Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007752

Physical Location & Seq

Genomic Coordinates Reverse (-)

22663119 .. 22677316

Gene Structure 14198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

ATGGCAACTCCAGCACTGACGCTTCATCTCTCCCGCGTCGCTCGCCACTCGCCTTTCTCTTCTCCGTTGTTCAAACCTGTTCTCTATCCTTGTGCTCGTATCGTTCCCAAGCTGCCTTTCCGCCGCAGGGTTGGCTTCAGCTGCAACCTCTCCCGGCGATTCACCGTTGCCGCCTCAATATCTCCAGACTTGAGTAATACTGGGAATCATGGACTAGATGATGAAAGATATGATGTCATTGTGGTTGGAGGAGGACATGCAGGCTGTGAAGCTGCCCTAGCATCTGCCCGTTTAGGGGCAAGAACTCTTCTCCTCACACTGAATATTGATAGAATTGCATGGCAGCCTTGCAACCCAGCAGTAGGCGGACCAGCAAAATCACAACTTGTGCATGAAGTCGATGCTCTTGGTGGGGAAATTGGGAAGATTGCTGATAGGTGCTATTTACAAAAGCGTATTCTAAATACCTCAAGGGGCCCTGCTGTTCGAGCATTGCGTGCACAAACCGATAAACGGGAATACGCTATGCAAATGAGAGAAATTGTAGAGAGTGCTCCAAACCTTTCAATTAGGGAGGCAATGGTAACAGATATCTTATTAGGAAAGAATGACGACATAGAAGGTGTACGGACATTTTTTGGGATGAACTTCTATGCTCCTTCTGTCATCCTCACGACAGGCACATTTATGAGTGGTAAAATTTGGGTTGGTAGAACTTCTATGCCTGCAGGAAGAGCTGGGGAATCAGCTTCACTTGGACTCACTGAGAACTTACAGAGACTTGGATTCGAAACTGACCGATTAAAGACTGGAACTCCAGCACGTGTTGACCGCCGCACTGTTGATTATTCTGGATTGGAACCACAACATGGTGACGAAGAGGTTGGCTGGTTTAGTTTTGATCTTGATTTCCATGTTGAAAGGGAACAAATGTGCTGCTATCTAACTCGTACCACAAAGAGCACTCACCAACTAATCAGAGAGAACTTGCATGAAACTCCCACTTATGGAGGATGGGTTGAGGCGAAGGGGCCTAGGTATTGTCCTTCAATTGAAGATAAGATTGTCCGGTTTAAGGATAAAGAATCGCATCAAATTTTTCTTGAACCAGAGGGTCGAAATGTGCCTGAGCTTTATGTGCAGGGTTTCTCAACTGGCTTACCAGAGAGACTACAATTACCACTCTTGAGGACATTACCTGGACTTGAAAACTGTTCAATGCTGAGGCCTGCTTATGCTGTAGAGTATGATTACTTGCCTGCTCATCAATGTTCTCGCTCTCTTATGACAAAGAAAATTGGTGGGCTTTTCTTTTCTGGTCAAATAAATGGAACTACGGGCTATGAAGAGGCTGCAGCTCAGGGCATTGTTTCTGGTATTAATGCTGCGAGGCACGCAGATGGTAAGTCCCTCATTGTTTTTGAGAGAGAAAGCAGCTATATAGGCACACTAATTGATGATCTAGTCACAAAGGACCTTCGAGAGCCTTACCGCATGTTAACAAGCCGCTCTGAACACCGGCTACTTCTTCGATCCGACAACGCAGATAGTCGTCTGACCCCGTTGGGCCGTGAAATTGGGTTAATAGATGATAGACGTTGGAAACTCTACCAAGACAAGCAAGCTCGAATTTCAGAAGAGAAGAAGCGATTAAAAAGTGTTCGAATTTCAGGGGGAGATCTGTCTGCTAATGTTACTAGCCTTTCAAGTCAGCCAGTGAAAGACTTTTCAACTCTGGAGAGTCTTCTTAAGAAACCACATGTAGAATATAAAGTTCTTGACAAGCATGGTTATGGGAATGAAATGTTGTCTAGAGTTGAAAAAGAATGCGTGGAGATTGACATCAAGTATGAGGGCTTCATTGTGCGCCAGCAGAACCAACTCCAACAGATGGTCCATCAACAACATAAACGACTTCCAGAGGACTTGGATTACAATGCGATAACAACATTGTCCCTTGAAGCACGCGAAAAACTCTCAAAGGTGAGACCACAAACCATTGGTCAGGCAAGCAGAGTTGGTGGGGTGAATCCTGCTGATATTACTGCTCTCCTCATTATCCTTGAAGCCAATAGGAGAATAGCATACCAAGAGAAGAGGCTCCAATTGCTAAACTCTGTGAAGACAGATGCAGATCGACACGTATCTGCAGTTTCTTTGAAGGAGACGAACAGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDA GIDA_assoc

Protein Analysis

726

Amino Acids

81.21

Weight (kDa)

