Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011890

Physical Location & Seq

Genomic Coordinates Forward (+)

57886613 .. 57889284

Gene Structure 2672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGGAAGACTCAGTCGTCGCCGAACCGCCGACACTCCCTCCAGATCTGACCCGTAATGCTACCAATTCCGGCGAGGACTTCGAGTCCCTTCCGATCCCTCCTCTCGATCCTCAATTCTTCCCATCTGACACCGGAATGCCCTCCGATTCCTTCATGTCGGATCTCGGGTTCGGGTTCGGCTCCGAAGACAATTGCGATTACGAGCTCACCTTTGATGATTTGGACAATCTCTACCTCCCGTCGGAGGCCGACGACTTCCTCATCCCCGACGGGTTTGATCCGACGGCTCAGCCGAGCGGAGATTCCACTCTTCTGCTGGATTCGCAGTCTCCGGAGTCCGGACTTTCCAAGGGCTCCTCGGATGGCGTAGTCTCCGGTTTCCTGAATTATCCGTCGTCGGAGTCCGGCGGCCACGATCAGGAGTTTTCGGAGAATTCCGGCGGGCCGTTGTCGTCTCAGGGCTCCGGGATTCCCGAGGCGGGCAATTCTCCTACTCATTCCGGCAACTCCGATCGCGACGTGTCGTCGTCGAACGTCACTACTGCCGATGAGAAGGTGAAGATAGAGGAGGAGATGACCAGAAGCGGCTTAGTTGCGAAGAGGAAGAAAGAGAGCGGCGGCGAAGAAGGGAACGTGGAGTCGAGAAGCTCCAAGTATCGGAGGTCGGAGAGTGGCTTGAACGATGAAGATGAGAAGAGGAAGGCCAGATTGATGAGGAACAGAGAGAGTGCTCAGCTTTCGAGGCAGAGGAAGAAGCATTATGTGGAAGAGCTTGAAGATAAGGTTAGGGCTATGCATACAACTATAGCTGATTTGAATAATAAGATTTCATATATTATGGCCGAGAATGCTACTCTGAAGCAGCAATTGAGCTGTGGTAGTGGCATGTGCCCGCCACCGCAGCCGCCGCCTCCGGGGATGTACCCAATGCCACCCATGGGTTATCCATGGATGCCATACTCGCCTTATGTTGTGAAACCGCAAGGTTCTCAGGTCCCTTTGGTTCCCATACCTAGGCTTAAACCCCAGCAGCCCGCGGCTGCACCAAAGCCGAAGAAGAAGTCGGAGAGTAAGACCAAGAAGGTTGCTAGCATTAGTTTCCTGGGTCTGCTGTTTTTCCTGTTGCTTTTTGGTGGACTTGTTCCCATGGTGAATGTTGGTTTTGGTGGGTCGAATTATGTTAGAGATAGGTTTTATGATCAGCAGAGGGCGAAGGTTTTGACGGTTGAGAGTCATTTGAATGGATCAGAGGGAAATATACCTTTAGGAATATCTGGTGGGAAATTTGATGTCTCTAACAAAATTCATGAGAGGGGTCATAAGCAGAAAGAACAGGGGTTACCTGGCGTGGGTAATGCTAGTGAGCCTCTTGTTGCCTCTTTGTATGTTCCGAGAAATGATAAACTTGTTAAGATTGATGGGAACTTGATTATTCATTCAGTCCTGGCCAGTGAGAAAGCTAAAACTCATAAGAAGAGTAGGGAGGCCAGAGTGGAAGGAGCTAAAGATTTGGTTTCAGCATTGGCTATACCTGAAGCTGGAGTGAACAGAGGGAGACGTGCTCCTTTATACAGAACTCCTGCTGGACAACGCAAGGCTCTTACAGCTGGTTCTGCTGATGGTAAACTGCAGCAGTGGTTTCGTGAAGGTCTTGCTGGACCGTTGTTGAGTTCAGGCATGTGCACTGAAGTGTTCCAGTTTGATGTATCAGCTGCTACTCATTCAGGAGGCATAATTCCTGCTTCGTCAGTTGCCAATGTCTCTGAACACGGTTCAAATTCTGCAAGGCTTAACAGGGGAGGAAACAGAAGGATCCTTGGTGGTCGCGCAATTCCCCTTGCTGGATCCAATCATAATGTTACTGATGAAGAACGCGCCATAAGAAACAATCAGTCGAGCAACAACTTTCAAGGCAGTAATTCTTCCATGGTCGTTTCCGTTCTGGTTGATCCTAGAGAGGCAGGTGACATTGACGTTGATGGCATGATCAAACCCAAGTCACTTTCTCGGGTTTTCGTTGTTCTGCTTCTAGACAGTGTGAAGTATGTCACTTACTCATGTGTGCTTCCTCGCTCTGCTCCTCACTTAGTGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0006972 