Rmu_sc0002531.1_g000037

protein phosphatase binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002531.1
OG0015075
Physical Location & Seq
Forward (+)
214612 .. 215109
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002531.1_g000037.1.cds

Sequence Viewer

Length: 498 bp
atgacagcgactacggccaatacggaggagccgattctgtcgaggctggaccgcctggacattatgcttcggcagctggaggaaatcaatgggtgcaatcccatccatcaatcctcacactcggccaagagctcttgcgaatccacgccgtccagtggaaccctaactagtgattacgcacaggtgtcgtcgacgtcgtcagccgactacttctctcccaagagcctggagaagcactgccgtccttttcagaaagtgatgatagagacggacgtcaaggggacgctgatcgagaggctcgatcatgtagaggatcgcgttctgaagctatgtatggggttggaggaagaactggaggccgctgagaggaagagagaggatagagatcgggtcaaggttgagacagaggtgaaggtcgtcgaggagaagaggactcctcacaagaagaaggggttcaagcaacttgtacaacagtgtgttacagggaaaacaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.68

Weight (kDa)

6.23

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07985
fragaria_vesca FvH4_7g01080
malus_domestica MD07G1011000.v1.1
prunus_persica Prupe.2G013500_v2.0.a1
pyrus_communis pycom07g00910
rosa_chinensis RchiOBHm_Chr1g0316061
rosa_laevigata RLG00000030705
rosa_multiflora Rmu_sc0002014.1_g000005 Rmu_sc0002531.1_g000037
rosa_roxburghii Rroxscaffold_4G00331160
rosa_rugosa Rorug01G0008600
rosa_samantha Rh1AG018900 Rh1BG012400 Rh1CG016200 Rh1DG012600
rosa_wichuraiana Rw1G001210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 197, 276
AccI GTMKAC 1 cut(s) 191
AccII CGCG 1 cut(s) 318
AciI CCGC 2 cut(s) 52, 360
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 2 cut(s) 15, 123
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 2 cut(s) 194, 273
AfaI GTAC 1 cut(s) 468
AfiI CCNNNNNNNGG 2 cut(s) 155, 366
AgsI TTSAA 1 cut(s) 457
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 2 cut(s) 54, 225
AluBI AGCT 3 cut(s) 76, 132, 328
AluI AGCT 3 cut(s) 76, 132, 328
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 260, 395
AlwI GGATC 1 cut(s) 321
AoxI GGCC 3 cut(s) 15, 123, 357
ApeKI GCWGC 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 110, 114
BceAI ACGGC 3 cut(s) 30, 133, 225
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 2 cut(s) 56, 227
BcoDI GTCTC 2 cut(s) 260, 395
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 1 cut(s) 168
BisI GCNGC 2 cut(s) 74, 360
BlsI GCNGC 2 cut(s) 75, 361
Bme1390I CCNGG 2 cut(s) 56, 227
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 30, 160
BmrFI CCNGG 2 cut(s) 56, 227
BoxI GACNNNNGTC 1 cut(s) 272
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpmI CTGGAG 3 cut(s) 98, 248, 374
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 2 cut(s) 194, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 366
Bse1I ACTGG 2 cut(s) 153, 357
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 2 cut(s) 56, 227
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 155, 366
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 153, 357
BseRI GAGGAG 3 cut(s) 41, 426, 437
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 17, 125, 359
BsiHKAI GWGCWC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 155, 366
BsmAI GTCTC 2 cut(s) 260, 395
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 3 cut(s) 17, 125, 359
Bsp1286I GDGCHC 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 466
Bsp143I GATC 4 cut(s) 288, 301, 313, 385
BspACI CCGC 2 cut(s) 52, 360
BspANI GGCC 3 cut(s) 17, 125, 359
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 30, 160
BspPI GGATC 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 466
BsrI ACTGG 2 cut(s) 153, 357
BssMI GATC 4 cut(s) 288, 301, 313, 385
BssNI GRCGYC 2 cut(s) 194, 273
Bst2UI CCWGG 2 cut(s) 56, 227
Bst4CI ACNGT 1 cut(s) 474
Bst6I CTCTTC 2 cut(s) 365, 422
BstACI GRCGYC 2 cut(s) 194, 273
BstAUI TGTACA 1 cut(s) 466
BstDEI CTNAG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 4 cut(s) 291, 304, 316, 388
BstMAI GTCTC 2 cut(s) 260, 395
BstMBI GATC 4 cut(s) 288, 301, 313, 385
BstMWI GCNNNNNNNGC 2 cut(s) 14, 73
BstNI CCWGG 2 cut(s) 56, 227
