Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011890

Physical Location & Seq

Genomic Coordinates Forward (+)

60766855 .. 60768942

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG350500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGGAAGACTCAGTCGTCGCCGAACCGCCGATACTCCCTCCAGATCTGACCCGTAACGCTACCAATTCCGGCGAGGACTTCGAGTCCCTTCCGATCCCTCCTCTCGATCCTCAATTCTTCTCATCTGACACCGGAATGCCCTCCGATTCCTTCATGTCGGATCTCGGGTTCGGTTTCGGCTCCGAAGACAGTTGCGATTACGAGCTCACCTTTGATGATTTGGACAATCTCTACCTCCCGTCGGAGGCCGACGACTTCCTCATCCCCGACGGGTTTGATCCGACGGCTCAGCCGAGCGGTGATTCCACTCTTCTGTTGGATTCGGAGTCTCCGGAGTCCGGAATTTCCAAGGGCTCCTCGGATGGCGTGGTCTCCGGTTTCCTGAATTATCCGTCGTCGGAGTCCGGCGGCCACGATCAGGAGTTTTCGGAGAATTCCGTCGGGCCGTTGTCGTCTCAAGGCTCCGGGATTCCCGAGGCGGGCAATTCTCCTACTCATTCCGGCAACTCCGATCGCGACGTGTCGTCGAACGTCACTACTGCCGATGAGAAGGTGAAGATAGAGGAGGAGATGACCAGAAACGGCTTCGTTGCGAAGAGGAAGAAAGAGAGCGGCGGCGAAGAAGGGAACGTGGAGTCGAGAAGCTCCAAGTATCGGAGGTCGGAGAGTGGCTTGAACGATGAAGATGAGAAGAGGAAGGCCAGATTGATGAGGAACAGAGAGAGTGCTCAGCTTTCGAGGCAGAGGAAGAAGCATTATGTGGAAGAGCTTGAAGATAAGGTAAGGGCTATGCATACAACTATCGCTGATTTGAATACTAAGATTTCATATATTATGGCCGAGAATGCTACTCTGAAGCAGCAATTGAGCAGTGGTAGTGGCATGTGCCCACCGCCGCAGCTGCCGCCTCCGGGGATGTACCCAATGCCACCCATGGGTTATCCATGGATGCCATACTCGCCTTATGTTGTGAAACCGCAAGGTTCTCAGGTCCCTTTGGTTCCCATACCTAGGCTTAAACCCCAGCAGCCTGTGCCTGCGCCAAAGCCGAAGAAGAAGTCGGAGAGTAAGACCAAGAAGGTTGCTAGCATTAGTTTCCTGGGTCTGCTGTTTTTCCTGTTGCTTTTTGGTGGACTTGTTCCCATGGTGAATGTTGGTTTTGGTGGGTCGAATTATGTTAGAGATAGGTTTTACGATCAGCAGAGGGCGAAGGTTTTGACGGTTGAGGGTCATTTGAATGGATCAGAGGGATTTATACCTTTAGGAGTATCTGGTGGGAAATTTGATGTCTCTAACAAAATTCATGAGAGGCAGAAAGAACAGGGGCTACCTGGCGTGGGTAATGCTAGTGAGCCTCTTGTTGCCTCTTTGTATGTTCCGAGAAATGATAAACTTGTTAAGATTGATGGGAACTTGATTATTCATTCAGTCCTGGCCAGTGAGAAAGCTAAAACTCATAGGAAGAGTAGGGAGGCCAGAGTGGAAGGAGCTAAAGATTTGGTTTCAGCATTGGCTATACCTGAAGCTGGAGTGAACAGAGGGAGACGTGCTCCTTTATACAGAACTCCTGCTGGACAACGGAAGGCTCTTACAGCTGGTTCTGCTGATGGTAAACTGCAGCAGTGGTTTCGTGAAGGTCTTGCTGGACCGTTGTTGAGTTCAGGCATGTGCACTGAAGTGTTCCAGTTTGATGTATCAGCTGCTACTCATTCAGGAGGTATAATTCCTGCCTCGTCAGTTGCCAATGTTTCTGAACACGGTTCAAATTCTGCAAGGCTTAACAGGGGAGGAAACAGAAGGATCCTTGGTGGTCGCGCAATTCCCCTTGCTGGATCCAATCATAATGTTACTGATGAAGAACGCGCCATAAGAAACAATCAGTCGAGCAACAACTTTCAAGGCAGTAATTCTTCCATGGTCGTTTCTGTTCTGGTTGATCCTAGAGAGGCAGGCGACATTGACGTTGATGGCATGATCAAACCCAAGTCACTTTCTCGGGTTTTCGTTGTTCTGCTTCTAGACAGTGTGAAGTATGTCACTTACTCATGCGTGCTTCCTCGCTCTGCTCCTCACTTAGTGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0006972 GO:0006986 GO:0006990 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901522 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

695

Amino Acids

75.05