GO:0006986 GO:0006990 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0030968 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0080090 GO:0098827 GO:0140110 GO:1901522 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

699

Amino Acids

75.33

Weight (kDa)

6.08

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	231 - 290	2.7e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40950 AT3G56660
fragaria_vesca	FvH4_4g26350
malus_domestica	MD07G1018800.v1.1
prunus_persica	Prupe.2G020400_v2.0.a1
pyrus_communis	pycom02g25650 pycom07g01490 pycom11g01510
rosa_chinensis	RchiOBHm_Chr4g0433931
rosa_laevigata	RLG00000006716
rosa_multiflora	Rmu_sc0000352.1_g000015 Rmu_sc0004983.1_g000009 Rmu_sc0023229.1_g000001
rosa_roxburghii	Rroxscaffold_5G00375350
rosa_samantha	Rh4AG327400 Rh4BG334700 Rh4CG350500 Rh4DG331600
rosa_wichuraiana	Rw4G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1952
AasI	GACNNNNNNGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	1952
AccBSI	CCGCTC	2 cut(s)	297, 615
AccII	CGCG	4 cut(s)	516, 1037, 1827, 1875
AccIII	TCCGGA	2 cut(s)	331, 338
AcoI	YGGCCR	3 cut(s)	409, 840, 1446
AcsI	RAATTY	4 cut(s)	433, 1283, 1302, 1777
AcuI	CTGAAG	3 cut(s)	878, 1554, 1707
AdeI	CACNNNGTG	1 cut(s)	2089
AfaI	GTAC	1 cut(s)	923
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	6 cut(s)	679, 776, 817, 1240, 1776, 1910
AhdI	GACNNNNNGTC	2 cut(s)	82, 523
AjiI	CACGTC	2 cut(s)	520, 1559
AjnI	CCWGG	3 cut(s)	1101, 1342, 1443
AleI	CACNNNNGTG	1 cut(s)	1688
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
Alw21I	GWGCWC	4 cut(s)	207, 733, 1564, 1685
Alw26I	GTCTC	6 cut(s)	333, 376, 459, 1297, 1549, 1765
Alw44I	GTGCAC	1 cut(s)	1681
Ama87I	CYCGRG	3 cut(s)	164, 473, 2007
Aor13HI	TCCGGA	2 cut(s)	331, 338
AoxI	GGCC	7 cut(s)	246, 409, 443, 702, 840, 1446, 1485
ApaLI	GTGCAC	1 cut(s)	1681
ApeKI	GCWGC	6 cut(s)	862, 901, 1030, 1040, 1630, 1712
ApoI	RAATTY	4 cut(s)	433, 1283, 1302, 1777
ArsI	GACNNNNNNTTYG	2 cut(s)	1046, 1078
AspA2I	CCTAGG	1 cut(s)	1013
AspLEI	GCGC	2 cut(s)	1829, 1877
AspS9I	GGNCC	3 cut(s)	443, 994, 1658
AsuC2I	CCSGG	2 cut(s)	466, 915