BstPAI GACNNNNGTC 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 54, 225
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuRI GGCC 3 cut(s) 17, 125, 359
BtsCI GGATG 1 cut(s) 102
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 3 cut(s) 160, 235, 479
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 467
CviAII CATG 1 cut(s) 305
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 1 cut(s) 363
DpnI GATC 4 cut(s) 290, 303, 315, 387
DpnII GATC 4 cut(s) 288, 301, 313, 385
EaeI YGGCCR 2 cut(s) 15, 123
Eam1104I CTCTTC 2 cut(s) 365, 422
EarI CTCTTC 2 cut(s) 365, 422
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 54, 225
EcoT38I GRGCYC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 1 cut(s) 308
FaiI YATR 4 cut(s) 65, 306, 331, 335
FaqI GGGAC 1 cut(s) 295
FatI CATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 74, 360
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 74, 360
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 74, 360
GsuI CTGGAG 3 cut(s) 98, 248, 374
HaeIII GGCC 3 cut(s) 17, 125, 359
HgaI GACGC 1 cut(s) 292
Hin1I GRCGYC 2 cut(s) 194, 273
Hin1II CATG 1 cut(s) 308
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 3 cut(s) 34, 140, 433
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 252, 324
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 4 cut(s) 193, 196, 199, 422
HpyAV CCTTC 2 cut(s) 406, 442
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4IV ACGT 2 cut(s) 194, 273
HpyCH4V TGCA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 73
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 194, 273
Hsp92I GRCGYC 2 cut(s) 194, 273
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 4 cut(s) 288, 301, 313, 385
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 168
MaeII ACGT 2 cut(s) 194, 273
MaeIII GTNAC 1 cut(s) 478
MalI GATC 4 cut(s) 290, 303, 315, 387
MboI GATC 4 cut(s) 288, 301, 313, 385
MboII GAAGA 4 cut(s) 359, 382, 439, 457
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 493
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 496
MspA1I CMGCKG 2 cut(s) 76, 362
MspR9I CCNGG 2 cut(s) 56, 227
MvaI CCWGG 2 cut(s) 56, 227
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 2 cut(s) 14, 73
NdeII GATC 4 cut(s) 288, 301, 313, 385
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 30, 160
NmeAIII GCCGAG 1 cut(s) 101
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 194, 297
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 34, 140
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 75, 361
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PshAI GACNNNNGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 54, 225
PspGI CCWGG 2 cut(s) 54, 225
PspN4I GGNNCC 2 cut(s) 30, 160
PspPI GGNCC 1 cut(s) 49
PsyI GACNNNGTC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 76
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
SacI GAGCTC 1 cut(s) 134
SalI GTCGAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 2 cut(s) 74, 360
Sau3AI GATC 4 cut(s) 288, 301, 313, 385
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 2 cut(s) 56, 227
SduI GDGCHC 1 cut(s) 134
SetI ASST 9 cut(s) 78, 134, 186, 197, 276, 330, 399, 411, 417
SgrDI CGTCGACG 1 cut(s) 190
SinI GGWCC 1 cut(s) 49
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 1 cut(s) 493
SsiI CCGC 2 cut(s) 52, 360
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 54, 225
TaaI ACNGT 1 cut(s) 474
TaiI ACGT 2 cut(s) 197, 276
TaqI TCGA 5 cut(s) 41, 191, 291, 300, 420
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 466
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 2 cut(s) 34, 140
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 3 cut(s) 160, 242, 479
TseI GCWGC 1 cut(s) 73
TspGWI ACGGA 2 cut(s) 38, 284
TspRI CASTG 3 cut(s) 160, 242, 479
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 1 cut(s) 168
ZraI GACGTC 2 cut(s) 195, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.