Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011890

Physical Location & Seq

Genomic Coordinates Forward (+)

1641290 .. 1645608

Gene Structure 4319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1018800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGGCACTGCCGGCGGAACCGCACTCCGGCCACAACTCGACTAATCATCCGGATCGTACCGATTTCAAATTCAATTCCGATATGGAGTCACTCGGGATCCCTCCTCTCGACCCTGAATTTTTCTCATCGGACAACGGGATGGCTGCCGGCGCTGTGCCCTCCGACGACCCATTCATGTCCGATCTCGGCTTTGGGTTCGGTGATGATGGAAATTGCGAGTTCGAGCTTACCTTCGACGACTTGGACGACCTCTACCTCCCGTCGGAGGCCGAGGACTTCCTCGTCCCCGACGGCTTAGATCCCAGCGCGGCTGCGTTGAATTCGGGGTCTCCTGAATCGGGTAGCTCCGCGATTTCGGTTTCCGGCGATGATAAGGGGGCTTTGGACATTTCCAGGTTTCTGAATTGTCCGGCCTCGTCAAATGAGTGTTCGGAGAATTCCGATGGGCCTGCGTCGTCTCAGGGCTCTGGGATTTCCGAGGCGGTGGACTCGAATTCACATTCGGGCAATTCGGATGATGAGAAGGTTAAGGTGGAGGACGAATTGGCAAAAAATTACCTTGTGAAAAGGAAGAAAGAGAGCGACGAAGGCAACGCGGAGTCGCGAAGTGCCAAGTATCGGAGGTCGGAGAACAACAACAACAACAATGCCGCTTCTGTGAATGTGAGTGCGAGTGCGAATGACGAGGACGACAAGAGGAAGGCGAGATTGATACGGAACAGAGAAAGTGCTCAGCTTTCTAGGCAGAGGAAAAAGCATTATGTGGAGGAGCTTGAGGACAAGGTGAGGGCTATGCATTCAACTATTGCTGATTTGAACAATAGGATTTCTTATGTTATTGCCGAGAATGCTACTTTGAAGCAGCAATTGAGCAGTCCGCCACCGCCATCACATTTAGGGATGCACCTGCATCCTCCCATGCCACCGATGCCTTATCCATGGATGCCATATTCGCCCTATGTTGTGAACCCACAAGGGTCCCAGTCCCTTTTGGTACCCATTCCTAGATTGAAATCCCAGCAGCCAGCAGCTGCGCCCAAGTCCAGAAAGTCGGACAGTAAGAAGAGTGAGGGTAGAACTAAGAAGGTTGCTAGCGTTAGTTTTCTGGGTCTATTGTTTTTTATCTTGCTTTTTGGTGGGCTTGTTCCTATGGTGAATGTTAACTTTAGTGGTGTAATGGATAGAGGTTTTGGTGGGTCTTCTTATGTTCATGATAGGTTCAATGGTCAAAACAGAGGGAGACTTTTGAATGTTCACGGTCATTTGAACGCATCTGAAGAAATTATATCCTCGGGCATATCTGGTGGGAAATTCGATGTCTCTAACAAAATTCTTCATGAGAGGGGTCATCATACAAGAAATATGCCGAAAGAACAAGGGTCACGATCTGTACCGGGTTCTGATGAATTTGCTCGTCTGCACAATATTAGTAGTGAGCCACTTGTGGCTTCTTTGTATGTTCCAAGAAATGAGAAGCTTGTCAAGATTGACGGAAACTTGATTATACATTCGGTCCTGGCCAGTGAGAAAGCTATGGCTTCCCATGAGCCTTTTGAAAGGCAGAATAGTAGAGAGACTGGTTTGGCTGTGGCTAAAGATTTGGTTTCAGCATTAGCTATTCCTAAACCGGGAGGGAACAGAGGGATTCATGCTTCCTTATACAGAAGTTCTGCTGGACCACACAAGGCTCTTACAAGTGGTTCAACTGATGTTCCAAAGGATCATATGAAGTCAACTTCAGCTGATGGTAAACTGCAACAGTGGTTCCGTGAAGGTCTTGCAGGACCAATGTTGAGCTCTGGAATGTGCACTGAAGTGTTCCAGTTCGATGTCTCAGCTGCTACCTCTCCAGGAGGTATAATACCTGCATCTGCAGTTTCCAATGCTTCTGAACACCGTCAGAATACTACAGAGCTGAACAGGGGAAGGAATAGAAGGATCCTCCGTGGTCTCCCAATTCCCCTTCCTGGATCCGGTCATAACGTAACTGAAGAAAATGTGACGGGAAATCAACAGAACAACTCCCTGCCTGGTAATAGATCGGTTTCTCCCATGGTGGTCTCTGTTCTCGTTGATCCTCGAGAGGCTGGTGATATCGACGTCGATGGCATGATCAAGCCGAAGTCACTTTCTCGAATTTTCGTTGTAGTGCTTTTAGACAGCGTGAAATATGTCACATACTCATGCGTGCTCCCTCGATCTGGTCCTCACCTGGTGACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0006972 GO:0006986 GO:0006990 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901522 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

742

Amino Acids

79.96

Weight (kDa)

6.08

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	229 - 290	5.1e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40950 AT3G56660
fragaria_vesca	FvH4_4g26350
malus_domestica	MD07G1018800.v1.1
prunus_persica	Prupe.2G020400_v2.0.a1
pyrus_communis	pycom02g25650 pycom07g01490 pycom11g01510
rosa_chinensis	RchiOBHm_Chr4g0433931
rosa_laevigata	RLG00000006716
rosa_multiflora	Rmu_sc0000352.1_g000015 Rmu_sc0004983.1_g000009 Rmu_sc0023229.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375350
rosa_samantha	Rh4AG327400 Rh4BG334700 Rh4CG350500 Rh4DG331600
rosa_wichuraiana	Rw4G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	915
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	2103
Acc36I	ACCTGC	2 cut(s)	915, 1873
Acc65I	GGTACC	1 cut(s)	994
AccB1I	GGYRCC	1 cut(s)	994
AccII	CGCG	4 cut(s)	308, 350, 596, 604
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	9 cut(s)	14, 20, 308, 348, 482, 596, 651, 878, 884
AcoI	YGGCCR	2 cut(s)	28, 1518
AcsI	RAATTY	9 cut(s)	68, 116, 319, 436, 493, 1310, 1329, 1406, 2136
AcuI	CTGAAG	4 cut(s)	1296, 1722, 1833, 2010
AcyI	GRCGYC	1 cut(s)	2100
AdeI	CACNNNGTG	1 cut(s)	2215
AfaI	GTAC	3 cut(s)	58, 996, 1392
AfiI	CCNNNNNNNGG	9 cut(s)	26, 262, 265, 338, 618, 1628, 1967, 1973, 2201
AjnI	CCWGG	6 cut(s)	392, 1515, 1849, 1966, 2029, 2211
AleI	CACNNNNGTG	1 cut(s)	1814
Alw21I	GWGCWC	4 cut(s)	733, 1799, 1811, 2193
Alw26I	GTCTC	8 cut(s)	333, 462, 1234, 1324, 1568, 1837, 1955, 2065
Alw44I	GTGCAC	1 cut(s)	1807
AlwNI	CAGNNNCTG	1 cut(s)	1031
Ama87I	CYCGRG	3 cut(s)	92, 1291, 2079
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	5 cut(s)	28, 267, 411, 446, 1518
ApaLI	GTGCAC	1 cut(s)	1807
ApeKI	GCWGC	7 cut(s)	143, 311, 862, 1021, 1028, 1031, 1838