AsuHPI	GGTGA	4 cut(s)	199, 568, 1162, 1976
AsuNHI	GCTAGC	1 cut(s)	1088
AvaI	CYCGRG	3 cut(s)	164, 473, 2007
AvaII	GGWCC	2 cut(s)	994, 1658
AvrII	CCTAGG	1 cut(s)	1013
BaeGI	GKGCMC	2 cut(s)	893, 1685
BalI	TGGCCA	1 cut(s)	1448
BamHI	GGATCC	2 cut(s)	1812, 1844
BanII	GRGCYC	3 cut(s)	207, 356, 464
BbsI	GAAGAC	2 cut(s)	12, 192
Bbv12I	GWGCWC	4 cut(s)	207, 733, 1564, 1685
BbvI	GCAGC	6 cut(s)	874, 913, 1027, 1042, 1642, 1699
BccI	CCATC	5 cut(s)	130, 356, 1412, 1613, 1973
BceAI	ACGGC	2 cut(s)	300, 430
BcgI	CGANNNNNNTGC	2 cut(s)	1622, 1656
BciT130I	CCWGG	3 cut(s)	1103, 1344, 1445
BclI	TGATCA	2 cut(s)	1198, 1986
BcnI	CCSGG	2 cut(s)	466, 915
BcoDI	GTCTC	6 cut(s)	333, 376, 459, 1297, 1549, 1765
BfaI	CTAG	5 cut(s)	1014, 1089, 1359, 1953, 2030
BfmI	CTRYAG	2 cut(s)	804, 1628
BfuAI	ACCTGC	1 cut(s)	1952
BglII	AGATCT	1 cut(s)	43
BlnI	CCTAGG	1 cut(s)	1013
BlpI	GCTNAGC	2 cut(s)	288, 732
Bme1390I	CCNGG	5 cut(s)	466, 915, 1103, 1344, 1445
Bme18I	GGWCC	2 cut(s)	994, 1658
BmeRI	GACNNNNNGTC	2 cut(s)	82, 523
BmeT110I	CYCGRG	3 cut(s)	164, 473, 2007
BmgBI	CACGTC	2 cut(s)	520, 1559
BmgT120I	GGNCC	3 cut(s)	443, 994, 1658
BmiI	GGNNCC	7 cut(s)	181, 355, 463, 996, 1005, 1814, 1846
BmrFI	CCNGG	5 cut(s)	466, 915, 1103, 1344, 1445
BmsI	GCATC	1 cut(s)	942
BmtI	GCTAGC	1 cut(s)	1092
BpiI	GAAGAC	2 cut(s)	12, 192
BplI	GAGNNNNNCTC	2 cut(s)	1546, 1578
BpmI	CTGGAG	2 cut(s)	24, 1560
Bpu1102I	GCTNAGC	2 cut(s)	288, 732
BpuMI	CCSGG	2 cut(s)	466, 915
BsaWI	WCCGGW	4 cut(s)	131, 331, 338, 374
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse1I	ACTGG	2 cut(s)	1449, 1696
BseAI	TCCGGA	2 cut(s)	331, 338
BseBI	CCWGG	3 cut(s)	1103, 1344, 1445
BseGI	GGATG	4 cut(s)	261, 367, 924, 957
BseMII	CTCAG	5 cut(s)	24, 302, 470, 746, 1004
BseNI	ACTGG	2 cut(s)	1449, 1696
BseRI	GAGGAG	5 cut(s)	90, 346, 581, 584, 2070
BseSI	GKGCMC	2 cut(s)	893, 1685
BseXI	GCAGC	6 cut(s)	874, 913, 1027, 1042, 1642, 1699
BseYI	CCCAGC	1 cut(s)	1026
BsgI	GTGCAG	1 cut(s)	1026
Bsh1236I	CGCG	4 cut(s)	516, 1037, 1827, 1875
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	7 cut(s)	248, 411, 445, 704, 842, 1448, 1487
BsiEI	CGRYCG	1 cut(s)	514
BsiHKAI	GWGCWC	4 cut(s)	207, 733, 1564, 1685
BsiHKCI	CYCGRG	3 cut(s)	164, 473, 2007
BslFI	GGGAC	2 cut(s)	70, 980
BsmAI	GTCTC	6 cut(s)	333, 376, 459, 1297, 1549, 1765