Weight (kDa)

5.87

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	230 - 289	1.9e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40950 AT3G56660
fragaria_vesca	FvH4_4g26350
malus_domestica	MD07G1018800.v1.1
prunus_persica	Prupe.2G020400_v2.0.a1
pyrus_communis	pycom02g25650 pycom07g01490 pycom11g01510
rosa_chinensis	RchiOBHm_Chr4g0433931
rosa_laevigata	RLG00000006716
rosa_multiflora	Rmu_sc0000352.1_g000015 Rmu_sc0004983.1_g000009 Rmu_sc0023229.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375350
rosa_samantha	Rh4AG327400 Rh4BG334700 Rh4CG350500 Rh4DG331600
rosa_wichuraiana	Rw4G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
AccBSI	CCGCTC	2 cut(s)	297, 612
AccII	CGCG	3 cut(s)	516, 1815, 1863
AccIII	TCCGGA	2 cut(s)	331, 338
AcoI	YGGCCR	3 cut(s)	409, 837, 1434
AcsI	RAATTY	5 cut(s)	342, 433, 1280, 1299, 1765
AcuI	CTGAAG	3 cut(s)	875, 1542, 1695
AdeI	CACNNNGTG	1 cut(s)	2077
AfaI	GTAC	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	6 cut(s)	676, 773, 814, 1237, 1764, 1898
AhdI	GACNNNNNGTC	2 cut(s)	82, 523
AjiI	CACGTC	2 cut(s)	520, 1547
AjnI	CCWGG	3 cut(s)	1098, 1330, 1431
AleI	CACNNNNGTG	1 cut(s)	1676
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
Alw21I	GWGCWC	4 cut(s)	207, 730, 1552, 1673
Alw26I	GTCTC	5 cut(s)	333, 376, 459, 1294, 1537
Alw44I	GTGCAC	1 cut(s)	1669
Ama87I	CYCGRG	3 cut(s)	164, 473, 1995
Aor13HI	TCCGGA	2 cut(s)	331, 338
AoxI	GGCC	7 cut(s)	246, 409, 443, 699, 837, 1434, 1473
ApaLI	GTGCAC	1 cut(s)	1669
ApeKI	GCWGC	6 cut(s)	859, 898, 901, 1027, 1618, 1700
ApoI	RAATTY	5 cut(s)	342, 433, 1280, 1299, 1765
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
AspA2I	CCTAGG	1 cut(s)	1010
AspLEI	GCGC	3 cut(s)	1042, 1817, 1865
AspS9I	GGNCC	3 cut(s)	443, 991, 1646
AsuC2I	CCSGG	2 cut(s)	466, 912
AsuHPI	GGTGA	4 cut(s)	199, 311, 565, 1159
AsuNHI	GCTAGC	1 cut(s)	1085
AvaI	CYCGRG	3 cut(s)	164, 473, 1995
AvaII	GGWCC	2 cut(s)	991, 1646
AvrII	CCTAGG	1 cut(s)	1010
BaeGI	GKGCMC	2 cut(s)	890, 1673
BalI	TGGCCA	1 cut(s)	1436
BamHI	GGATCC	2 cut(s)	1800, 1832
BanII	GRGCYC	2 cut(s)	207, 356
BbsI	GAAGAC	2 cut(s)	12, 192
Bbv12I	GWGCWC	4 cut(s)	207, 730, 1552, 1673
BbvI	GCAGC	6 cut(s)	871, 888, 910, 1039, 1630, 1687
BccI	CCATC	4 cut(s)	356, 1400, 1601, 1961
BceAI	ACGGC	3 cut(s)	300, 430, 598
BcgI	CGANNNNNNTGC	2 cut(s)	1610, 1644
BciT130I	CCWGG	3 cut(s)	1100, 1332, 1433
BclI	TGATCA	1 cut(s)	1974
BcnI	CCSGG	2 cut(s)	466, 912
BcoDI	GTCTC	5 cut(s)	333, 376, 459, 1294, 1537
BfaI	CTAG	5 cut(s)	1011, 1086, 1347, 1941, 2018
BfmI	CTRYAG	1 cut(s)	1616
BglII	AGATCT	1 cut(s)	43
BlnI	CCTAGG	1 cut(s)	1010
