Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011890

Physical Location & Seq

Genomic Coordinates Forward (+)

56168113 .. 56174053

Gene Structure 5941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGAAGACTCAGTCGTCGCCGAACCGCTGATACTCCCTCCAGATCTGACCCGTAACGCTACCAATTCCGGCGAGGATTTCGAGTCCCTTCCGATCCCTCCTCTCGATCCTCAATTCTTCTCATCTGACACCGGTATGCCCTCCGATTCCTTCATCTCGGATCTCGGGTTCGGGTTCGGCTCCGACGACAATTGCGATTACGAGCTCACCTTTGATGATTTGGACAATCTCTACCTCCCGTCGGAGGCCGACGACTTCCTCATCCCCGACGGGTTTGATCCGACGGCTCAGCCGAGCGGTGATTCCACTCTTCTGTTGGATTCGGAGTCTCCGGAGTCCGGAATTTCCAAGGGCTCCTCGGATGGCGTGGTCTCCGGTTTCCTGAATTATCCGTCGTCGGAGTCCGGCGGCCAAGATCAGGAGTTTTCGGAGAATTCCGGCGGGCCGTTGTCGTCTCAGGGCTCCGGGATTCCCGAGGCGGGCAATTCTCCTACTCATTCCGGCAACTCCGATCGCGACGTGTCGTCGAACGTCACTACTGCCGATGAGAAGGTGAAGATAGAGGAGGAGATGACCAGAAACGGCTTCGTTGCGAAGAGGAAGAAAGAGAGCGGCGAAGAAGAAGGGAACGTGGAGTCGAGAAGCTCCAAGTATCGGAGGTCGGAGAGTGGCTTGAACGATGAAGATGAGAAGAGGAAGGCCAGATTGATGAGGAACAGAGAGAGTGCTCAGCTTTCGAGGCAGAGGAAGAAGCATTATGTGGAAGAGCTTGAAGATAAGGTAAGGGCTATGCATACAACTATAGCTGATTTGAATAATAAGATTTCATATATTATGGCCGAGAATGCTACTCTGAAGCAGCAGTTGAGCAGTGGTAGTGGCATGTGCCCACCGCCGCAGCCGCCGCCTCCGGGGATGTACCCAATGCCACCCATGGGTTATCCATGGATGCCATACTCACCTTATGTTGTGAAACCGCAAGGTTCGCAGGTCCCTTTGGTTCCCATACCTAGGCTTAAACCCCAGCAGCCTGTGGCTGCGCCAAAGCCGAAGAAGAAGTCGGAGAGTAAGACCAAGAAGGTTGCTAGCATTAGTTTCCTGGGTCTGCTGTTTTTCCTGTTACTTTTTGGTGGACTTGTTCCCATGGTGAATGTTGGTTTTGGTGGGTCGAATTATGTTAGAGATAGGTTTTATGATCAGCAGAGGGCGAAGGTTTTGACGGTTGAGGGTCATTTGAATGGATCAGAGGGAAATATACCTTTAGGAGTATCTGGTGGGAAATTTGATGTCTCTAACAAAATTCATGAGAGGGGTCATAAGCAGAAAGAACAGGGGTTACCTGGCGTGGGTAATGCTAGTGAGCCTCTTGTTGCCTCTTTGTATGTTCCGAGAAATGATAAACTTGTTAAGATTGATGGGAACTTGATTATTCATTCAGTCCTGGCCAGTGAGAAAGCTAAAACTCATAAGAAGAGTAGGGAGGCCAGAGTGGAAGGAGCTAAAGATTTGGTTTCAGCATTGGCTATACCTGAAGCTGGAGTGAACAGAGGGAGACGTGCTCCTTTATACAGAACTCCTGCTGGACAACAGAAGGCTCTTACAGCTGGTTCTGCTGATGGTAAACTGCAGCAGTGGTTTCGTGAAGGTCTTGCTGGACCGTTGTTGAGTTCAGGCATGTGCACTGAAGTGTTCCAGTTTGATATATCAGCTGCTACTCATTCAGGAGGTATAATTCCTGCCTCGTCAGTTGCCAATGTTTCTCAACACAGTTCAAATTCTGCAAGGCTTAACAGGGGAGGAAACAGAAGGATCCTTGGTGGTCGTGCAATTCCCCTTGCTGGATCCAATCATAATGTTACTGATGAAGAACGCGCCATAAGAAACAATCAGTCGAGCAACAACTTTCAAGGCAACTTTCAAGGCAGTAATTCTTCCATGGTCGTTTCTGTTCTGGTTGATCCTAGAGAGGCAGGTGACATTGACGTTGATGGCATGATCAAACCCAAGTCACTTTCTCGGGTTTTCGTTGTTCTGCTTCTAGACAGTGTGAAGTATGTCACTTACTCATGTGTGCTTCCTCGCACTGCTCCTCACTTAGTGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0006972 GO:0006986 GO:0006990 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901522 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

702

Amino Acids

75.79

Weight (kDa)

5.86

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	230 - 289	2.7e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40950 AT3G56660
