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 3 cut(s) 116, 149, 480
FaeI CATG 2 cut(s) 148, 512
FaiI YATR 6 cut(s) 62, 146, 269, 510, 535, 539
FaqI GGGAC 1 cut(s) 499
FatI CATG 2 cut(s) 144, 508
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 4 cut(s) 72, 256, 278, 564
FokI GGATG 5 cut(s) 2, 134, 166, 293, 388
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 4 cut(s) 72, 256, 278, 564
FspBI CTAG 2 cut(s) 75, 96
GluI GCNGC 4 cut(s) 72, 256, 278, 564
GsaI CCCAGC 1 cut(s) 254
GsuI CTGGAG 3 cut(s) 302, 452, 578
HaeIII GGCC 4 cut(s) 221, 255, 329, 563
HapII CCGG 1 cut(s) 107
HgaI GACGC 1 cut(s) 496
Hin1II CATG 2 cut(s) 148, 512
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 7 cut(s) 4, 110, 238, 344, 451, 476, 637
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 625
Hpy166II GTNNAC 2 cut(s) 128, 396
Hpy188I TCNGA 3 cut(s) 450, 456, 528
Hpy188III TCNNGA 2 cut(s) 107, 496
Hpy8I GTNNAC 2 cut(s) 128, 396
Hpy99I CGWCG 3 cut(s) 397, 400, 626
HpyAV CCTTC 2 cut(s) 610, 646
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 84, 218, 277
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 148, 512
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 6 cut(s) 63, 167, 492, 505, 517, 589
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 2 cut(s) 58, 289
LweI GCATC 1 cut(s) 24
MaeI CTAG 2 cut(s) 75, 96
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 199, 682
MalI GATC 6 cut(s) 65, 169, 494, 507, 519, 591
MboI GATC 6 cut(s) 63, 167, 492, 505, 517, 589
MboII GAAGA 8 cut(s) 184, 187, 190, 193, 563, 586, 643, 661
MhlI GDGCHC 1 cut(s) 338
MluCI AATT 2 cut(s) 27, 697
MlyI GAGTC 3 cut(s) 119, 470, 631
MmeI TCCRAC 1 cut(s) 525
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 656
MseI TTAA 1 cut(s) 700
MspA1I CMGCKG 2 cut(s) 280, 566
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 260, 431
MvaI CCWGG 2 cut(s) 260, 431
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 4 cut(s) 80, 84, 218, 277
NdeII GATC 6 cut(s) 63, 167, 492, 505, 517, 589
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 148, 512
NlaIV GGNNCC 2 cut(s) 105, 364
NmeAIII GCCGAG 1 cut(s) 305
NspI RCATGY 1 cut(s) 148
PcsI WCGNNNNNNNCGW 2 cut(s) 233, 501
PdmI GAANNNNTTC 1 cut(s) 656
PfeI GAWTC 4 cut(s) 4, 238, 344, 451
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 4 cut(s) 73, 257, 279, 565
PleI GAGTC 3 cut(s) 118, 470, 631
PpsI GAGTC 3 cut(s) 118, 470, 631
Psp124BI GAGCTC 1 cut(s) 338
Psp6I CCWGG 2 cut(s) 258, 429
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 2 cut(s) 258, 429
PspN4I GGNNCC 2 cut(s) 105, 364
PspPI GGNCC 2 cut(s) 104, 253
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
SacI GAGCTC 1 cut(s) 338
SalI GTCGAC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 700
SatI GCNGC 4 cut(s) 72, 256, 278, 564
Sau3AI GATC 6 cut(s) 63, 167, 492, 505, 517, 589
Sau96I GGNCC 2 cut(s) 104, 253
SchI GAGTC 3 cut(s) 119, 470, 631
ScrFI CCNGG 2 cut(s) 260, 431
SduI GDGCHC 1 cut(s) 338
SetI ASST 9 cut(s) 73, 282, 338, 390, 462, 534, 603, 615, 621
SfaNI GCATC 1 cut(s) 24
SgrDI CGTCGACG 1 cut(s) 394
SinI GGWCC 1 cut(s) 104
Sse9I AATT 2 cut(s) 27, 697
SsiI CCGC 4 cut(s) 19, 256, 405, 564
SspMI CTAG 2 cut(s) 75, 96
SstI GAGCTC 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 258, 429
StyI CCWWGG 3 cut(s) 116, 149, 480
TaaI ACNGT 1 cut(s) 678
TaiI ACGT 1 cut(s) 462
TaqI TCGA 6 cut(s) 170, 245, 395, 495, 504, 624
TasI AATT 2 cut(s) 27, 697
TauI GCSGC 2 cut(s) 258, 566
TfiI GAWTC 4 cut(s) 4, 238, 344, 451
Tru1I TTAA 1 cut(s) 700
Tru9I TTAA 1 cut(s) 700
TscAI CASTG 4 cut(s) 364, 379, 446, 683
TseI GCWGC 2 cut(s) 71, 277
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 4 cut(s) 364, 379, 446, 683
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 104
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 656
XspI CTAG 2 cut(s) 75, 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.