tRNA uridine 5-carboxymethylaminomethyl modification enzyme
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G13440 |
| fragaria_vesca | FvH4_7g05150 |
| malus_domestica | MD02G1260800.v1.1 MD07G1060500.v1.1 MD07G1060700.v1.1 |
| prunus_persica | Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 |
| pyrus_communis | pycom02g22270 pycom07g04640 pycom07g04650 |
| rosa_chinensis | RchiOBHm_Chr1g0331701 |
| rosa_laevigata | RLG00000029721 |
| rosa_multiflora | Rmu_sc0004723.1_g000011 Rmu_sc0005044.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00318890 |
| rosa_rugosa | Rorug01G0095700 |
| rosa_samantha | Rh1AG119400 Rh1BG090900 Rh1CG114500 Rh1DG124900 |
| rosa_wichuraiana | Rw1G009650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 170, 737 |
| AccII | CGCG | 1 cut(s) | 691 |
| AciI | CCGC | 1 cut(s) | 496 |
| AcsI | RAATTY | 1 cut(s) | 567 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AdeI | CACNNNGTG | 2 cut(s) | 205, 737 |
| AfaI | GTAC | 3 cut(s) | 198, 267, 781 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 170, 737, 836 |
| AflIII | ACRYGT | 1 cut(s) | 776 |
| AgsI | TTSAA | 8 cut(s) | 435, 488, 659, 879, 884, 935, 1037, 1047 |
| AjnI | CCWGG | 1 cut(s) | 1027 |
| AluBI | AGCT | 3 cut(s) | 80, 617, 961 |
| AluI | AGCT | 3 cut(s) | 80, 617, 961 |
| Alw21I | GWGCWC | 2 cut(s) | 310, 794 |
| Alw26I | GTCTC | 4 cut(s) | 192, 921, 991, 1113 |
| Alw44I | GTGCAC | 1 cut(s) | 306 |
| AoxI | GGCC | 4 cut(s) | 283, 860, 943, 1055 |
| ApaI | GGGCCC | 1 cut(s) | 287 |
| ApaLI | GTGCAC | 1 cut(s) | 306 |
| ApeKI | GCWGC | 7 cut(s) | 80, 151, 417, 763, 1181, 1184, 1231 |
| ApoI | RAATTY | 1 cut(s) | 567 |
| AspA2I | CCTAGG | 1 cut(s) | 863 |
| AspLEI | GCGC | 2 cut(s) | 648, 691 |
| AspS9I | GGNCC | 5 cut(s) | 176, 283, 284, 860, 943 |
| AsuHPI | GGTGA | 4 cut(s) | 115, 233, 463, 788 |
| AvaII | GGWCC | 1 cut(s) | 176 |
| AvrII | CCTAGG | 1 cut(s) | 863 |
| BaeGI | GKGCMC | 2 cut(s) | 287, 310 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 763, 796 |
| BanII | GRGCYC | 1 cut(s) | 287 |
| Bbv12I | GWGCWC | 2 cut(s) | 310, 794 |
| BbvCI | CCTCAGC | 1 cut(s) | 1052 |
| BbvI | GCAGC | 7 cut(s) | 67, 163, 429, 750, 1168, 1196, 1218 |
| BccI | CCATC | 4 cut(s) | 11, 837, 1124, 1240 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 191, 225 |
| BciT130I | CCWGG | 1 cut(s) | 1029 |
| BciVI | GTATCC | 1 cut(s) | 15 |
| BcoDI | GTCTC | 4 cut(s) | 192, 921, 991, 1113 |
| BfaI | CTAG | 2 cut(s) | 86, 864 |
| BfmI | CTRYAG | 6 cut(s) | 415, 594, 1001, 1068, 1164, 1182 |
| BfoI | RGCGCY | 1 cut(s) | 649 |
| BfuI | GTATCC | 1 cut(s) | 15 |
| BisI | GCNGC | 7 cut(s) | 81, 152, 418, 764, 1182, 1185, 1232 |
| BlnI | CCTAGG | 1 cut(s) | 863 |
| BlsI | GCNGC | 7 cut(s) | 82, 153, 419, 765, 1183, 1186, 1233 |