ApoI	RAATTY	9 cut(s)	68, 116, 319, 436, 493, 1310, 1329, 1406, 2136
Asp718I	GGTACC	1 cut(s)	994
AspLEI	GCGC	3 cut(s)	152, 308, 1036
AspS9I	GGNCC	6 cut(s)	446, 978, 1513, 1676, 1784, 2204
AsuC2I	CCSGG	2 cut(s)	1395, 1629
AsuHPI	GGTGA	5 cut(s)	212, 796, 1165, 2102, 2201
AsuNHI	GCTAGC	1 cut(s)	1091
AvaI	CYCGRG	3 cut(s)	92, 1291, 2079
AvaII	GGWCC	5 cut(s)	978, 1513, 1676, 1784, 2204
BaeGI	GKGCMC	2 cut(s)	159, 1811
BalI	TGGCCA	1 cut(s)	1520
BamHI	GGATCC	3 cut(s)	96, 1938, 1970
BanI	GGYRCC	1 cut(s)	994
BanII	GRGCYC	2 cut(s)	467, 1799
BbsI	GAAGAC	1 cut(s)	1191
Bbv12I	GWGCWC	4 cut(s)	733, 1799, 1811, 2193
BbvI	GCAGC	7 cut(s)	130, 298, 874, 1018, 1033, 1040, 1825
BccI	CCATC	6 cut(s)	133, 200, 437, 895, 1739, 2099
BceAI	ACGGC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	6 cut(s)	394, 1517, 1851, 1968, 2031, 2213
BclI	TGATCA	1 cut(s)	2112
BcnI	CCSGG	2 cut(s)	1395, 1629
BcoDI	GTCTC	8 cut(s)	333, 462, 1234, 1324, 1568, 1837, 1955, 2065
BfaI	CTAG	3 cut(s)	741, 1005, 1092
BfmI	CTRYAG	2 cut(s)	1872, 1908
BfoI	RGCGCY	1 cut(s)	153
BfuAI	ACCTGC	2 cut(s)	915, 1873
BisI	GCNGC	9 cut(s)	144, 309, 312, 651, 863, 1022, 1029, 1032, 1839
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	9 cut(s)	145, 310, 313, 652, 864, 1023, 1030, 1033, 1840
Bme1390I	CCNGG	8 cut(s)	394, 1395, 1517, 1629, 1851, 1968, 2031, 2213
Bme18I	GGWCC	5 cut(s)	978, 1513, 1676, 1784, 2204
BmeT110I	CYCGRG	3 cut(s)	92, 1291, 2079
BmgT120I	GGNCC	6 cut(s)	446, 978, 1513, 1676, 1784, 2204
BmiI	GGNNCC	8 cut(s)	18, 98, 979, 980, 996, 1766, 1940, 1972
BmrFI	CCNGG	8 cut(s)	394, 1395, 1517, 1629, 1851, 1968, 2031, 2213
BmrI	ACTGGG	1 cut(s)	976
BmsI	GCATC	6 cut(s)	891, 918, 919, 933, 1280, 1877
BmtI	GCTAGC	1 cut(s)	1095
BmuI	ACTGGG	1 cut(s)	976
BpiI	GAAGAC	1 cut(s)	1191
BpmI	CTGGAG	1 cut(s)	1833
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	794
BpuMI	CCSGG	2 cut(s)	1395, 1629
BsaBI	GATNNNNATC	1 cut(s)	1012
BsaHI	GRCGYC	1 cut(s)	2100
BsaI	GGTCTC	3 cut(s)	333, 1955, 2065
BsaJI	CCNNGG	6 cut(s)	270, 477, 938, 1290, 1945, 2052
BsaWI	WCCGGW	2 cut(s)	49, 1973
Bsc4I	CCNNNNNNNGG	9 cut(s)	26, 262, 265, 338, 618, 1628, 1967, 1973, 2201
Bse118I	RCCGGY	2 cut(s)	10, 146
Bse1I	ACTGG	4 cut(s)	982, 1521, 1582, 1822
