MD07G1060500.v1.1

tRNA uridine 5-carboxymethylaminomethyl modification enzyme

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
5621087 .. 5628779
7693 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1060500.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGTGTCTAAGTGATGATGGGATACATGATGAAAGATATGATGTCATTGTGGTCGGAGGAGGACATGCAGGCTGTGAAGCTGCCCTAGCATCTGCTCATTTAGGGGCGAAAACTCTTCTACTCACCCTAAATATTGATAGAATTGCTTGGCAGCCCTGCAACCCAGCAGTTGGTGGACCAGCAAAGTCTCAACTTGTACACGAAGTGGATGCCCTTGGTGGTGAAATTGGGAAGATTTCTGATCGATGCTATTTACAGAAGCGTGTACTCAATGCCTCAAGGGGCCCTGCTGTTCGGGCATTGCGTGCACAGACTGATAAACGGGAATATGCTATGGAAATGAGAAAAATAGTAGAGAGGCAAATCTATGTTTTTGTGGCTATTTCTTTCCATATATTTGATCTGCTTTTGTTCTGCAGCACACCAAACCTTTCAATTCGAGAGGCAATGGTGACAGATATCTTATTAGGAAAGAATGACAATGTTGAAGGTGTGCGGACATTCTTTGGGATGAACTTCTACTCTCCTTCAGTTATTCTCACGACAGGCACATTTATGAGTGGTAAAATTTGGGTTGGTAGAACTTCTATGCCTGCAGGAAGGGCTGGCGAATCAGCTTCACTTGGACTCACTGAAAACTTACAGCGCCTTGGATTTGAAACTGATCGGTTAAAGACTGGAACCCCAGCGCGTGTGGACTGTCGCACTGTTGATTTTTCTGGATTGGAACCACAACGTGGCGATGAAGAGGGAACAAATGTGCTGCTATCTCACACACGTACCACAAAGAGCACTCACCAACTAATCAAAGATAACTTGCATGAAACTCCTACTTATGGAGGATGGGTTGAGGCGAAGGGGCCTAGGTATTGCCCTTCAATTGAAGATAAGATTGTTCGGTTTCAGGATAAAGAGTCTCATCAAATATTTCTTGAACCAGAGGGCCGAGATGTGCCGGAGCTTTATGTGCAGGGATTCTCAACTGGTTTACCAGAGAGACTACAGTTACCACTCTTGAGGACTTTGCCTGGGCTTGAAAATTGTTCAATGCTGAGGCCTGCTTATGCTGTAGAGTATGACTTCTTGCCTGCTTATCAATGTTCTCGGTCTCTTATGACAAAGAAAATCGATGGGCTTTTCTTCTCTGGTCAAATAAATGGAACTACAGGCTATGAGGAGGCTGCAGCACAAAATAATGCATTAGGCTTGGCATTATTTCTGGTATCAATGCTGCCAGACATTCAGATGGCAAGTCCCTCATTGTTCTTGAGAGAGAAAGCAGTTATATAG

Protein Analysis

430

Amino Acids

47.31

Weight (kDa)