| Bme1390I | CCNGG | 1 cut(s) | 1029 |
| Bme18I | GGWCC | 1 cut(s) | 176 |
| BmgT120I | GGNCC | 5 cut(s) | 176, 283, 284, 860, 943 |
| BmiI | GGNNCC | 5 cut(s) | 284, 285, 682, 729, 861 |
| BmrFI | CCNGG | 1 cut(s) | 1029 |
| BmsI | GCATC | 3 cut(s) | 98, 199, 236 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1052 |
| BpuEI | CTTGAG | 3 cut(s) | 262, 1036, 1288 |
| Bsa29I | ATCGAT | 2 cut(s) | 244, 1128 |
| BsaAI | YACGTR | 1 cut(s) | 779 |
| BsaI | GGTCTC | 1 cut(s) | 1113 |
| BsaJI | CCNNGG | 4 cut(s) | 214, 649, 863, 1028 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 831, 861 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 170, 737, 836 |
| Bse1I | ACTGG | 2 cut(s) | 682, 988 |
| Bse3DI | GCAATG | 2 cut(s) | 299, 453 |
| BseBI | CCWGG | 1 cut(s) | 1029 |
| BseCI | ATCGAT | 2 cut(s) | 244, 1128 |
| BseDI | CCNNGG | 4 cut(s) | 214, 649, 863, 1028 |
| BseGI | GGATG | 3 cut(s) | 214, 516, 848 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 170, 737, 836 |
| BseMI | GCAATG | 2 cut(s) | 299, 453 |
| BseMII | CTCAG | 1 cut(s) | 1043 |
| BseNI | ACTGG | 2 cut(s) | 682, 988 |
| BseRI | GAGGAG | 2 cut(s) | 72, 1190 |
| BseSI | GKGCMC | 2 cut(s) | 287, 310 |
| BseXI | GCAGC | 7 cut(s) | 67, 163, 429, 750, 1168, 1196, 1218 |
| BseYI | CCCAGC | 2 cut(s) | 163, 685 |
| BsgI | GTGCAG | 1 cut(s) | 989 |
| Bsh1236I | CGCG | 1 cut(s) | 691 |
| BshFI | GGCC | 4 cut(s) | 285, 862, 945, 1057 |
| BshVI | ATCGAT | 2 cut(s) | 244, 1128 |
| BsiHKAI | GWGCWC | 2 cut(s) | 310, 794 |
| BsiSI | CCGG | 1 cut(s) | 956 |
| BslFI | GGGAC | 1 cut(s) | 1239 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 170, 737, 836 |
| BsmAI | GTCTC | 4 cut(s) | 192, 921, 991, 1113 |
| BsmFI | GGGAC | 1 cut(s) | 1239 |
| BsnI | GGCC | 4 cut(s) | 285, 862, 945, 1057 |
| Bso31I | GGTCTC | 1 cut(s) | 1113 |
| Bsp120I | GGGCCC | 1 cut(s) | 283 |
| Bsp1286I | GDGCHC | 3 cut(s) | 287, 310, 794 |
| Bsp1407I | TGTACA | 1 cut(s) | 196 |
| Bsp143I | GATC | 3 cut(s) | 241, 400, 664 |
| BspACI | CCGC | 1 cut(s) | 496 |
| BspANI | GGCC | 4 cut(s) | 285, 862, 945, 1057 |
| BspCNI | CTCAG | 1 cut(s) | 1044 |
| BspDI | ATCGAT | 2 cut(s) | 244, 1128 |
| BspFNI | CGCG | 1 cut(s) | 691 |
| BspLI | GGNNCC | 5 cut(s) | 284, 285, 682, 729, 861 |
| BspMAI | CTGCAG | 3 cut(s) | 419, 598, 1186 |
| BspTNI | GGTCTC | 1 cut(s) | 1113 |
| BsrDI | GCAATG | 2 cut(s) | 299, 453 |
| BsrGI | TGTACA | 1 cut(s) | 196 |
| BsrI | ACTGG | 2 cut(s) | 682, 988 |
| BssECI | CCNNGG | 4 cut(s) | 214, 649, 863, 1028 |
| BssMI | GATC | 3 cut(s) | 241, 400, 664 |
| BssT1I | CCWWGG | 3 cut(s) | 214, 649, 863 |
| Bst2UI | CCWGG | 1 cut(s) | 1029 |
| Bst4CI | ACNGT | 3 cut(s) | 701, 709, 1005 |