Bse8I	GATNNNNATC	1 cut(s)	1012
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	6 cut(s)	394, 1517, 1851, 1968, 2031, 2213
BseDI	CCNNGG	6 cut(s)	270, 477, 938, 1290, 1945, 2052
BseGI	GGATG	6 cut(s)	46, 144, 520, 906, 910, 948
BseJI	GATNNNNATC	1 cut(s)	1012
BseLI	CCNNNNNNNGG	9 cut(s)	26, 262, 265, 338, 618, 1628, 1967, 1973, 2201
BseMII	CTCAG	3 cut(s)	473, 746, 1848
BseNI	ACTGG	4 cut(s)	982, 1521, 1582, 1822
BseRI	GAGGAG	2 cut(s)	93, 782
BseSI	GKGCMC	2 cut(s)	159, 1811
BseXI	GCAGC	7 cut(s)	130, 298, 874, 1018, 1033, 1040, 1825
BseYI	CCCAGC	2 cut(s)	302, 1017
BsgI	GTGCAG	1 cut(s)	1403
Bsh1236I	CGCG	4 cut(s)	308, 350, 596, 604
BshFI	GGCC	5 cut(s)	30, 269, 413, 448, 1520
BshNI	GGYRCC	1 cut(s)	994
BsiHKAI	GWGCWC	4 cut(s)	733, 1799, 1811, 2193
BsiHKCI	CYCGRG	3 cut(s)	92, 1291, 2079
BsiSI	CCGG	9 cut(s)	11, 27, 50, 147, 363, 410, 1394, 1628, 1974
BslFI	GGGAC	3 cut(s)	269, 964, 970
BslI	CCNNNNNNNGG	9 cut(s)	26, 262, 265, 338, 618, 1628, 1967, 1973, 2201
BsmAI	GTCTC	8 cut(s)	333, 462, 1234, 1324, 1568, 1837, 1955, 2065
BsmBI	CGTCTC	1 cut(s)	462
BsmFI	GGGAC	3 cut(s)	269, 964, 970
BsmI	GAATGC	2 cut(s)	796, 853
BsnI	GGCC	5 cut(s)	30, 269, 413, 448, 1520
Bso31I	GGTCTC	3 cut(s)	333, 1955, 2065
BsoBI	CYCGRG	3 cut(s)	92, 1291, 2079
Bsp1286I	GDGCHC	6 cut(s)	159, 467, 733, 1799, 1811, 2193
Bsp13I	TCCGGA	1 cut(s)	49
Bsp1720I	GCTNAGC	1 cut(s)	732
Bsp19I	CCATGG	2 cut(s)	938, 2052
Bsp68I	TCGCGA	1 cut(s)	604
BspACI	CCGC	9 cut(s)	14, 20, 308, 348, 482, 596, 651, 878, 884
BspANI	GGCC	5 cut(s)	30, 269, 413, 448, 1520
BspCNI	CTCAG	3 cut(s)	472, 745, 1847
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	4 cut(s)	308, 350, 596, 604
BspHI	TCATGA	2 cut(s)	1210, 1336
BspLI	GGNNCC	8 cut(s)	18, 98, 979, 980, 996, 1766, 1940, 1972
BspMAI	CTGCAG	1 cut(s)	1876
BspMI	ACCTGC	2 cut(s)	915, 1873
BspOI	GCTAGC	1 cut(s)	1095
BspT107I	GGYRCC	1 cut(s)	994
BspTNI	GGTCTC	3 cut(s)	333, 1955, 2065
BsrFI	RCCGGY	2 cut(s)	10, 146
BsrI	ACTGG	4 cut(s)	982, 1521, 1582, 1822
BssAI	RCCGGY	2 cut(s)	10, 146
BssECI	CCNNGG	6 cut(s)	270, 477, 938, 1290, 1945, 2052
BssNI	GRCGYC	1 cut(s)	2100
BssT1I	CCWWGG	2 cut(s)	938, 2052
Bst2UI	CCWGG	6 cut(s)	394, 1517, 1851, 1968, 2031, 2213
Bst4CI	ACNGT	4 cut(s)	1058, 1259, 1761, 1898