6.04

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIDA PF01134 14 - 397 7e-134 Glucose inhibited division protein A
FAD_oxidored PF12831 14 - 42 4.5e-06 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 170, 737
AccII CGCG 1 cut(s) 691
AciI CCGC 1 cut(s) 496
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 1 cut(s) 513
AdeI CACNNNGTG 2 cut(s) 205, 737
AfaI GTAC 3 cut(s) 198, 267, 781
AfiI CCNNNNNNNGG 3 cut(s) 170, 737, 836
AflIII ACRYGT 1 cut(s) 776
AgsI TTSAA 8 cut(s) 435, 488, 659, 879, 884, 935, 1037, 1047
AjnI CCWGG 1 cut(s) 1027
AluBI AGCT 3 cut(s) 80, 617, 961
AluI AGCT 3 cut(s) 80, 617, 961
Alw21I GWGCWC 2 cut(s) 310, 794
Alw26I GTCTC 4 cut(s) 192, 921, 991, 1113
Alw44I GTGCAC 1 cut(s) 306
AoxI GGCC 4 cut(s) 283, 860, 943, 1055
ApaI GGGCCC 1 cut(s) 287
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 7 cut(s) 80, 151, 417, 763, 1181, 1184, 1231
ApoI RAATTY 1 cut(s) 567
AspA2I CCTAGG 1 cut(s) 863
AspLEI GCGC 2 cut(s) 648, 691
AspS9I GGNCC 5 cut(s) 176, 283, 284, 860, 943
AsuHPI GGTGA 4 cut(s) 115, 233, 463, 788
AvaII GGWCC 1 cut(s) 176
AvrII CCTAGG 1 cut(s) 863
BaeGI GKGCMC 2 cut(s) 287, 310
BaeI ACNNNNGTAYC 2 cut(s) 763, 796
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 2 cut(s) 310, 794
BbvCI CCTCAGC 1 cut(s) 1052
BbvI GCAGC 7 cut(s) 67, 163, 429, 750, 1168, 1196, 1218
BccI CCATC 4 cut(s) 11, 837, 1124, 1240
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 1029
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 4 cut(s) 192, 921, 991, 1113
BfaI CTAG 2 cut(s) 86, 864
BfmI CTRYAG 6 cut(s) 415, 594, 1001, 1068, 1164, 1182
BfoI RGCGCY 1 cut(s) 649
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 7 cut(s) 81, 152, 418, 764, 1182, 1185, 1232
BlnI CCTAGG 1 cut(s) 863
BlsI GCNGC 7 cut(s) 82, 153, 419, 765, 1183, 1186, 1233
Bme1390I CCNGG 1 cut(s) 1029
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 5 cut(s) 176, 283, 284, 860, 943
BmiI GGNNCC 5 cut(s) 284, 285, 682, 729, 861
BmrFI CCNGG 1 cut(s) 1029
BmsI GCATC 3 cut(s) 98, 199, 236
Bpu10I CCTNAGC 1 cut(s) 1052
BpuEI CTTGAG 3 cut(s) 262, 1036, 1288
Bsa29I ATCGAT 2 cut(s) 244, 1128
BsaAI YACGTR 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 1113
BsaJI CCNNGG 4 cut(s) 214, 649, 863, 1028
BsaXI ACNNNNNCTCC 2 cut(s) 831, 861
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 737, 836
Bse1I ACTGG 2 cut(s) 682, 988
Bse3DI GCAATG 2 cut(s) 299, 453
BseBI CCWGG 1 cut(s) 1029
BseCI ATCGAT 2 cut(s) 244, 1128
BseDI CCNNGG 4 cut(s) 214, 649, 863, 1028
BseGI GGATG 3 cut(s) 214, 516, 848
BseLI CCNNNNNNNGG 3 cut(s) 170, 737, 836
BseMI GCAATG 2 cut(s) 299, 453
BseMII CTCAG 1 cut(s) 1043
BseNI ACTGG 2 cut(s) 682, 988
BseRI GAGGAG 2 cut(s) 72, 1190
BseSI GKGCMC 2 cut(s) 287, 310
BseXI GCAGC 7 cut(s) 67, 163, 429, 750, 1168, 1196, 1218
BseYI CCCAGC 2 cut(s) 163, 685
BsgI GTGCAG 1 cut(s) 989
Bsh1236I CGCG 1 cut(s) 691
BshFI GGCC 4 cut(s) 285, 862, 945, 1057
BshVI ATCGAT 2 cut(s) 244, 1128
BsiHKAI GWGCWC 2 cut(s) 310, 794
BsiSI CCGG 1 cut(s) 956
BslFI GGGAC 1 cut(s) 1239
BslI CCNNNNNNNGG 3 cut(s) 170, 737, 836
BsmAI GTCTC 4 cut(s) 192, 921, 991, 1113
BsmFI GGGAC 1 cut(s) 1239
BsnI GGCC 4 cut(s) 285, 862, 945, 1057
Bso31I GGTCTC 1 cut(s) 1113
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 3 cut(s) 287, 310, 794
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 3 cut(s) 241, 400, 664
BspACI CCGC 1 cut(s) 496
BspANI GGCC 4 cut(s) 285, 862, 945, 1057
BspCNI CTCAG 1 cut(s) 1044
BspDI ATCGAT 2 cut(s) 244, 1128