BlpI	GCTNAGC	2 cut(s)	288, 729
Bme1390I	CCNGG	5 cut(s)	466, 912, 1100, 1332, 1433
Bme18I	GGWCC	2 cut(s)	991, 1646
BmeRI	GACNNNNNGTC	2 cut(s)	82, 523
BmeT110I	CYCGRG	3 cut(s)	164, 473, 1995
BmgBI	CACGTC	2 cut(s)	520, 1547
BmgT120I	GGNCC	3 cut(s)	443, 991, 1646
BmiI	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1802, 1834
BmrFI	CCNGG	5 cut(s)	466, 912, 1100, 1332, 1433
BmsI	GCATC	1 cut(s)	939
BmtI	GCTAGC	1 cut(s)	1089
BpiI	GAAGAC	2 cut(s)	12, 192
BplI	GAGNNNNNCTC	2 cut(s)	1534, 1566
BpmI	CTGGAG	2 cut(s)	24, 1548
Bpu1102I	GCTNAGC	2 cut(s)	288, 729
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	2 cut(s)	466, 912
BsaI	GGTCTC	1 cut(s)	376
BsaWI	WCCGGW	4 cut(s)	131, 331, 338, 374
Bse1I	ACTGG	2 cut(s)	1437, 1684
BseAI	TCCGGA	2 cut(s)	331, 338
BseBI	CCWGG	3 cut(s)	1100, 1332, 1433
BseGI	GGATG	4 cut(s)	261, 367, 921, 954
BseMII	CTCAG	4 cut(s)	24, 302, 743, 1001
BseNI	ACTGG	2 cut(s)	1437, 1684
BseRI	GAGGAG	5 cut(s)	90, 346, 578, 581, 2058
BseSI	GKGCMC	2 cut(s)	890, 1673
BseXI	GCAGC	6 cut(s)	871, 888, 910, 1039, 1630, 1687
BseYI	CCCAGC	1 cut(s)	1023
Bsh1236I	CGCG	3 cut(s)	516, 1815, 1863
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1436, 1475
BsiEI	CGRYCG	1 cut(s)	514
BsiHKAI	GWGCWC	4 cut(s)	207, 730, 1552, 1673
BsiHKCI	CYCGRG	3 cut(s)	164, 473, 1995
BsiSI	CCGG	9 cut(s)	69, 132, 332, 339, 375, 405, 465, 501, 911
BslFI	GGGAC	2 cut(s)	70, 977
BsmAI	GTCTC	5 cut(s)	333, 376, 459, 1294, 1537
BsmBI	CGTCTC	2 cut(s)	459, 1537
BsmFI	GGGAC	2 cut(s)	70, 977
BsmI	GAATGC	2 cut(s)	141, 850
BsnI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1436, 1475
Bso31I	GGTCTC	1 cut(s)	376
BsoBI	CYCGRG	3 cut(s)	164, 473, 1995
Bsp1286I	GDGCHC	6 cut(s)	207, 356, 730, 890, 1552, 1673
Bsp13I	TCCGGA	2 cut(s)	331, 338
Bsp1720I	GCTNAGC	2 cut(s)	288, 729
Bsp19I	CCATGG	4 cut(s)	933, 944, 1143, 1914
Bsp68I	TCGCGA	1 cut(s)	516
BspANI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1436, 1475
BspCNI	CTCAG	4 cut(s)	23, 301, 742, 1000
BspEI	TCCGGA	2 cut(s)	331, 338
BspFNI	CGCG	3 cut(s)	516, 1815, 1863
BspHI	TCATGA	1 cut(s)	1303
BspLI	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1802, 1834
BspMAI	CTGCAG	1 cut(s)	1620
BspOI	GCTAGC	1 cut(s)	1089
BspQI	GCTCTTC	1 cut(s)	759
BspTNI	GGTCTC	1 cut(s)	376
BsrBI	CCGCTC	2 cut(s)	297, 612
BsrI	ACTGG	2 cut(s)	1437, 1684
BssT1I	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1804, 1914
Bst2UI	CCWGG	3 cut(s)	1100, 1332, 1433
Bst4CI	ACNGT	5 cut(s)	191, 1222, 1650, 1760, 2024
Bst6I	CTCTTC	5 cut(s)	315, 590, 686, 759, 1457
BstAPI	GCANNNNNTGC	1 cut(s)	1033
BstC8I	GCNNGC	5 cut(s)	481, 1038, 1087, 1951, 2051