Bst6I	CTCTTC	1 cut(s)	1058
BstACI	GRCGYC	1 cut(s)	2100
BstC8I	GCNNGC	6 cut(s)	12, 148, 450, 1026, 1093, 2189
BstDEI	CTNAG	5 cut(s)	295, 459, 732, 1080, 1834
BstDSI	CCRYGG	3 cut(s)	938, 1945, 2052
BstF5I	GGATG	6 cut(s)	46, 144, 520, 906, 910, 948
BstFNI	CGCG	4 cut(s)	308, 350, 596, 604
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	3 cut(s)	152, 308, 1036
BstMAI	GTCTC	8 cut(s)	333, 462, 1234, 1324, 1568, 1837, 1955, 2065
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 149, 588, 742, 848, 928, 952
BstNI	CCWGG	6 cut(s)	394, 1517, 1851, 1968, 2031, 2213
BstSCI	CCNGG	8 cut(s)	392, 1393, 1515, 1627, 1849, 1966, 2029, 2211
BstSFI	CTRYAG	2 cut(s)	1872, 1908
BstSLI	GKGCMC	2 cut(s)	159, 1811
BstUI	CGCG	4 cut(s)	308, 350, 596, 604
BstV1I	GCAGC	7 cut(s)	130, 298, 874, 1018, 1033, 1040, 1825
BstV2I	GAAGAC	1 cut(s)	1191
BstX2I	RGATCY	4 cut(s)	96, 298, 1938, 1970
BstYI	RGATCY	4 cut(s)	96, 298, 1938, 1970
BsuRI	GGCC	5 cut(s)	30, 269, 413, 448, 1520
BtgI	CCRYGG	3 cut(s)	938, 1945, 2052
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	6 cut(s)	46, 144, 520, 906, 910, 948
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	4 cut(s)	5, 1528, 1766, 1809
BtuMI	TCGCGA	1 cut(s)	604
BveI	ACCTGC	2 cut(s)	915, 1873
Cac8I	GCNNGC	6 cut(s)	12, 148, 450, 1026, 1093, 2189
CaiI	CAGNNNCTG	1 cut(s)	1031
CciI	TCATGA	2 cut(s)	1210, 1336
CfoI	GCGC	3 cut(s)	152, 308, 1036
Cfr10I	RCCGGY	2 cut(s)	10, 146
Cfr13I	GGNCC	6 cut(s)	446, 978, 1513, 1676, 1784, 2204
CseI	GACGC	1 cut(s)	441
CsiI	ACCWGGT	1 cut(s)	2211
Csp6I	GTAC	3 cut(s)	57, 995, 1391
CviQI	GTAC	3 cut(s)	57, 995, 1391
DdeI	CTNAG	5 cut(s)	295, 459, 732, 1080, 1834
DraIII	CACNNNGTG	1 cut(s)	2215
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EaeI	YGGCCR	2 cut(s)	28, 1518
Eam1104I	CTCTTC	1 cut(s)	1058
EarI	CTCTTC	1 cut(s)	1058
EciI	GGCGGA	2 cut(s)	29, 867
Ecl136II	GAGCTC	1 cut(s)	1797
Eco130I	CCWWGG	2 cut(s)	938, 2052
Eco24I	GRGCYC	2 cut(s)	467, 1799
Eco31I	GGTCTC	3 cut(s)	333, 1955, 2065
Eco32I	GATATC	1 cut(s)	2095
Eco47I	GGWCC	5 cut(s)	978, 1513, 1676, 1784, 2204
Eco53kI	GAGCTC	1 cut(s)	1797
Eco57I	CTGAAG	4 cut(s)	1296, 1722, 1833, 2010
Eco88I	CYCGRG	3 cut(s)	92, 1291, 2079
EcoICRI	GAGCTC	1 cut(s)	1797
EcoO109I	RGGNCCY	1 cut(s)	978