BspFNI CGCG 1 cut(s) 691
BspLI GGNNCC 5 cut(s) 284, 285, 682, 729, 861
BspMAI CTGCAG 3 cut(s) 419, 598, 1186
BspTNI GGTCTC 1 cut(s) 1113
BsrDI GCAATG 2 cut(s) 299, 453
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 2 cut(s) 682, 988
BssECI CCNNGG 4 cut(s) 214, 649, 863, 1028
BssMI GATC 3 cut(s) 241, 400, 664
BssT1I CCWWGG 3 cut(s) 214, 649, 863
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 3 cut(s) 701, 709, 1005
Bst6I CTCTTC 2 cut(s) 120, 741
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 196
BstBAI YACGTR 1 cut(s) 779
BstC8I GCNNGC 6 cut(s) 70, 306, 594, 607, 1059, 1089
BstDEI CTNAG 2 cut(s) 8, 1052
BstF5I GGATG 3 cut(s) 214, 516, 848
BstFNI CGCG 1 cut(s) 691
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 2 cut(s) 648, 691
BstKTI GATC 3 cut(s) 244, 403, 667
BstMAI GTCTC 4 cut(s) 192, 921, 991, 1113
BstMBI GATC 3 cut(s) 241, 400, 664
BstMWI GCNNNNNNNGC 5 cut(s) 86, 296, 305, 602, 967
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 1027
BstSFI CTRYAG 6 cut(s) 415, 594, 1001, 1068, 1164, 1182
BstSLI GKGCMC 2 cut(s) 287, 310
BstUI CGCG 1 cut(s) 691
BstV1I GCAGC 7 cut(s) 67, 163, 429, 750, 1168, 1196, 1218
Bsu15I ATCGAT 2 cut(s) 244, 1128
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 4 cut(s) 285, 862, 945, 1057
BsuTUI ATCGAT 2 cut(s) 244, 1128
BtgZI GCGATG 1 cut(s) 756
BtsCI GGATG 3 cut(s) 214, 516, 848
BtsIMutI CAGTG 2 cut(s) 630, 705
Cac8I GCNNGC 6 cut(s) 70, 306, 594, 607, 1059, 1089
CfoI GCGC 2 cut(s) 648, 691
Cfr13I GGNCC 5 cut(s) 176, 283, 284, 860, 943
ClaI ATCGAT 2 cut(s) 244, 1128
Csp6I GTAC 3 cut(s) 197, 266, 780
CviAII CATG 3 cut(s) 26, 65, 821
CviQI GTAC 3 cut(s) 197, 266, 780
DdeI CTNAG 2 cut(s) 8, 1052
DpnI GATC 3 cut(s) 243, 402, 666
DpnII GATC 3 cut(s) 241, 400, 664
DraIII CACNNNGTG 2 cut(s) 205, 737
Eam1104I CTCTTC 2 cut(s) 120, 741
EarI CTCTTC 2 cut(s) 120, 741
Eco130I CCWWGG 3 cut(s) 214, 649, 863
Eco147I AGGCCT 1 cut(s) 1057
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 1113
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 513
EcoO109I RGGNCCY 3 cut(s) 283, 284, 860
EcoRII CCWGG 1 cut(s) 1027
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 3 cut(s) 214, 649, 863
EcoT22I ATGCAT 1 cut(s) 1201
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 3 cut(s) 214, 649, 863
FaeI CATG 3 cut(s) 29, 68, 824
FaqI GGGAC 1 cut(s) 1239
FatI CATG 3 cut(s) 25, 64, 820
Fnu4HI GCNGC 7 cut(s) 81, 152, 418, 764, 1182, 1185, 1232
FokI GGATG 3 cut(s) 221, 523, 855
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 7 cut(s) 81, 152, 418, 764, 1182, 1185, 1232
FspBI CTAG 2 cut(s) 86, 864
GlaI GCGC 2 cut(s) 647, 690
GluI GCNGC 7 cut(s) 81, 152, 418, 764, 1182, 1185, 1232
GsaI CCCAGC 2 cut(s) 167, 689
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 4 cut(s) 285, 862, 945, 1057
HapII CCGG 1 cut(s) 956
HhaI GCGC 2 cut(s) 648, 691
Hin1II CATG 3 cut(s) 29, 68, 824
Hin6I GCGC 2 cut(s) 646, 689
HinP1I GCGC 2 cut(s) 646, 689
HinfI GANTC 4 cut(s) 611, 627, 914, 975
HpaII CCGG 1 cut(s) 956
HphI GGTGA 4 cut(s) 115, 233, 463, 788
Hpy166II GTNNAC 6 cut(s) 176, 199, 266, 308, 697, 989
Hpy188I TCNGA 3 cut(s) 56, 241, 1245
Hpy188III TCNNGA 7 cut(s) 440, 541, 720, 905, 932, 1015, 1267
Hpy8I GTNNAC 6 cut(s) 176, 199, 266, 308, 697, 989
HpyAV CCTTC 5 cut(s) 482, 537, 594, 850, 885
HpyCH4III ACNGT 3 cut(s) 701, 709, 1005
HpyCH4IV ACGT 2 cut(s) 736, 778
HpyCH4V TGCA 9 cut(s) 68, 159, 308, 417, 596, 820, 970, 1184, 1199
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 296, 305, 602, 967