BsmBI	CGTCTC	2 cut(s)	459, 1549
BsmFI	GGGAC	2 cut(s)	70, 980
BsmI	GAATGC	2 cut(s)	141, 853
BsnI	GGCC	7 cut(s)	248, 411, 445, 704, 842, 1448, 1487
BsoBI	CYCGRG	3 cut(s)	164, 473, 2007
Bsp1286I	GDGCHC	7 cut(s)	207, 356, 464, 733, 893, 1564, 1685
Bsp13I	TCCGGA	2 cut(s)	331, 338
Bsp1720I	GCTNAGC	2 cut(s)	288, 732
Bsp19I	CCATGG	4 cut(s)	936, 947, 1146, 1926
Bsp68I	TCGCGA	1 cut(s)	516
BspANI	GGCC	7 cut(s)	248, 411, 445, 704, 842, 1448, 1487
BspCNI	CTCAG	5 cut(s)	23, 301, 469, 745, 1003
BspEI	TCCGGA	2 cut(s)	331, 338
BspFNI	CGCG	4 cut(s)	516, 1037, 1827, 1875
BspHI	TCATGA	1 cut(s)	1306
BspLI	GGNNCC	7 cut(s)	181, 355, 463, 996, 1005, 1814, 1846
BspMAI	CTGCAG	1 cut(s)	1632
BspMI	ACCTGC	1 cut(s)	1952
BspOI	GCTAGC	1 cut(s)	1092
BspQI	GCTCTTC	1 cut(s)	762
BsrBI	CCGCTC	2 cut(s)	297, 615
BsrI	ACTGG	2 cut(s)	1449, 1696
BssT1I	CCWWGG	7 cut(s)	348, 936, 947, 1013, 1146, 1816, 1926
Bst2UI	CCWGG	3 cut(s)	1103, 1344, 1445
Bst4CI	ACNGT	4 cut(s)	1225, 1662, 1772, 2036
Bst6I	CTCTTC	5 cut(s)	315, 593, 689, 762, 1469
BstC8I	GCNNGC	5 cut(s)	443, 481, 893, 1035, 1090
BstDEI	CTNAG	7 cut(s)	10, 288, 456, 589, 732, 990, 2086
BstDSI	CCRYGG	5 cut(s)	936, 947, 1035, 1146, 1926
BstEII	GGTNACC	1 cut(s)	1338
BstF5I	GGATG	4 cut(s)	261, 367, 924, 957
BstFNI	CGCG	4 cut(s)	516, 1037, 1827, 1875
BstHHI	GCGC	2 cut(s)	1829, 1877
BstMAI	GTCTC	6 cut(s)	333, 376, 459, 1297, 1549, 1765
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	8 cut(s)	322, 742, 848, 901, 907, 961, 1604, 1613
BstNI	CCWGG	3 cut(s)	1103, 1344, 1445
BstNSI	RCATGY	2 cut(s)	889, 1681
BstPI	GGTNACC	1 cut(s)	1338
BstSCI	CCNGG	5 cut(s)	464, 913, 1101, 1342, 1443
BstSFI	CTRYAG	2 cut(s)	804, 1628
BstSLI	GKGCMC	2 cut(s)	893, 1685
BstUI	CGCG	4 cut(s)	516, 1037, 1827, 1875
BstV1I	GCAGC	6 cut(s)	874, 913, 1027, 1042, 1642, 1699
BstV2I	GAAGAC	2 cut(s)	12, 192
BstX2I	RGATCY	4 cut(s)	43, 160, 1812, 1844
BstYI	RGATCY	4 cut(s)	43, 160, 1812, 1844
BsuRI	GGCC	7 cut(s)	248, 411, 445, 704, 842, 1448, 1487
BtgI	CCRYGG	5 cut(s)	936, 947, 1035, 1146, 1926
BtrI	CACGTC	2 cut(s)	520, 1559
BtsCI	GGATG	4 cut(s)	261, 367, 924, 957
BtsI	GCAGTG	1 cut(s)	1640
BtsIMutI	CAGTG	4 cut(s)	1456, 1640, 1683, 2041
BtuMI	TCGCGA	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	1952