| Bst6I | CTCTTC | 2 cut(s) | 120, 741 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 305 |
| BstAUI | TGTACA | 1 cut(s) | 196 |
| BstBAI | YACGTR | 1 cut(s) | 779 |
| BstC8I | GCNNGC | 6 cut(s) | 70, 306, 594, 607, 1059, 1089 |
| BstDEI | CTNAG | 2 cut(s) | 8, 1052 |
| BstF5I | GGATG | 3 cut(s) | 214, 516, 848 |
| BstFNI | CGCG | 1 cut(s) | 691 |
| BstH2I | RGCGCY | 1 cut(s) | 649 |
| BstHHI | GCGC | 2 cut(s) | 648, 691 |
| BstKTI | GATC | 3 cut(s) | 244, 403, 667 |
| BstMAI | GTCTC | 4 cut(s) | 192, 921, 991, 1113 |
| BstMBI | GATC | 3 cut(s) | 241, 400, 664 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 86, 296, 305, 602, 967 |
| BstNI | CCWGG | 1 cut(s) | 1029 |
| BstNSI | RCATGY | 1 cut(s) | 68 |
| BstSCI | CCNGG | 1 cut(s) | 1027 |
| BstSFI | CTRYAG | 6 cut(s) | 415, 594, 1001, 1068, 1164, 1182 |
| BstSLI | GKGCMC | 2 cut(s) | 287, 310 |
| BstUI | CGCG | 1 cut(s) | 691 |
| BstV1I | GCAGC | 7 cut(s) | 67, 163, 429, 750, 1168, 1196, 1218 |
| Bsu15I | ATCGAT | 2 cut(s) | 244, 1128 |
| BsuI | GTATCC | 1 cut(s) | 15 |
| BsuRI | GGCC | 4 cut(s) | 285, 862, 945, 1057 |
| BsuTUI | ATCGAT | 2 cut(s) | 244, 1128 |
| BtgZI | GCGATG | 1 cut(s) | 756 |
| BtsCI | GGATG | 3 cut(s) | 214, 516, 848 |
| BtsIMutI | CAGTG | 2 cut(s) | 630, 705 |
| Cac8I | GCNNGC | 6 cut(s) | 70, 306, 594, 607, 1059, 1089 |
| CfoI | GCGC | 2 cut(s) | 648, 691 |
| Cfr13I | GGNCC | 5 cut(s) | 176, 283, 284, 860, 943 |
| ClaI | ATCGAT | 2 cut(s) | 244, 1128 |
| Csp6I | GTAC | 3 cut(s) | 197, 266, 780 |
| CviAII | CATG | 3 cut(s) | 26, 65, 821 |
| CviQI | GTAC | 3 cut(s) | 197, 266, 780 |
| DdeI | CTNAG | 2 cut(s) | 8, 1052 |
| DpnI | GATC | 3 cut(s) | 243, 402, 666 |
| DpnII | GATC | 3 cut(s) | 241, 400, 664 |
| DraIII | CACNNNGTG | 2 cut(s) | 205, 737 |
| Eam1104I | CTCTTC | 2 cut(s) | 120, 741 |
| EarI | CTCTTC | 2 cut(s) | 120, 741 |
| Eco130I | CCWWGG | 3 cut(s) | 214, 649, 863 |
| Eco147I | AGGCCT | 1 cut(s) | 1057 |
| Eco24I | GRGCYC | 1 cut(s) | 287 |
| Eco31I | GGTCTC | 1 cut(s) | 1113 |
| Eco32I | GATATC | 1 cut(s) | 460 |
| Eco47I | GGWCC | 1 cut(s) | 176 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| EcoO109I | RGGNCCY | 3 cut(s) | 283, 284, 860 |
| EcoRII | CCWGG | 1 cut(s) | 1027 |
| EcoRV | GATATC | 1 cut(s) | 460 |
| EcoT14I | CCWWGG | 3 cut(s) | 214, 649, 863 |
| EcoT22I | ATGCAT | 1 cut(s) | 1201 |
| EcoT38I | GRGCYC | 1 cut(s) | 287 |
| ErhI | CCWWGG | 3 cut(s) | 214, 649, 863 |
| FaeI | CATG | 3 cut(s) | 29, 68, 824 |
| FaqI | GGGAC | 1 cut(s) | 1239 |
| FatI | CATG | 3 cut(s) | 25, 64, 820 |
| Fnu4HI | GCNGC | 7 cut(s) | 81, 152, 418, 764, 1182, 1185, 1232 |
| FokI | GGATG | 3 cut(s) | 221, 523, 855 |
| FriOI | GRGCYC | 1 cut(s) | 287 |
| Fsp4HI | GCNGC | 7 cut(s) | 81, 152, 418, 764, 1182, 1185, 1232 |
| FspBI | CTAG | 2 cut(s) | 86, 864 |