fragaria_vesca	FvH4_4g26350
malus_domestica	MD07G1018800.v1.1
prunus_persica	Prupe.2G020400_v2.0.a1
pyrus_communis	pycom02g25650 pycom07g01490 pycom11g01510
rosa_chinensis	RchiOBHm_Chr4g0433931
rosa_laevigata	RLG00000006716
rosa_multiflora	Rmu_sc0000352.1_g000015 Rmu_sc0004983.1_g000009 Rmu_sc0023229.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375350
rosa_samantha	Rh4AG327400 Rh4BG334700 Rh4CG350500 Rh4DG331600
rosa_wichuraiana	Rw4G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1961
AasI	GACNNNNNNGTC	1 cut(s)	14
Acc36I	ACCTGC	2 cut(s)	979, 1961
AccBSI	CCGCTC	2 cut(s)	297, 612
AccII	CGCG	2 cut(s)	516, 1872
AccIII	TCCGGA	2 cut(s)	331, 338
AcoI	YGGCCR	3 cut(s)	409, 837, 1443
AcsI	RAATTY	5 cut(s)	342, 433, 1280, 1299, 1774
AcuI	CTGAAG	3 cut(s)	875, 1551, 1704
AdeI	CACNNNGTG	1 cut(s)	2098
AfaI	GTAC	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	519
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	7 cut(s)	676, 773, 814, 1237, 1773, 1907, 1919
AhdI	GACNNNNNGTC	1 cut(s)	523
AjiI	CACGTC	2 cut(s)	520, 1556
AjnI	CCWGG	3 cut(s)	1098, 1339, 1440
AleI	CACNNNNGTG	1 cut(s)	1685
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
Alw21I	GWGCWC	4 cut(s)	207, 730, 1561, 1682
Alw26I	GTCTC	5 cut(s)	333, 376, 459, 1294, 1546
Alw44I	GTGCAC	1 cut(s)	1678
Ama87I	CYCGRG	3 cut(s)	164, 473, 2016
Aor13HI	TCCGGA	2 cut(s)	331, 338
AoxI	GGCC	7 cut(s)	246, 409, 443, 699, 837, 1443, 1482
ApaLI	GTGCAC	1 cut(s)	1678
ApeKI	GCWGC	6 cut(s)	859, 898, 1027, 1037, 1627, 1709
ApoI	RAATTY	5 cut(s)	342, 433, 1280, 1299, 1774
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AsiGI	ACCGGT	1 cut(s)	131
AspA2I	CCTAGG	1 cut(s)	1010
AspLEI	GCGC	2 cut(s)	1042, 1874
AspS9I	GGNCC	3 cut(s)	443, 991, 1655
AsuC2I	CCSGG	2 cut(s)	466, 912
AsuHPI	GGTGA	6 cut(s)	199, 311, 565, 951, 1159, 1985
AsuNHI	GCTAGC	1 cut(s)	1085
AvaI	CYCGRG	3 cut(s)	164, 473, 2016
AvaII	GGWCC	2 cut(s)	991, 1655
AvrII	CCTAGG	1 cut(s)	1010
BaeGI	GKGCMC	2 cut(s)	890, 1682
BalI	TGGCCA	1 cut(s)	1445
BamHI	GGATCC	2 cut(s)	1809, 1841
BanII	GRGCYC	3 cut(s)	207, 356, 464
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	4 cut(s)	207, 730, 1561, 1682
BbvI	GCAGC	6 cut(s)	871, 910, 1024, 1039, 1639, 1696
BccI	CCATC	4 cut(s)	356, 1409, 1610, 1982
BceAI	ACGGC	3 cut(s)	300, 430, 598
BcgI	CGANNNNNNTGC	2 cut(s)	1619, 1653
BciT130I	CCWGG	3 cut(s)	1100, 1341, 1442
BclI	TGATCA	2 cut(s)	1195, 1995
BcnI	CCSGG	2 cut(s)	466, 912
BcoDI	GTCTC	5 cut(s)	333, 376, 459, 1294, 1546
BfaI	CTAG	5 cut(s)	1011, 1086, 1356, 1962, 2039
BfmI	CTRYAG	2 cut(s)	801, 1625
BfuAI	ACCTGC	2 cut(s)	979, 1961
BglII	AGATCT	1 cut(s)	43
BlnI	CCTAGG	1 cut(s)	1010
BlpI	GCTNAGC	2 cut(s)	288, 729