Cac8I	GCNNGC	5 cut(s)	443, 481, 893, 1035, 1090
CciI	TCATGA	1 cut(s)	1306
CfoI	GCGC	2 cut(s)	1829, 1877
Cfr13I	GGNCC	3 cut(s)	443, 994, 1658
Cfr42I	CCGCGG	1 cut(s)	1038
Csp6I	GTAC	1 cut(s)	922
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	7 cut(s)	10, 288, 456, 589, 732, 990, 2086
DraIII	CACNNNGTG	1 cut(s)	2089
DrdI	GACNNNNNNGTC	1 cut(s)	14
DriI	GACNNNNNGTC	2 cut(s)	82, 523
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	3 cut(s)	409, 840, 1446
Eam1104I	CTCTTC	5 cut(s)	315, 593, 689, 762, 1469
Eam1105I	GACNNNNNGTC	2 cut(s)	82, 523
EarI	CTCTTC	5 cut(s)	315, 593, 689, 762, 1469
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	7 cut(s)	348, 936, 947, 1013, 1146, 1816, 1926
Eco24I	GRGCYC	3 cut(s)	207, 356, 464
Eco47I	GGWCC	2 cut(s)	994, 1658
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	3 cut(s)	878, 1554, 1707
Eco88I	CYCGRG	3 cut(s)	164, 473, 2007
Eco91I	GGTNACC	1 cut(s)	1338
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	994
EcoO65I	GGTNACC	1 cut(s)	1338
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	1101, 1342, 1443
EcoT14I	CCWWGG	7 cut(s)	348, 936, 947, 1013, 1146, 1816, 1926
EcoT22I	ATGCAT	1 cut(s)	798
EcoT38I	GRGCYC	3 cut(s)	207, 356, 464
ErhI	CCWWGG	7 cut(s)	348, 936, 947, 1013, 1146, 1816, 1926
Esp3I	CGTCTC	2 cut(s)	459, 1549
FaqI	GGGAC	2 cut(s)	70, 980
FauI	CCCGC	4 cut(s)	434, 472, 900, 1042
FbaI	TGATCA	2 cut(s)	1198, 1986
FokI	GGATG	4 cut(s)	248, 374, 931, 964
FriOI	GRGCYC	3 cut(s)	207, 356, 464
FspBI	CTAG	5 cut(s)	1014, 1089, 1359, 1953, 2030
GlaI	GCGC	2 cut(s)	1828, 1876
GsaI	CCCAGC	1 cut(s)	1030
GsuI	CTGGAG	2 cut(s)	24, 1560
HaeIII	GGCC	7 cut(s)	248, 411, 445, 704, 842, 1448, 1487
HhaI	GCGC	2 cut(s)	1829, 1877
Hin6I	GCGC	2 cut(s)	1827, 1875
HinP1I	GCGC	2 cut(s)	1827, 1875
HphI	GGTGA	4 cut(s)	199, 568, 1162, 1976
Hpy166II	GTNNAC	4 cut(s)	1136, 1546, 1625, 1683
Hpy8I	GTNNAC	4 cut(s)	1136, 1546, 1625, 1683
HpyCH4III	ACNGT	4 cut(s)	1225, 1662, 1772, 2036
HpyCH4IV	ACGT	5 cut(s)	519, 534, 633, 1558, 1974
HpyCH4V	TGCA	5 cut(s)	796, 1043, 1630, 1683, 1784
HpyF10VI	GCNNNNNNNGC	8 cut(s)	322, 742, 848, 901, 907, 961, 1604, 1613
HpyF3I	CTNAG	7 cut(s)	10, 288, 456, 589, 732, 990, 2086
HpySE526I	ACGT	5 cut(s)	519, 534, 633, 1558, 1974