BstDEI	CTNAG	6 cut(s)	10, 288, 729, 819, 987, 2074
BstDSI	CCRYGG	4 cut(s)	933, 944, 1143, 1914
BstF5I	GGATG	4 cut(s)	261, 367, 921, 954
BstFNI	CGCG	3 cut(s)	516, 1815, 1863
BstHHI	GCGC	3 cut(s)	1042, 1817, 1865
BstMAI	GTCTC	5 cut(s)	333, 376, 459, 1294, 1537
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	8 cut(s)	739, 845, 901, 904, 958, 1033, 1592, 1601
BstNI	CCWGG	3 cut(s)	1100, 1332, 1433
BstNSI	RCATGY	2 cut(s)	886, 1669
BstSCI	CCNGG	5 cut(s)	464, 910, 1098, 1330, 1431
BstSFI	CTRYAG	1 cut(s)	1616
BstSLI	GKGCMC	2 cut(s)	890, 1673
BstUI	CGCG	3 cut(s)	516, 1815, 1863
BstV1I	GCAGC	6 cut(s)	871, 888, 910, 1039, 1630, 1687
BstV2I	GAAGAC	2 cut(s)	12, 192
BstX2I	RGATCY	4 cut(s)	43, 160, 1800, 1832
BstYI	RGATCY	4 cut(s)	43, 160, 1800, 1832
BsuRI	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1436, 1475
BtgI	CCRYGG	4 cut(s)	933, 944, 1143, 1914
BtrI	CACGTC	2 cut(s)	520, 1547
BtsCI	GGATG	4 cut(s)	261, 367, 921, 954
BtsI	GCAGTG	2 cut(s)	877, 1628
BtsIMutI	CAGTG	5 cut(s)	877, 1444, 1628, 1671, 2029
BtuMI	TCGCGA	1 cut(s)	516
Cac8I	GCNNGC	5 cut(s)	481, 1038, 1087, 1951, 2051
CciI	TCATGA	1 cut(s)	1303
CfoI	GCGC	3 cut(s)	1042, 1817, 1865
Cfr13I	GGNCC	3 cut(s)	443, 991, 1646
Csp6I	GTAC	1 cut(s)	919
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	6 cut(s)	10, 288, 729, 819, 987, 2074
DraIII	CACNNNGTG	1 cut(s)	2077
DrdI	GACNNNNNNGTC	1 cut(s)	14
DriI	GACNNNNNGTC	2 cut(s)	82, 523
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	3 cut(s)	409, 837, 1434
Eam1104I	CTCTTC	5 cut(s)	315, 590, 686, 759, 1457
Eam1105I	GACNNNNNGTC	2 cut(s)	82, 523
EarI	CTCTTC	5 cut(s)	315, 590, 686, 759, 1457
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1804, 1914
Eco24I	GRGCYC	2 cut(s)	207, 356
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	991, 1646
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	3 cut(s)	875, 1542, 1695
Eco88I	CYCGRG	3 cut(s)	164, 473, 1995
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	991
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	1098, 1330, 1431
EcoT14I	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1804, 1914
EcoT22I	ATGCAT	1 cut(s)	795
EcoT38I	GRGCYC	2 cut(s)	207, 356
ErhI	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1804, 1914
Esp3I	CGTCTC	2 cut(s)	459, 1537
FaqI	GGGAC	2 cut(s)	70, 977
FauI	CCCGC	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	1974
FokI	GGATG	4 cut(s)	248, 374, 928, 961
FriOI	GRGCYC	2 cut(s)	207, 356
FspBI	CTAG	5 cut(s)	1011, 1086, 1347, 1941, 2018
GlaI	GCGC	3 cut(s)	1041, 1816, 1864
GsaI	CCCAGC	1 cut(s)	1027
GsuI	CTGGAG	2 cut(s)	24, 1548