HpyF3I CTNAG 2 cut(s) 8, 1052
HpySE526I ACGT 2 cut(s) 736, 778
Hsp92II CATG 3 cut(s) 29, 68, 824
HspAI GCGC 2 cut(s) 646, 689
Kzo9I GATC 3 cut(s) 241, 400, 664
LmnI GCTCC 1 cut(s) 958
Lsp1109I GCAGC 7 cut(s) 67, 163, 429, 750, 1168, 1196, 1218
LweI GCATC 3 cut(s) 98, 199, 236
MaeI CTAG 2 cut(s) 86, 864
MaeII ACGT 2 cut(s) 736, 778
MaeIII GTNAC 2 cut(s) 451, 1005
MalI GATC 3 cut(s) 243, 402, 666
MboI GATC 3 cut(s) 241, 400, 664
MboII GAAGA 5 cut(s) 107, 244, 758, 896, 1132
MfeI CAATTG 1 cut(s) 879
MhlI GDGCHC 3 cut(s) 287, 310, 794
MluCI AATT 6 cut(s) 141, 225, 435, 567, 879, 1039
MlyI GAGTC 2 cut(s) 621, 923
MmeI TCCRAC 1 cut(s) 34
Mph1103I ATGCAT 1 cut(s) 1201
MseI TTAA 1 cut(s) 671
MslI CAYNNNNRTG 2 cut(s) 554, 1244
MspI CCGG 1 cut(s) 956
MspR9I CCNGG 1 cut(s) 1029
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 1 cut(s) 1029
MvnI CGCG 1 cut(s) 691
MwoI GCNNNNNNNGC 5 cut(s) 86, 296, 305, 602, 967
NdeII GATC 3 cut(s) 241, 400, 664
NlaIII CATG 3 cut(s) 29, 68, 824
NlaIV GGNNCC 5 cut(s) 284, 285, 682, 729, 861
NmeAIII GCCGAG 1 cut(s) 971
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 1201
NspI RCATGY 1 cut(s) 68
PceI AGGCCT 1 cut(s) 1057
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfeI GAWTC 2 cut(s) 611, 975
PflMI CCANNNNNTGG 2 cut(s) 170, 737
PkrI GCNGC 7 cut(s) 82, 153, 419, 765, 1183, 1186, 1233
PleI GAGTC 2 cut(s) 621, 922
PpsI GAGTC 2 cut(s) 621, 922
Ppu21I YACGTR 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 1027
PspFI CCCAGC 2 cut(s) 163, 685
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 5 cut(s) 284, 285, 682, 729, 861
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 5 cut(s) 176, 283, 284, 860, 943
PstI CTGCAG 3 cut(s) 419, 598, 1186
RsaI GTAC 3 cut(s) 198, 267, 781
RsaNI GTAC 3 cut(s) 197, 266, 780
RseI CAYNNNNRTG 2 cut(s) 554, 1244
SaqAI TTAA 1 cut(s) 671
SatI GCNGC 7 cut(s) 81, 152, 418, 764, 1182, 1185, 1232
Sau3AI GATC 3 cut(s) 241, 400, 664
Sau96I GGNCC 5 cut(s) 176, 283, 284, 860, 943
SbfI CCTGCAGG 1 cut(s) 598
SchI GAGTC 2 cut(s) 621, 923
ScrFI CCNGG 1 cut(s) 1029
SdaI CCTGCAGG 1 cut(s) 598
SduI GDGCHC 3 cut(s) 287, 310, 794
SetI ASST 8 cut(s) 82, 432, 493, 619, 739, 781, 869, 963
SfaNI GCATC 3 cut(s) 98, 199, 236
SfcI CTRYAG 6 cut(s) 415, 594, 1001, 1068, 1164, 1182
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 554, 1244
SmlI CTYRAG 3 cut(s) 277, 1015, 1267
SmoI CTYRAG 3 cut(s) 277, 1015, 1267
Sse8387I CCTGCAGG 1 cut(s) 598
Sse9I AATT 6 cut(s) 141, 225, 435, 567, 879, 1039
SseBI AGGCCT 1 cut(s) 1057
SsiI CCGC 1 cut(s) 496
SspI AATATT 2 cut(s) 133, 927
SspMI CTAG 2 cut(s) 86, 864
StuI AGGCCT 1 cut(s) 1057
StyD4I CCNGG 1 cut(s) 1027
StyI CCWWGG 3 cut(s) 214, 649, 863
TaaI ACNGT 3 cut(s) 701, 709, 1005
TaiI ACGT 2 cut(s) 739, 781
TaqI TCGA 3 cut(s) 244, 439, 1128
TaqII GACCGA 1 cut(s) 1095
TasI AATT 6 cut(s) 141, 225, 435, 567, 879, 1039
TatI WGTACW 2 cut(s) 196, 265
TfiI GAWTC 2 cut(s) 611, 975
Tru1I TTAA 1 cut(s) 671
Tru9I TTAA 1 cut(s) 671
TscAI CASTG 2 cut(s) 637, 712
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 7 cut(s) 80, 151, 417, 763, 1181, 1184, 1231
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 4 cut(s) 45, 527, 759, 837
TspRI CASTG 2 cut(s) 637, 712
Van91I CCANNNNNTGG 2 cut(s) 170, 737
VneI GTGCAC 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 567
XceI RCATGY 1 cut(s) 68
XmaJI CCTAGG 1 cut(s) 863
XspI CTAG 2 cut(s) 86, 864
Zsp2I ATGCAT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.