HspAI	GCGC	2 cut(s)	1827, 1875
Kpn2I	TCCGGA	2 cut(s)	331, 338
Ksp22I	TGATCA	2 cut(s)	1198, 1986
KspI	CCGCGG	1 cut(s)	1038
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	7 cut(s)	185, 359, 467, 653, 1499, 1567, 2083
Lsp1109I	GCAGC	6 cut(s)	874, 913, 1027, 1042, 1642, 1699
LweI	GCATC	1 cut(s)	942
MaeI	CTAG	5 cut(s)	1014, 1089, 1359, 1953, 2030
MaeII	ACGT	5 cut(s)	519, 534, 633, 1558, 1974
MaeIII	GTNAC	7 cut(s)	535, 1338, 1858, 1964, 1998, 2047, 2089
MbiI	CCGCTC	2 cut(s)	297, 615
MfeI	CAATTG	2 cut(s)	190, 866
MflI	RGATCY	4 cut(s)	43, 160, 1812, 1844
MhlI	GDGCHC	7 cut(s)	207, 356, 464, 733, 893, 1564, 1685
MlsI	TGGCCA	1 cut(s)	1448
MluNI	TGGCCA	1 cut(s)	1448
MlyI	GAGTC	6 cut(s)	2, 92, 344, 410, 647, 1240
MmeI	TCCRAC	6 cut(s)	138, 222, 305, 378, 645, 1044
Mox20I	TGGCCA	1 cut(s)	1448
Mph1103I	ATGCAT	1 cut(s)	798
MroI	TCCGGA	2 cut(s)	331, 338
MscI	TGGCCA	1 cut(s)	1448
MseI	TTAA	4 cut(s)	1020, 1410, 1791, 2098
MslI	CAYNNNNRTG	3 cut(s)	134, 1239, 1688
Msp20I	TGGCCA	1 cut(s)	1448
MspA1I	CMGCKG	3 cut(s)	1037, 1607, 1712
MspR9I	CCNGG	5 cut(s)	466, 915, 1103, 1344, 1445
MunI	CAATTG	2 cut(s)	190, 866
Mva1269I	GAATGC	2 cut(s)	141, 853
MvaI	CCWGG	3 cut(s)	1103, 1344, 1445
MvnI	CGCG	4 cut(s)	516, 1037, 1827, 1875
MwoI	GCNNNNNNNGC	8 cut(s)	322, 742, 848, 901, 907, 961, 1604, 1613
NciI	CCSGG	2 cut(s)	466, 915
NcoI	CCATGG	4 cut(s)	936, 947, 1146, 1926
NheI	GCTAGC	1 cut(s)	1088
NlaIV	GGNNCC	7 cut(s)	181, 355, 463, 996, 1005, 1814, 1846
NmeAIII	GCCGAG	2 cut(s)	318, 868
NmuCI	GTSAC	5 cut(s)	535, 1964, 1998, 2047, 2089
NruI	TCGCGA	1 cut(s)	516
NsiI	ATGCAT	1 cut(s)	798
NspI	RCATGY	2 cut(s)	889, 1681
OliI	CACNNNNGTG	1 cut(s)	1688
PagI	TCATGA	1 cut(s)	1306
PaqCI	CACCTGC	1 cut(s)	1952
PciSI	GCTCTTC	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PctI	GAATGC	2 cut(s)	141, 853
PfeI	GAWTC	4 cut(s)	146, 302, 320, 469
PflFI	GACNNNGTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	464
Ple19I	CGATCG	1 cut(s)	514
PleI	GAGTC	6 cut(s)	2, 91, 343, 409, 646, 1239
PpsI	GAGTC	6 cut(s)	2, 91, 343, 409, 646, 1239
PpuMI	RGGWCCY	1 cut(s)	994
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	994
Psp6I	CCWGG	3 cut(s)	1101, 1342, 1443
PspEI	GGTNACC	1 cut(s)	1338
PspFI	CCCAGC	1 cut(s)	1026
PspGI	CCWGG	3 cut(s)	1101, 1342, 1443