EcoRI	GAATTC	3 cut(s)	319, 436, 493
EcoRII	CCWGG	6 cut(s)	392, 1515, 1849, 1966, 2029, 2211
EcoRV	GATATC	1 cut(s)	2095
EcoT14I	CCWWGG	2 cut(s)	938, 2052
EcoT22I	ATGCAT	1 cut(s)	798
EcoT38I	GRGCYC	2 cut(s)	467, 1799
ErhI	CCWWGG	2 cut(s)	938, 2052
Esp3I	CGTCTC	1 cut(s)	462
FaqI	GGGAC	3 cut(s)	269, 964, 970
FauNDI	CATATG	1 cut(s)	1725
FbaI	TGATCA	1 cut(s)	2112
Fnu4HI	GCNGC	9 cut(s)	144, 309, 312, 651, 863, 1022, 1029, 1032, 1839
FokI	GGATG	6 cut(s)	33, 151, 527, 897, 913, 955
FriOI	GRGCYC	2 cut(s)	467, 1799
Fsp4HI	GCNGC	9 cut(s)	144, 309, 312, 651, 863, 1022, 1029, 1032, 1839
FspBI	CTAG	3 cut(s)	741, 1005, 1092
GlaI	GCGC	3 cut(s)	151, 307, 1035
GluI	GCNGC	9 cut(s)	144, 309, 312, 651, 863, 1022, 1029, 1032, 1839
GsaI	CCCAGC	2 cut(s)	306, 1021
GsuI	CTGGAG	1 cut(s)	1833
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	5 cut(s)	30, 269, 413, 448, 1520
HapII	CCGG	9 cut(s)	11, 27, 50, 147, 363, 410, 1394, 1628, 1974
HgaI	GACGC	1 cut(s)	441
HhaI	GCGC	3 cut(s)	152, 308, 1036
Hin1I	GRCGYC	1 cut(s)	2100
Hin6I	GCGC	3 cut(s)	150, 306, 1034
HinP1I	GCGC	3 cut(s)	150, 306, 1034
HincII	GTYRAC	2 cut(s)	1162, 1734
HindII	GTYRAC	2 cut(s)	1162, 1734
HindIII	AAGCTT	1 cut(s)	1475
HinfI	GANTC	5 cut(s)	86, 335, 488, 599, 1645
HpaI	GTTAAC	1 cut(s)	1162
HpaII	CCGG	9 cut(s)	11, 27, 50, 147, 363, 410, 1394, 1628, 1974
HphI	GGTGA	5 cut(s)	212, 796, 1165, 2102, 2201
Hpy166II	GTNNAC	7 cut(s)	487, 967, 1162, 1255, 1734, 1751, 1809
Hpy8I	GTNNAC	7 cut(s)	487, 967, 1162, 1255, 1734, 1751, 1809
Hpy99I	CGWCG	8 cut(s)	167, 239, 265, 293, 457, 587, 2102, 2105
HpyAV	CCTTC	9 cut(s)	241, 517, 581, 694, 1078, 1766, 1920, 1929, 1973
HpyCH4III	ACNGT	4 cut(s)	1058, 1259, 1761, 1898
HpyCH4IV	ACGT	2 cut(s)	1983, 2100
HpyCH4V	TGCA	9 cut(s)	796, 904, 910, 1420, 1756, 1781, 1809, 1868, 1874
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 149, 588, 742, 848, 928, 952
HpyF3I	CTNAG	5 cut(s)	295, 459, 732, 1080, 1834
HpySE526I	ACGT	2 cut(s)	1983, 2100
Hsp92I	GRCGYC	1 cut(s)	2100
HspAI	GCGC	3 cut(s)	150, 306, 1034
KflI	GGGWCCC	1 cut(s)	978
Kpn2I	TCCGGA	1 cut(s)	49
KpnI	GGTACC	1 cut(s)	998
KroI	GCCGGC	2 cut(s)	10, 146
KroNI	GCCGGC	2 cut(s)	12, 148
Ksp22I	TGATCA	1 cut(s)	2112
KspAI	GTTAAC	1 cut(s)	1162