Bme1390I	CCNGG	5 cut(s)	466, 912, 1100, 1341, 1442
Bme18I	GGWCC	2 cut(s)	991, 1655
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmeT110I	CYCGRG	3 cut(s)	164, 473, 2016
BmgBI	CACGTC	2 cut(s)	520, 1556
BmgT120I	GGNCC	3 cut(s)	443, 991, 1655
BmiI	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1811, 1843
BmrFI	CCNGG	5 cut(s)	466, 912, 1100, 1341, 1442
BmsI	GCATC	1 cut(s)	939
BmtI	GCTAGC	1 cut(s)	1089
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	1543, 1575
BpmI	CTGGAG	2 cut(s)	24, 1557
Bpu1102I	GCTNAGC	2 cut(s)	288, 729
BpuMI	CCSGG	2 cut(s)	466, 912
BsaI	GGTCTC	1 cut(s)	376
BsaWI	WCCGGW	4 cut(s)	131, 331, 338, 374
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	1446, 1693
BseAI	TCCGGA	2 cut(s)	331, 338
BseBI	CCWGG	3 cut(s)	1100, 1341, 1442
BseGI	GGATG	4 cut(s)	261, 367, 921, 954
BseMII	CTCAG	4 cut(s)	24, 302, 470, 743
BseNI	ACTGG	2 cut(s)	1446, 1693
BseRI	GAGGAG	5 cut(s)	90, 346, 578, 581, 2079
BseSI	GKGCMC	2 cut(s)	890, 1682
BseXI	GCAGC	6 cut(s)	871, 910, 1024, 1039, 1639, 1696
BseYI	CCCAGC	1 cut(s)	1023
Bsh1236I	CGCG	2 cut(s)	516, 1872
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1445, 1484
BshTI	ACCGGT	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	514
BsiHKAI	GWGCWC	4 cut(s)	207, 730, 1561, 1682
BsiHKCI	CYCGRG	3 cut(s)	164, 473, 2016
BslFI	GGGAC	2 cut(s)	70, 977
BsmAI	GTCTC	5 cut(s)	333, 376, 459, 1294, 1546
BsmBI	CGTCTC	2 cut(s)	459, 1546
BsmFI	GGGAC	2 cut(s)	70, 977
BsmI	GAATGC	1 cut(s)	850
BsnI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1445, 1484
Bso31I	GGTCTC	1 cut(s)	376
BsoBI	CYCGRG	3 cut(s)	164, 473, 2016
Bsp1286I	GDGCHC	7 cut(s)	207, 356, 464, 730, 890, 1561, 1682
Bsp13I	TCCGGA	2 cut(s)	331, 338
Bsp1720I	GCTNAGC	2 cut(s)	288, 729
Bsp19I	CCATGG	4 cut(s)	933, 944, 1143, 1935
Bsp68I	TCGCGA	1 cut(s)	516
BspANI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1445, 1484
BspCNI	CTCAG	4 cut(s)	23, 301, 469, 742
BspEI	TCCGGA	2 cut(s)	331, 338
BspFNI	CGCG	2 cut(s)	516, 1872
BspHI	TCATGA	1 cut(s)	1303
BspLI	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1811, 1843
BspMAI	CTGCAG	1 cut(s)	1629
BspMI	ACCTGC	2 cut(s)	979, 1961
BspOI	GCTAGC	1 cut(s)	1089
BspQI	GCTCTTC	1 cut(s)	759
BspTNI	GGTCTC	1 cut(s)	376
BsrBI	CCGCTC	2 cut(s)	297, 612
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	1446, 1693
BssAI	RCCGGY	1 cut(s)	131
BssT1I	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1813, 1935
Bst2UI	CCWGG	3 cut(s)	1100, 1341, 1442
Bst4CI	ACNGT	4 cut(s)	1222, 1659, 1769, 2045
Bst6I	CTCTTC	5 cut(s)	315, 590, 686, 759, 1466
BstC8I	GCNNGC	3 cut(s)	443, 481, 1087
BstDEI	CTNAG	5 cut(s)	10, 288, 456, 729, 2095
BstDSI	CCRYGG	4 cut(s)	933, 944, 1143, 1935
BstEII	GGTNACC	1 cut(s)	1335
