Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011890

Physical Location & Seq

Genomic Coordinates Forward (+)

1327475 .. 1328636

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTTCATCGTTGTTCCCTCACGATCCCTCCTCTCAACCCTGAATTTTTCTCATCTGACAACAGCATGGTCACTGTCGTTGTGCCCTCCGACAACTTCGAGCTCACCTTCGACGACTTGGACGACCTCTACCTGCCATCGGTGGCCGAGGATTTCCTCATCCCTGACGGCTTAGATTTCAGCGCGATTGCGTCGCATTCGGGGTCTTTTGAATTGGGAGCTCCGCAGTTTCGGTTTCTAGCGTTGATAAGGGACCAGGAGAGAAAGAAGAAGAAAAATAATGGGTGTGGGTTTCAGGCTTTCGGCCGCACTCTTCTCTCTCCTCTTCTCTGCTTTAATTTGAAAAAACAAAAATGGCTGCTTTGCGTCTCGGCGACGGATGCATTGGCTTCTCCACTCGGTGATGAGTCGCTCTTCCGAGAGGTTCGCAGGTTTCTTTGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0006972 GO:0006986 GO:0006990 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901522 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

149

Amino Acids

16.69

Weight (kDa)

5.11

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40950 AT3G56660
fragaria_vesca	FvH4_4g26350
malus_domestica	MD07G1018800.v1.1
prunus_persica	Prupe.2G020400_v2.0.a1
pyrus_communis	pycom02g25650 pycom07g01490 pycom11g01510
rosa_chinensis	RchiOBHm_Chr4g0433931
rosa_laevigata	RLG00000006716
rosa_multiflora	Rmu_sc0000352.1_g000015 Rmu_sc0004983.1_g000009 Rmu_sc0023229.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375350
rosa_samantha	Rh4AG327400 Rh4BG334700 Rh4CG350500 Rh4DG331600
rosa_wichuraiana	Rw4G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	141, 420
AccII	CGCG	1 cut(s)	185
AciI	CCGC	2 cut(s)	224, 307
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	2 cut(s)	144, 304
AcsI	RAATTY	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	212, 343
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	103, 221
AluI	AGCT	2 cut(s)	103, 221
Alw21I	GWGCWC	2 cut(s)	105, 223
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	144, 304
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	97, 413
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	87
BanII	GRGCYC	2 cut(s)	105, 223
Bbv12I	GWGCWC	2 cut(s)	105, 223
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	239
BfuAI	ACCTGC	2 cut(s)	141, 420
BisI	GCNGC	2 cut(s)	307, 359
BlsI	GCNGC	2 cut(s)	308, 360
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	159, 385
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	21, 312
BseSI	GKGCMC	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	146, 306
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	105, 223
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	373
BsmBI	CGTCTC	1 cut(s)	373
BsmFI	GGGAC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	146, 306
Bsp1286I	GDGCHC	3 cut(s)	87, 105, 223
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	224, 307
BspANI	GGCC	2 cut(s)	146, 306
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	254
BspMI	ACCTGC	2 cut(s)	141, 420
BspPI	GGATC	1 cut(s)	19
BspQI	GCTCTTC	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	3 cut(s)	318, 330, 419
BstDEI	CTNAG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	159, 385
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	24
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	345
BstZI	CGGCCG	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	146, 306
BtsCI	GGATG	2 cut(s)	159, 385
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	2 cut(s)	141, 420
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	253
CseI	GACGC	2 cut(s)	180, 355
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	8 cut(s)	103, 146, 171, 221, 299, 306, 358, 389
CviKI_1	RGCY	8 cut(s)	103, 146, 171, 221, 299, 306, 358, 389
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	2 cut(s)	144, 304
EagI	CGGCCG	1 cut(s)	304
Eam1104I	CTCTTC	3 cut(s)	318, 330, 419
EarI	CTCTTC	3 cut(s)	318, 330, 419
Ecl136II	GAGCTC	2 cut(s)	103, 221
EclXI	CGGCCG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	105, 223
Eco47I	GGWCC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	304
Eco53kI	GAGCTC	2 cut(s)	103, 221
EcoICRI	GAGCTC	2 cut(s)	103, 221
EcoRII	CCWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	2 cut(s)	105, 223
Esp3I	CGTCTC	1 cut(s)	373
FaeI	CATG	1 cut(s)	70
FaiI	YATR	1 cut(s)	68
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	307, 359
FokI	GGATG	2 cut(s)	146, 392
FriOI	GRGCYC	2 cut(s)	105, 223
Fsp4HI	GCNGC	2 cut(s)	307, 359
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	307, 359
HaeIII	GGCC	2 cut(s)	146, 306
HgaI	GACGC	2 cut(s)	180, 355
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	407
HphI	GGTGA	2 cut(s)	97, 413
Hpy188I	TCNGA	3 cut(s)	58, 91, 419
Hpy188III	TCNNGA	1 cut(s)	22
Hpy99I	CGWCG	3 cut(s)	116, 196, 379
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	24
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	2 cut(s)	218, 226
LpnPI	CCDG	7 cut(s)	54, 146, 177, 242, 269, 281, 415
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	5 cut(s)	280, 283, 305, 317, 406
MhlI	GDGCHC	3 cut(s)	87, 105, 223
MluCI	AATT	4 cut(s)	44, 212, 337, 442
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	9 cut(s)	29, 39, 42, 97, 137, 142, 167, 333, 415
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	2 cut(s)	336, 445
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	254
NmeAIII	GCCGAG	2 cut(s)	172, 350
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	308, 360
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp124BI	GAGCTC	2 cut(s)	105, 223
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	253
SacI	GAGCTC	2 cut(s)	105, 223
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	336, 445
SatI	GCNGC	2 cut(s)	307, 359
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	3 cut(s)	87, 105, 223
SetI	ASST	7 cut(s)	105, 110, 129, 135, 223, 426, 434
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	4 cut(s)	44, 212, 337, 442
SsiI	CCGC	2 cut(s)	224, 307
SspMI	CTAG	1 cut(s)	239
SstI	GAGCTC	2 cut(s)	105, 223
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	99, 111
TasI	AATT	4 cut(s)	44, 212, 337, 442
TauI	GCSGC	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	336, 445
Tru9I	TTAA	2 cut(s)	336, 445
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	44
XspI	CTAG	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.