LmnI	GCTCC	3 cut(s)	350, 769, 2196
Lsp1109I	GCAGC	7 cut(s)	130, 298, 874, 1018, 1033, 1040, 1825
LweI	GCATC	6 cut(s)	891, 918, 919, 933, 1280, 1877
MabI	ACCWGGT	1 cut(s)	2211
MaeI	CTAG	3 cut(s)	741, 1005, 1092
MaeII	ACGT	2 cut(s)	1983, 2100
MaeIII	GTNAC	7 cut(s)	87, 1380, 1984, 1999, 2124, 2173, 2215
MboII	GAAGA	6 cut(s)	583, 1075, 1191, 1289, 1325, 2003
MfeI	CAATTG	1 cut(s)	866
MflI	RGATCY	4 cut(s)	96, 298, 1938, 1970
MhlI	GDGCHC	6 cut(s)	159, 467, 733, 1799, 1811, 2193
MlsI	TGGCCA	1 cut(s)	1520
MluNI	TGGCCA	1 cut(s)	1520
MlyI	GAGTC	3 cut(s)	95, 482, 608
MmeI	TCCRAC	4 cut(s)	186, 243, 606, 1032
Mox20I	TGGCCA	1 cut(s)	1520
Mph1103I	ATGCAT	1 cut(s)	798
MroI	TCCGGA	1 cut(s)	49
MroNI	GCCGGC	2 cut(s)	10, 146
MscI	TGGCCA	1 cut(s)	1520
MseI	TTAA	2 cut(s)	528, 1161
MslI	CAYNNNNRTG	2 cut(s)	1814, 2182
Msp20I	TGGCCA	1 cut(s)	1520
MspA1I	CMGCKG	3 cut(s)	1031, 1742, 1838
MspI	CCGG	9 cut(s)	11, 27, 50, 147, 363, 410, 1394, 1628, 1974
MspR9I	CCNGG	8 cut(s)	394, 1395, 1517, 1629, 1851, 1968, 2031, 2213
MunI	CAATTG	1 cut(s)	866
Mva1269I	GAATGC	2 cut(s)	796, 853
MvaI	CCWGG	6 cut(s)	394, 1517, 1851, 1968, 2031, 2213
MvnI	CGCG	4 cut(s)	308, 350, 596, 604
MwoI	GCNNNNNNNGC	7 cut(s)	11, 149, 588, 742, 848, 928, 952
NaeI	GCCGGC	2 cut(s)	12, 148
NciI	CCSGG	2 cut(s)	1395, 1629
NcoI	CCATGG	2 cut(s)	938, 2052
NdeI	CATATG	1 cut(s)	1725
NgoMIV	GCCGGC	2 cut(s)	10, 146
NheI	GCTAGC	1 cut(s)	1091
NlaIV	GGNNCC	8 cut(s)	18, 98, 979, 980, 996, 1766, 1940, 1972
NmeAIII	GCCGAG	3 cut(s)	165, 295, 868
NmuCI	GTSAC	6 cut(s)	87, 1380, 1999, 2124, 2173, 2215
NruI	TCGCGA	1 cut(s)	604
NsiI	ATGCAT	1 cut(s)	798
OliI	CACNNNNGTG	1 cut(s)	1814
PaeR7I	CTCGAG	1 cut(s)	2079
PagI	TCATGA	2 cut(s)	1210, 1336
PaqCI	CACCTGC	1 cut(s)	915
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	2 cut(s)	796, 853
PdiI	GCCGGC	2 cut(s)	12, 148
PfeI	GAWTC	2 cut(s)	335, 1645
PfoI	TCCNGGA	2 cut(s)	1849, 1966
PkrI	GCNGC	9 cut(s)	145, 310, 313, 652, 864, 1023, 1030, 1033, 1840
PleI	GAGTC	3 cut(s)	94, 482, 607
PpsI	GAGTC	3 cut(s)	94, 482, 607
PpuMI	RGGWCCY	1 cut(s)	978
Psp124BI	GAGCTC	1 cut(s)	1799
Psp5II	RGGWCCY	1 cut(s)	978
Psp6I	CCWGG	6 cut(s)	392, 1515, 1849, 1966, 2029, 2211
PspFI	CCCAGC	2 cut(s)	302, 1017
PspGI	CCWGG	6 cut(s)	392, 1515, 1849, 1966, 2029, 2211