PspN4I	GGNNCC	7 cut(s)	181, 355, 463, 996, 1005, 1814, 1846
PspPI	GGNCC	3 cut(s)	443, 994, 1658
PspPPI	RGGWCCY	1 cut(s)	994
PsrI	GAACNNNNNNTAC	2 cut(s)	1323, 1355
PstI	CTGCAG	1 cut(s)	1632
PsuI	RGATCY	4 cut(s)	43, 160, 1812, 1844
PsyI	GACNNNGTC	1 cut(s)	11
PvuI	CGATCG	1 cut(s)	514
PvuII	CAGCTG	2 cut(s)	1607, 1712
RruI	TCGCGA	1 cut(s)	516
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
RseI	CAYNNNNRTG	3 cut(s)	134, 1239, 1688
SacI	GAGCTC	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	1038
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	4 cut(s)	1020, 1410, 1791, 2098
Sau96I	GGNCC	3 cut(s)	443, 994, 1658
SchI	GAGTC	6 cut(s)	2, 92, 344, 410, 647, 1240
ScrFI	CCNGG	5 cut(s)	466, 915, 1103, 1344, 1445
SduI	GDGCHC	7 cut(s)	207, 356, 464, 733, 893, 1564, 1685
SfaNI	GCATC	1 cut(s)	942
SfcI	CTRYAG	2 cut(s)	804, 1628
Sfr303I	CCGCGG	1 cut(s)	1038
SgrBI	CCGCGG	1 cut(s)	1038
SinI	GGWCC	2 cut(s)	994, 1658
SmiMI	CAYNNNNRTG	3 cut(s)	134, 1239, 1688
SspMI	CTAG	5 cut(s)	1014, 1089, 1359, 1953, 2030
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	5 cut(s)	464, 913, 1101, 1342, 1443
StyI	CCWWGG	7 cut(s)	348, 936, 947, 1013, 1146, 1816, 1926
TaaI	ACNGT	4 cut(s)	1225, 1662, 1772, 2036
TaiI	ACGT	5 cut(s)	522, 537, 636, 1561, 1977
TaqI	TCGA	7 cut(s)	81, 105, 530, 641, 740, 1172, 1895
TauI	GCSGC	7 cut(s)	411, 588, 618, 621, 907, 910, 1040
TfiI	GAWTC	4 cut(s)	146, 302, 320, 469
Tru1I	TTAA	4 cut(s)	1020, 1410, 1791, 2098
Tru9I	TTAA	4 cut(s)	1020, 1410, 1791, 2098
TscAI	CASTG	4 cut(s)	1456, 1640, 1690, 2041
TseFI	GTSAC	5 cut(s)	535, 1964, 1998, 2047, 2089
TseI	GCWGC	6 cut(s)	862, 901, 1030, 1040, 1630, 1712
Tsp45I	GTSAC	5 cut(s)	535, 1964, 1998, 2047, 2089
TspDTI	ATGAA	6 cut(s)	142, 699, 819, 1295, 1424, 1881
TspGWI	ACGGA	2 cut(s)	381, 1927
TspRI	CASTG	4 cut(s)	1456, 1640, 1690, 2041
Tth111I	GACNNNGTC	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	1681
VpaK11BI	GGWCC	2 cut(s)	994, 1658
XapI	RAATTY	4 cut(s)	433, 1283, 1302, 1777
XbaI	TCTAGA	1 cut(s)	2029
XceI	RCATGY	2 cut(s)	889, 1681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmaJI	CCTAGG	1 cut(s)	1013
XspI	CTAG	5 cut(s)	1014, 1089, 1359, 1953, 2030
Zsp2I	ATGCAT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.