BstF5I	GGATG	4 cut(s)	261, 367, 921, 954
BstFNI	CGCG	2 cut(s)	516, 1872
BstHHI	GCGC	2 cut(s)	1042, 1874
BstMAI	GTCTC	5 cut(s)	333, 376, 459, 1294, 1546
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	7 cut(s)	739, 845, 901, 904, 985, 1601, 1610
BstNI	CCWGG	3 cut(s)	1100, 1341, 1442
BstNSI	RCATGY	2 cut(s)	886, 1678
BstPI	GGTNACC	1 cut(s)	1335
BstSCI	CCNGG	5 cut(s)	464, 910, 1098, 1339, 1440
BstSFI	CTRYAG	2 cut(s)	801, 1625
BstSLI	GKGCMC	2 cut(s)	890, 1682
BstUI	CGCG	2 cut(s)	516, 1872
BstV1I	GCAGC	6 cut(s)	871, 910, 1024, 1039, 1639, 1696
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	4 cut(s)	43, 160, 1809, 1841
BstYI	RGATCY	4 cut(s)	43, 160, 1809, 1841
BsuRI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1445, 1484
BtgI	CCRYGG	4 cut(s)	933, 944, 1143, 1935
BtrI	CACGTC	2 cut(s)	520, 1556
BtsCI	GGATG	4 cut(s)	261, 367, 921, 954
BtsI	GCAGTG	3 cut(s)	877, 1637, 2082
BtsIMutI	CAGTG	6 cut(s)	877, 1453, 1637, 1680, 2050, 2082
BtuMI	TCGCGA	1 cut(s)	516
BveI	ACCTGC	2 cut(s)	979, 1961
Cac8I	GCNNGC	3 cut(s)	443, 481, 1087
CciI	TCATGA	1 cut(s)	1303
CfoI	GCGC	2 cut(s)	1042, 1874
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	443, 991, 1655
Csp6I	GTAC	1 cut(s)	919
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	9 cut(s)	883, 934, 945, 1144, 1304, 1675, 1936, 1993, 2067
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	5 cut(s)	10, 288, 456, 729, 2095
DraIII	CACNNNGTG	1 cut(s)	2098
DrdI	GACNNNNNNGTC	1 cut(s)	14
DriI	GACNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	3 cut(s)	409, 837, 1443
Eam1104I	CTCTTC	5 cut(s)	315, 590, 686, 759, 1466
Eam1105I	GACNNNNNGTC	1 cut(s)	523
EarI	CTCTTC	5 cut(s)	315, 590, 686, 759, 1466
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1813, 1935
Eco24I	GRGCYC	3 cut(s)	207, 356, 464
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	991, 1655
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	3 cut(s)	875, 1551, 1704
Eco88I	CYCGRG	3 cut(s)	164, 473, 2016
Eco91I	GGTNACC	1 cut(s)	1335
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	991
EcoO65I	GGTNACC	1 cut(s)	1335
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	1098, 1339, 1440
EcoT14I	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1813, 1935
EcoT22I	ATGCAT	1 cut(s)	795
EcoT38I	GRGCYC	3 cut(s)	207, 356, 464
ErhI	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1813, 1935
Esp3I	CGTCTC	2 cut(s)	459, 1546
FaeI	CATG	9 cut(s)	886, 937, 948, 1147, 1307, 1678, 1939, 1996, 2070
FaqI	GGGAC	2 cut(s)	70, 977
FatI	CATG	9 cut(s)	882, 933, 944, 1143, 1303, 1674, 1935, 1992, 2066
FauI	CCCGC	2 cut(s)	434, 472
FbaI	TGATCA	2 cut(s)	1195, 1995
FokI	GGATG	4 cut(s)	248, 374, 928, 961
FriOI	GRGCYC	3 cut(s)	207, 356, 464