| GlaI | GCGC | 2 cut(s) | 647, 690 |
| GluI | GCNGC | 7 cut(s) | 81, 152, 418, 764, 1182, 1185, 1232 |
| GsaI | CCCAGC | 2 cut(s) | 167, 689 |
| HaeII | RGCGCY | 1 cut(s) | 649 |
| HaeIII | GGCC | 4 cut(s) | 285, 862, 945, 1057 |
| HapII | CCGG | 1 cut(s) | 956 |
| HhaI | GCGC | 2 cut(s) | 648, 691 |
| Hin1II | CATG | 3 cut(s) | 29, 68, 824 |
| Hin6I | GCGC | 2 cut(s) | 646, 689 |
| HinP1I | GCGC | 2 cut(s) | 646, 689 |
| HinfI | GANTC | 4 cut(s) | 611, 627, 914, 975 |
| HpaII | CCGG | 1 cut(s) | 956 |
| HphI | GGTGA | 4 cut(s) | 115, 233, 463, 788 |
| Hpy166II | GTNNAC | 6 cut(s) | 176, 199, 266, 308, 697, 989 |
| Hpy188I | TCNGA | 3 cut(s) | 56, 241, 1245 |
| Hpy188III | TCNNGA | 7 cut(s) | 440, 541, 720, 905, 932, 1015, 1267 |
| Hpy8I | GTNNAC | 6 cut(s) | 176, 199, 266, 308, 697, 989 |
| HpyAV | CCTTC | 5 cut(s) | 482, 537, 594, 850, 885 |
| HpyCH4III | ACNGT | 3 cut(s) | 701, 709, 1005 |
| HpyCH4IV | ACGT | 2 cut(s) | 736, 778 |
| HpyCH4V | TGCA | 9 cut(s) | 68, 159, 308, 417, 596, 820, 970, 1184, 1199 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 86, 296, 305, 602, 967 |
| HpyF3I | CTNAG | 2 cut(s) | 8, 1052 |
| HpySE526I | ACGT | 2 cut(s) | 736, 778 |
| Hsp92II | CATG | 3 cut(s) | 29, 68, 824 |
| HspAI | GCGC | 2 cut(s) | 646, 689 |
| Kzo9I | GATC | 3 cut(s) | 241, 400, 664 |
| LmnI | GCTCC | 1 cut(s) | 958 |
| Lsp1109I | GCAGC | 7 cut(s) | 67, 163, 429, 750, 1168, 1196, 1218 |
| LweI | GCATC | 3 cut(s) | 98, 199, 236 |
| MaeI | CTAG | 2 cut(s) | 86, 864 |
| MaeII | ACGT | 2 cut(s) | 736, 778 |
| MaeIII | GTNAC | 2 cut(s) | 451, 1005 |
| MalI | GATC | 3 cut(s) | 243, 402, 666 |
| MboI | GATC | 3 cut(s) | 241, 400, 664 |
| MboII | GAAGA | 5 cut(s) | 107, 244, 758, 896, 1132 |
| MfeI | CAATTG | 1 cut(s) | 879 |
| MhlI | GDGCHC | 3 cut(s) | 287, 310, 794 |
| MluCI | AATT | 6 cut(s) | 141, 225, 435, 567, 879, 1039 |
| MlyI | GAGTC | 2 cut(s) | 621, 923 |
| MmeI | TCCRAC | 1 cut(s) | 34 |
| Mph1103I | ATGCAT | 1 cut(s) | 1201 |
| MseI | TTAA | 1 cut(s) | 671 |
| MslI | CAYNNNNRTG | 2 cut(s) | 554, 1244 |
| MspI | CCGG | 1 cut(s) | 956 |
| MspR9I | CCNGG | 1 cut(s) | 1029 |
| MunI | CAATTG | 1 cut(s) | 879 |
| MvaI | CCWGG | 1 cut(s) | 1029 |
| MvnI | CGCG | 1 cut(s) | 691 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 86, 296, 305, 602, 967 |
| NdeII | GATC | 3 cut(s) | 241, 400, 664 |
| NlaIII | CATG | 3 cut(s) | 29, 68, 824 |
| NlaIV | GGNNCC | 5 cut(s) | 284, 285, 682, 729, 861 |
| NmeAIII | GCCGAG | 1 cut(s) | 971 |
| NmuCI | GTSAC | 1 cut(s) | 451 |
| NsiI | ATGCAT | 1 cut(s) | 1201 |
| NspI | RCATGY | 1 cut(s) | 68 |
| PceI | AGGCCT | 1 cut(s) | 1057 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 301 |
| PfeI | GAWTC | 2 cut(s) | 611, 975 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 170, 737 |