HaeIII	GGCC	7 cut(s)	248, 411, 445, 701, 839, 1436, 1475
HapII	CCGG	9 cut(s)	69, 132, 332, 339, 375, 405, 465, 501, 911
HhaI	GCGC	3 cut(s)	1042, 1817, 1865
Hin6I	GCGC	3 cut(s)	1040, 1815, 1863
HinP1I	GCGC	3 cut(s)	1040, 1815, 1863
HpaII	CCGG	9 cut(s)	69, 132, 332, 339, 375, 405, 465, 501, 911
HphI	GGTGA	4 cut(s)	199, 311, 565, 1159
Hpy166II	GTNNAC	4 cut(s)	1133, 1534, 1613, 1671
Hpy8I	GTNNAC	4 cut(s)	1133, 1534, 1613, 1671
HpyCH4III	ACNGT	5 cut(s)	191, 1222, 1650, 1760, 2024
HpyCH4IV	ACGT	5 cut(s)	519, 531, 630, 1546, 1962
HpyCH4V	TGCA	4 cut(s)	793, 1618, 1671, 1772
HpyF10VI	GCNNNNNNNGC	8 cut(s)	739, 845, 901, 904, 958, 1033, 1592, 1601
HpyF3I	CTNAG	6 cut(s)	10, 288, 729, 819, 987, 2074
HpySE526I	ACGT	5 cut(s)	519, 531, 630, 1546, 1962
HspAI	GCGC	3 cut(s)	1040, 1815, 1863
Kpn2I	TCCGGA	2 cut(s)	331, 338
Ksp22I	TGATCA	1 cut(s)	1974
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	7 cut(s)	185, 359, 467, 650, 1487, 1555, 2071
Lsp1109I	GCAGC	6 cut(s)	871, 888, 910, 1039, 1630, 1687
LweI	GCATC	1 cut(s)	939
MaeI	CTAG	5 cut(s)	1011, 1086, 1347, 1941, 2018
MaeII	ACGT	5 cut(s)	519, 531, 630, 1546, 1962
MaeIII	GTNAC	6 cut(s)	53, 532, 1846, 1986, 2035, 2077
MbiI	CCGCTC	2 cut(s)	297, 612
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	4 cut(s)	43, 160, 1800, 1832
MhlI	GDGCHC	6 cut(s)	207, 356, 730, 890, 1552, 1673
MlsI	TGGCCA	1 cut(s)	1436
MluNI	TGGCCA	1 cut(s)	1436
MlyI	GAGTC	6 cut(s)	2, 92, 335, 344, 410, 644
MmeI	TCCRAC	7 cut(s)	138, 222, 297, 305, 378, 642, 1041
Mox20I	TGGCCA	1 cut(s)	1436
Mph1103I	ATGCAT	1 cut(s)	795
MroI	TCCGGA	2 cut(s)	331, 338
MscI	TGGCCA	1 cut(s)	1436
MseI	TTAA	4 cut(s)	1017, 1398, 1779, 2086
MslI	CAYNNNNRTG	3 cut(s)	134, 1236, 1676
Msp20I	TGGCCA	1 cut(s)	1436
MspA1I	CMGCKG	3 cut(s)	901, 1595, 1700
MspI	CCGG	9 cut(s)	69, 132, 332, 339, 375, 405, 465, 501, 911
MspR9I	CCNGG	5 cut(s)	466, 912, 1100, 1332, 1433
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	2 cut(s)	141, 850
MvaI	CCWGG	3 cut(s)	1100, 1332, 1433
MvnI	CGCG	3 cut(s)	516, 1815, 1863
MwoI	GCNNNNNNNGC	8 cut(s)	739, 845, 901, 904, 958, 1033, 1592, 1601
NciI	CCSGG	2 cut(s)	466, 912
NcoI	CCATGG	4 cut(s)	933, 944, 1143, 1914
NheI	GCTAGC	1 cut(s)	1085
NlaIV	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1802, 1834
NmeAIII	GCCGAG	2 cut(s)	318, 865
NmuCI	GTSAC	4 cut(s)	532, 1986, 2035, 2077
NruI	TCGCGA	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	2 cut(s)	886, 1669
OliI	CACNNNNGTG	1 cut(s)	1676
PagI	TCATGA	1 cut(s)	1303
PciSI	GCTCTTC	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PctI	GAATGC	2 cut(s)	141, 850