FspBI	CTAG	5 cut(s)	1011, 1086, 1356, 1962, 2039
GlaI	GCGC	2 cut(s)	1041, 1873
GsaI	CCCAGC	1 cut(s)	1027
GsuI	CTGGAG	2 cut(s)	24, 1557
HaeIII	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1445, 1484
HhaI	GCGC	2 cut(s)	1042, 1874
Hin1II	CATG	9 cut(s)	886, 937, 948, 1147, 1307, 1678, 1939, 1996, 2070
Hin6I	GCGC	2 cut(s)	1040, 1872
HinP1I	GCGC	2 cut(s)	1040, 1872
HphI	GGTGA	6 cut(s)	199, 311, 565, 951, 1159, 1985
Hpy166II	GTNNAC	4 cut(s)	1133, 1543, 1622, 1680
Hpy8I	GTNNAC	4 cut(s)	1133, 1543, 1622, 1680
HpyCH4III	ACNGT	4 cut(s)	1222, 1659, 1769, 2045
HpyCH4IV	ACGT	5 cut(s)	519, 531, 630, 1555, 1983
HpyCH4V	TGCA	5 cut(s)	793, 1627, 1680, 1781, 1826
HpyF10VI	GCNNNNNNNGC	7 cut(s)	739, 845, 901, 904, 985, 1601, 1610
HpyF3I	CTNAG	5 cut(s)	10, 288, 456, 729, 2095
HpySE526I	ACGT	5 cut(s)	519, 531, 630, 1555, 1983
Hsp92II	CATG	9 cut(s)	886, 937, 948, 1147, 1307, 1678, 1939, 1996, 2070
HspAI	GCGC	2 cut(s)	1040, 1872
Kpn2I	TCCGGA	2 cut(s)	331, 338
Ksp22I	TGATCA	2 cut(s)	1195, 1995
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	7 cut(s)	185, 359, 467, 650, 1496, 1564, 2092
Lsp1109I	GCAGC	6 cut(s)	871, 910, 1024, 1039, 1639, 1696
LweI	GCATC	1 cut(s)	939
MaeI	CTAG	5 cut(s)	1011, 1086, 1356, 1962, 2039
MaeII	ACGT	5 cut(s)	519, 531, 630, 1555, 1983
MaeIII	GTNAC	9 cut(s)	53, 532, 1119, 1335, 1855, 1973, 2007, 2056, 2098
MbiI	CCGCTC	2 cut(s)	297, 612
MfeI	CAATTG	1 cut(s)	190
MflI	RGATCY	4 cut(s)	43, 160, 1809, 1841
MhlI	GDGCHC	7 cut(s)	207, 356, 464, 730, 890, 1561, 1682
MlsI	TGGCCA	1 cut(s)	1445
MluNI	TGGCCA	1 cut(s)	1445
MlyI	GAGTC	6 cut(s)	2, 92, 335, 344, 410, 644
MmeI	TCCRAC	7 cut(s)	207, 222, 297, 305, 378, 642, 1041
Mox20I	TGGCCA	1 cut(s)	1445
Mph1103I	ATGCAT	1 cut(s)	795
MroI	TCCGGA	2 cut(s)	331, 338
MscI	TGGCCA	1 cut(s)	1445
MseI	TTAA	4 cut(s)	1017, 1407, 1788, 2107
MslI	CAYNNNNRTG	3 cut(s)	134, 1236, 1685
Msp20I	TGGCCA	1 cut(s)	1445
MspA1I	CMGCKG	3 cut(s)	28, 1604, 1709
MspR9I	CCNGG	5 cut(s)	466, 912, 1100, 1341, 1442
MunI	CAATTG	1 cut(s)	190
Mva1269I	GAATGC	1 cut(s)	850
MvaI	CCWGG	3 cut(s)	1100, 1341, 1442
MvnI	CGCG	2 cut(s)	516, 1872
MwoI	GCNNNNNNNGC	7 cut(s)	739, 845, 901, 904, 985, 1601, 1610
NciI	CCSGG	2 cut(s)	466, 912
NcoI	CCATGG	4 cut(s)	933, 944, 1143, 1935
NheI	GCTAGC	1 cut(s)	1085
NlaIII	CATG	9 cut(s)	886, 937, 948, 1147, 1307, 1678, 1939, 1996, 2070
NlaIV	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1811, 1843
NmeAIII	GCCGAG	2 cut(s)	318, 865
NmuCI	GTSAC	5 cut(s)	532, 1973, 2007, 2056, 2098
NruI	TCGCGA	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	2 cut(s)	886, 1678
OliI	CACNNNNGTG	1 cut(s)	1685
PagI	TCATGA	1 cut(s)	1303
PaqCI	CACCTGC	1 cut(s)	1961
PciSI	GCTCTTC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	3 cut(s)	183, 192, 290