| PkrI | GCNGC | 7 cut(s) | 82, 153, 419, 765, 1183, 1186, 1233 |
| PleI | GAGTC | 2 cut(s) | 621, 922 |
| PpsI | GAGTC | 2 cut(s) | 621, 922 |
| Ppu21I | YACGTR | 1 cut(s) | 779 |
| Psp6I | CCWGG | 1 cut(s) | 1027 |
| PspFI | CCCAGC | 2 cut(s) | 163, 685 |
| PspGI | CCWGG | 1 cut(s) | 1027 |
| PspN4I | GGNNCC | 5 cut(s) | 284, 285, 682, 729, 861 |
| PspOMI | GGGCCC | 1 cut(s) | 283 |
| PspPI | GGNCC | 5 cut(s) | 176, 283, 284, 860, 943 |
| PstI | CTGCAG | 3 cut(s) | 419, 598, 1186 |
| RsaI | GTAC | 3 cut(s) | 198, 267, 781 |
| RsaNI | GTAC | 3 cut(s) | 197, 266, 780 |
| RseI | CAYNNNNRTG | 2 cut(s) | 554, 1244 |
| SaqAI | TTAA | 1 cut(s) | 671 |
| SatI | GCNGC | 7 cut(s) | 81, 152, 418, 764, 1182, 1185, 1232 |
| Sau3AI | GATC | 3 cut(s) | 241, 400, 664 |
| Sau96I | GGNCC | 5 cut(s) | 176, 283, 284, 860, 943 |
| SbfI | CCTGCAGG | 1 cut(s) | 598 |
| SchI | GAGTC | 2 cut(s) | 621, 923 |
| ScrFI | CCNGG | 1 cut(s) | 1029 |
| SdaI | CCTGCAGG | 1 cut(s) | 598 |
| SduI | GDGCHC | 3 cut(s) | 287, 310, 794 |
| SetI | ASST | 8 cut(s) | 82, 432, 493, 619, 739, 781, 869, 963 |
| SfaNI | GCATC | 3 cut(s) | 98, 199, 236 |
| SfcI | CTRYAG | 6 cut(s) | 415, 594, 1001, 1068, 1164, 1182 |
| SinI | GGWCC | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 554, 1244 |
| SmlI | CTYRAG | 3 cut(s) | 277, 1015, 1267 |
| SmoI | CTYRAG | 3 cut(s) | 277, 1015, 1267 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 598 |
| Sse9I | AATT | 6 cut(s) | 141, 225, 435, 567, 879, 1039 |
| SseBI | AGGCCT | 1 cut(s) | 1057 |
| SsiI | CCGC | 1 cut(s) | 496 |
| SspI | AATATT | 2 cut(s) | 133, 927 |
| SspMI | CTAG | 2 cut(s) | 86, 864 |
| StuI | AGGCCT | 1 cut(s) | 1057 |
| StyD4I | CCNGG | 1 cut(s) | 1027 |
| StyI | CCWWGG | 3 cut(s) | 214, 649, 863 |
| TaaI | ACNGT | 3 cut(s) | 701, 709, 1005 |
| TaiI | ACGT | 2 cut(s) | 739, 781 |
| TaqI | TCGA | 3 cut(s) | 244, 439, 1128 |
| TaqII | GACCGA | 1 cut(s) | 1095 |
| TasI | AATT | 6 cut(s) | 141, 225, 435, 567, 879, 1039 |
| TatI | WGTACW | 2 cut(s) | 196, 265 |
| TfiI | GAWTC | 2 cut(s) | 611, 975 |
| Tru1I | TTAA | 1 cut(s) | 671 |
| Tru9I | TTAA | 1 cut(s) | 671 |
| TscAI | CASTG | 2 cut(s) | 637, 712 |
| TseFI | GTSAC | 1 cut(s) | 451 |
| TseI | GCWGC | 7 cut(s) | 80, 151, 417, 763, 1181, 1184, 1231 |
| Tsp45I | GTSAC | 1 cut(s) | 451 |
| TspDTI | ATGAA | 4 cut(s) | 45, 527, 759, 837 |
| TspRI | CASTG | 2 cut(s) | 637, 712 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 170, 737 |
| VneI | GTGCAC | 1 cut(s) | 306 |
| VpaK11BI | GGWCC | 1 cut(s) | 176 |
| XapI | RAATTY | 1 cut(s) | 567 |
| XceI | RCATGY | 1 cut(s) | 68 |
| XmaJI | CCTAGG | 1 cut(s) | 863 |
| XspI | CTAG | 2 cut(s) | 86, 864 |
| Zsp2I | ATGCAT | 1 cut(s) | 1201 |