PspN4I	GGNNCC	8 cut(s)	18, 98, 979, 980, 996, 1766, 1940, 1972
PspPI	GGNCC	6 cut(s)	446, 978, 1513, 1676, 1784, 2204
PspPPI	RGGWCCY	1 cut(s)	978
PstI	CTGCAG	1 cut(s)	1876
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	4 cut(s)	96, 298, 1938, 1970
PvuII	CAGCTG	3 cut(s)	1031, 1742, 1838
RruI	TCGCGA	1 cut(s)	604
RsaI	GTAC	3 cut(s)	58, 996, 1392
RsaNI	GTAC	3 cut(s)	57, 995, 1391
RseI	CAYNNNNRTG	2 cut(s)	1814, 2182
SacI	GAGCTC	1 cut(s)	1799
SaqAI	TTAA	2 cut(s)	528, 1161
SatI	GCNGC	9 cut(s)	144, 309, 312, 651, 863, 1022, 1029, 1032, 1839
Sau96I	GGNCC	6 cut(s)	446, 978, 1513, 1676, 1784, 2204
SchI	GAGTC	3 cut(s)	95, 482, 608
ScrFI	CCNGG	8 cut(s)	394, 1395, 1517, 1629, 1851, 1968, 2031, 2213
SduI	GDGCHC	6 cut(s)	159, 467, 733, 1799, 1811, 2193
SexAI	ACCWGGT	1 cut(s)	2211
SfaNI	GCATC	6 cut(s)	891, 918, 919, 933, 1280, 1877
SfcI	CTRYAG	2 cut(s)	1872, 1908
Sfr274I	CTCGAG	1 cut(s)	2079
SinI	GGWCC	5 cut(s)	978, 1513, 1676, 1784, 2204
SlaI	CTCGAG	1 cut(s)	2079
SmiMI	CAYNNNNRTG	2 cut(s)	1814, 2182
SmlI	CTYRAG	2 cut(s)	773, 2079
SmoI	CTYRAG	2 cut(s)	773, 2079
SsiI	CCGC	9 cut(s)	14, 20, 308, 348, 482, 596, 651, 878, 884
SspI	AATATT	1 cut(s)	1426
SspMI	CTAG	3 cut(s)	741, 1005, 1092
SstI	GAGCTC	1 cut(s)	1799
StyD4I	CCNGG	8 cut(s)	392, 1393, 1515, 1627, 1849, 1966, 2029, 2211
StyI	CCWWGG	2 cut(s)	938, 2052
TaaI	ACNGT	4 cut(s)	1058, 1259, 1761, 1898
TaiI	ACGT	2 cut(s)	1986, 2103
TaqII	GACCGA	1 cut(s)	1501
TauI	GCSGC	2 cut(s)	311, 653
TfiI	GAWTC	2 cut(s)	335, 1645
Tru1I	TTAA	2 cut(s)	528, 1161
Tru9I	TTAA	2 cut(s)	528, 1161
TscAI	CASTG	4 cut(s)	12, 1528, 1766, 1816
TseFI	GTSAC	6 cut(s)	87, 1380, 1999, 2124, 2173, 2215
TseI	GCWGC	7 cut(s)	143, 311, 862, 1021, 1028, 1031, 1838
Tsp45I	GTSAC	6 cut(s)	87, 1380, 1999, 2124, 2173, 2215
TspDTI	ATGAA	6 cut(s)	163, 1199, 1325, 1419, 1637, 1742
TspGWI	ACGGA	4 cut(s)	730, 1506, 1757, 1934
TspRI	CASTG	4 cut(s)	12, 1528, 1766, 1816
VneI	GTGCAC	1 cut(s)	1807
VpaK11BI	GGWCC	5 cut(s)	978, 1513, 1676, 1784, 2204
XapI	RAATTY	9 cut(s)	68, 116, 319, 436, 493, 1310, 1329, 1406, 2136
XhoI	CTCGAG	1 cut(s)	2079
XspI	CTAG	3 cut(s)	741, 1005, 1092
ZraI	GACGTC	1 cut(s)	2101
Zsp2I	ATGCAT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.