PctI	GAATGC	1 cut(s)	850
PfeI	GAWTC	4 cut(s)	146, 302, 320, 469
PflFI	GACNNNGTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	464
PinAI	ACCGGT	1 cut(s)	131
Ple19I	CGATCG	1 cut(s)	514
PleI	GAGTC	6 cut(s)	2, 91, 334, 343, 409, 643
PpsI	GAGTC	6 cut(s)	2, 91, 334, 343, 409, 643
PpuMI	RGGWCCY	1 cut(s)	991
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	991
Psp6I	CCWGG	3 cut(s)	1098, 1339, 1440
PspEI	GGTNACC	1 cut(s)	1335
PspFI	CCCAGC	1 cut(s)	1023
PspGI	CCWGG	3 cut(s)	1098, 1339, 1440
PspN4I	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1811, 1843
PspPI	GGNCC	3 cut(s)	443, 991, 1655
PspPPI	RGGWCCY	1 cut(s)	991
PsrI	GAACNNNNNNTAC	4 cut(s)	15, 47, 1320, 1352
PstI	CTGCAG	1 cut(s)	1629
PsuI	RGATCY	4 cut(s)	43, 160, 1809, 1841
PsyI	GACNNNGTC	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	514
PvuII	CAGCTG	2 cut(s)	1604, 1709
RruI	TCGCGA	1 cut(s)	516
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	3 cut(s)	134, 1236, 1685
SacI	GAGCTC	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	1017, 1407, 1788, 2107
Sau96I	GGNCC	3 cut(s)	443, 991, 1655
SchI	GAGTC	6 cut(s)	2, 92, 335, 344, 410, 644
ScrFI	CCNGG	5 cut(s)	466, 912, 1100, 1341, 1442
SduI	GDGCHC	7 cut(s)	207, 356, 464, 730, 890, 1561, 1682
SfaNI	GCATC	1 cut(s)	939
SfcI	CTRYAG	2 cut(s)	801, 1625
SinI	GGWCC	2 cut(s)	991, 1655
SmiMI	CAYNNNNRTG	3 cut(s)	134, 1236, 1685
SspMI	CTAG	5 cut(s)	1011, 1086, 1356, 1962, 2039
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	5 cut(s)	464, 910, 1098, 1339, 1440
StyI	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1813, 1935
TaaI	ACNGT	4 cut(s)	1222, 1659, 1769, 2045
TaiI	ACGT	5 cut(s)	522, 534, 633, 1558, 1986
TaqI	TCGA	7 cut(s)	81, 105, 527, 638, 737, 1169, 1892
TauI	GCSGC	5 cut(s)	411, 615, 898, 904, 907
TfiI	GAWTC	4 cut(s)	146, 302, 320, 469
Tru1I	TTAA	4 cut(s)	1017, 1407, 1788, 2107
Tru9I	TTAA	4 cut(s)	1017, 1407, 1788, 2107
TscAI	CASTG	6 cut(s)	877, 1453, 1637, 1687, 2050, 2089
TseFI	GTSAC	5 cut(s)	532, 1973, 2007, 2056, 2098
TseI	GCWGC	6 cut(s)	859, 898, 1027, 1037, 1627, 1709
Tsp45I	GTSAC	5 cut(s)	532, 1973, 2007, 2056, 2098
TspDTI	ATGAA	6 cut(s)	142, 696, 816, 1292, 1421, 1878
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	6 cut(s)	877, 1453, 1637, 1687, 2050, 2089
Tth111I	GACNNNGTC	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	1678
VpaK11BI	GGWCC	2 cut(s)	991, 1655
XapI	RAATTY	5 cut(s)	342, 433, 1280, 1299, 1774
XbaI	TCTAGA	1 cut(s)	2038
XceI	RCATGY	2 cut(s)	886, 1678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmaJI	CCTAGG	1 cut(s)	1010
XspI	CTAG	5 cut(s)	1011, 1086, 1356, 1962, 2039
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.