PfeI	GAWTC	4 cut(s)	146, 302, 320, 469
PflFI	GACNNNGTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	464
Ple19I	CGATCG	1 cut(s)	514
PleI	GAGTC	6 cut(s)	2, 91, 334, 343, 409, 643
PpsI	GAGTC	6 cut(s)	2, 91, 334, 343, 409, 643
PpuMI	RGGWCCY	1 cut(s)	991
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	991
Psp6I	CCWGG	3 cut(s)	1098, 1330, 1431
PspFI	CCCAGC	1 cut(s)	1023
PspGI	CCWGG	3 cut(s)	1098, 1330, 1431
PspN4I	GGNNCC	7 cut(s)	181, 355, 463, 993, 1002, 1802, 1834
PspPI	GGNCC	3 cut(s)	443, 991, 1646
PspPPI	RGGWCCY	1 cut(s)	991
PsrI	GAACNNNNNNTAC	4 cut(s)	15, 47, 1311, 1343
PstI	CTGCAG	1 cut(s)	1620
PsuI	RGATCY	4 cut(s)	43, 160, 1800, 1832
PsyI	GACNNNGTC	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	514
PvuII	CAGCTG	3 cut(s)	901, 1595, 1700
RruI	TCGCGA	1 cut(s)	516
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	3 cut(s)	134, 1236, 1676
SacI	GAGCTC	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	1017, 1398, 1779, 2086
Sau96I	GGNCC	3 cut(s)	443, 991, 1646
SchI	GAGTC	6 cut(s)	2, 92, 335, 344, 410, 644
ScrFI	CCNGG	5 cut(s)	466, 912, 1100, 1332, 1433
SduI	GDGCHC	6 cut(s)	207, 356, 730, 890, 1552, 1673
SfaNI	GCATC	1 cut(s)	939
SfcI	CTRYAG	1 cut(s)	1616
SinI	GGWCC	2 cut(s)	991, 1646
SmiMI	CAYNNNNRTG	3 cut(s)	134, 1236, 1676
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
SspMI	CTAG	5 cut(s)	1011, 1086, 1347, 1941, 2018
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	5 cut(s)	464, 910, 1098, 1330, 1431
StyI	CCWWGG	7 cut(s)	348, 933, 944, 1010, 1143, 1804, 1914
TaaI	ACNGT	5 cut(s)	191, 1222, 1650, 1760, 2024
TaiI	ACGT	5 cut(s)	522, 534, 633, 1549, 1965
TaqI	TCGA	7 cut(s)	81, 105, 527, 638, 737, 1169, 1883
TauI	GCSGC	5 cut(s)	411, 615, 618, 898, 907
TfiI	GAWTC	4 cut(s)	146, 302, 320, 469
Tru1I	TTAA	4 cut(s)	1017, 1398, 1779, 2086
Tru9I	TTAA	4 cut(s)	1017, 1398, 1779, 2086
TscAI	CASTG	5 cut(s)	877, 1444, 1628, 1678, 2029
TseFI	GTSAC	4 cut(s)	532, 1986, 2035, 2077
TseI	GCWGC	6 cut(s)	859, 898, 901, 1027, 1618, 1700
Tsp45I	GTSAC	4 cut(s)	532, 1986, 2035, 2077
TspDTI	ATGAA	6 cut(s)	142, 696, 816, 1292, 1412, 1869
TspGWI	ACGGA	3 cut(s)	381, 427, 1594
TspRI	CASTG	5 cut(s)	877, 1444, 1628, 1678, 2029
Tth111I	GACNNNGTC	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	1669
VpaK11BI	GGWCC	2 cut(s)	991, 1646
XapI	RAATTY	5 cut(s)	342, 433, 1280, 1299, 1765
XbaI	TCTAGA	1 cut(s)	2017
XceI	RCATGY	2 cut(s)	886, 1669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmaJI	CCTAGG	1 cut(s)	1010
XspI	CTAG	5 cut(s)	1011, 1086, 1347, 1941, 2018
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.