8.89

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIDA	PF01134	78 - 469	6.7e-157	Glucose inhibited division protein A
FAD_oxidored	PF12831	78 - 106	1.5e-06	FAD dependent oxidoreductase
GIDA_C_1st	PF21680	531 - 625	3.9e-19	tRNA modifying enzyme MnmG/GidA C-terminal helical domain
SAM_GIDA_C	PF13932	630 - 685	5.8e-24	tRNA modifying enzyme MnmG/GidA C-terminal helical bundle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13440
fragaria_vesca	FvH4_7g05150
malus_domestica	MD02G1260800.v1.1 MD07G1060500.v1.1 MD07G1060700.v1.1
prunus_persica	Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1
pyrus_communis	pycom02g22270 pycom07g04640 pycom07g04650
rosa_chinensis	RchiOBHm_Chr1g0331701
rosa_laevigata	RLG00000029721
rosa_multiflora	Rmu_sc0004723.1_g000011 Rmu_sc0005044.1_g000002
rosa_roxburghii	Rroxscaffold_4G00318890
rosa_rugosa	Rorug01G0095700
rosa_samantha	Rh1AG119400 Rh1BG090900 Rh1CG114500 Rh1DG124900
rosa_wichuraiana	Rw1G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	869, 1891
AccBSI	CCGCTC	1 cut(s)	1509
AccII	CGCG	2 cut(s)	36, 1968
AciI	CCGC	9 cut(s)	34, 121, 124, 171, 366, 832, 835, 1492, 1507
AclWI	GGATC	1 cut(s)	1527
AcsI	RAATTY	4 cut(s)	699, 1095, 1629, 1665
AcuI	CTGAAG	1 cut(s)	121
AcvI	CACGTG	1 cut(s)	824
AfaI	GTAC	2 cut(s)	627, 952
AfiI	CCNNNNNNNGG	9 cut(s)	127, 294, 295, 362, 513, 869, 1007, 1075, 1891
AflII	CTTAAG	1 cut(s)	1748
AflIII	ACRYGT	3 cut(s)	823, 1759, 2140
AjnI	CCWGG	1 cut(s)	1198
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
Alw21I	GWGCWC	4 cut(s)	97, 502, 556, 965
Alw26I	GTCTC	4 cut(s)	772, 1162, 1981, 2159
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	1527
AoxI	GGCC	4 cut(s)	475, 1031, 1226, 1567
ApaI	GGGCCC	1 cut(s)	479
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	9 cut(s)	112, 141, 272, 343, 936, 1352, 1355, 1385, 1434
ApoI	RAATTY	4 cut(s)	699, 1095, 1629, 1665
ArsI	GACNNNNNNTTYG	2 cut(s)	1987, 2019
AseI	ATTAAT	1 cut(s)	1380
AspA2I	CCTAGG	1 cut(s)	1034
AspLEI	GCGC	1 cut(s)	1869
AspS9I	GGNCC	7 cut(s)	368, 475, 476, 1031, 1474, 1567, 1894
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	5 cut(s)	154, 884, 959, 1996, 2038
AsuII	TTCGAA	2 cut(s)	789, 1663
AvaII	GGWCC	3 cut(s)	368, 1474, 1894
AvrII	CCTAGG	1 cut(s)	1034
BaeGI	GKGCMC	2 cut(s)	479, 502
BanII	GRGCYC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	1841, 1873
BauI	CACGAG	1 cut(s)	2176
BbrPI	CACGTG	1 cut(s)	824
BbsI	GAAGAC	2 cut(s)	1736, 2129
Bbv12I	GWGCWC	4 cut(s)	97, 502, 556, 965
BbvCI	CCTCAGC	1 cut(s)	1223
BbvI	GCAGC	9 cut(s)	99, 128, 259, 355, 923, 1339, 1367, 1372, 1446
BccI	CCATC	4 cut(s)	1008, 1394, 1885, 1905
BceAI	ACGGC	1 cut(s)	1554
BciT130I	CCWGG	1 cut(s)	1200
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	4 cut(s)	772, 1162, 1981, 2159
BfaI	CTAG	6 cut(s)	215, 278, 1035, 1463, 1698, 1812
BfmI	CTRYAG	4 cut(s)	726, 1239, 1353, 2148
BfrI	CTTAAG	1 cut(s)	1748
BglII	AGATCT	1 cut(s)	1678
BlnI	CCTAGG	1 cut(s)	1034
Bme1390I	CCNGG	2 cut(s)	154, 1200
Bme18I	GGWCC	3 cut(s)	368, 1474, 1894
BmgT120I	GGNCC	7 cut(s)	368, 475, 476, 1031, 1474, 1567, 1894
BmiI	GGNNCC	5 cut(s)	476, 477, 861, 1032, 2102
BmrFI	CCNGG	2 cut(s)	154, 1200
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	4 cut(s)	290, 391, 1099, 2119
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	2 cut(s)	1736, 2129
BpmI	CTGGAG	3 cut(s)	168, 801, 1757
Bpu10I	CCTNAGC	3 cut(s)	1128, 1223, 1359
Bpu14I	TTCGAA	2 cut(s)	789, 1663
BpuEI	CTTGAG	3 cut(s)	211, 454, 1207
BpuMI	CCSGG	1 cut(s)	154
BsaAI	YACGTR	2 cut(s)	824, 2143
BsaBI	GATNNNNATC	2 cut(s)	1841, 2133
BsaI	GGTCTC	1 cut(s)	1981
BsaJI	CCNNGG	1 cut(s)	1034
BsaWI	WCCGGW	1 cut(s)	1068
BsaXI	ACNNNNNCTCC	4 cut(s)	799, 829, 1002, 1032
Bsc4I	CCNNNNNNNGG	9 cut(s)	127, 294, 295, 362, 513, 869, 1007, 1075, 1891
Bse118I	RCCGGY	1 cut(s)	1518
Bse1I	ACTGG	4 cut(s)	205, 814, 1159, 1715
Bse3DI	GCAATG	2 cut(s)	491, 585
Bse8I	GATNNNNATC	2 cut(s)	1841, 2133
BseBI	CCWGG	1 cut(s)	1200
BseDI	CCNNGG	1 cut(s)	1034
BseGI	GGATG	3 cut(s)	648, 666, 1019
BseJI	GATNNNNATC	2 cut(s)	1841, 2133
BseLI	CCNNNNNNNGG	9 cut(s)	127, 294, 295, 362, 513, 869, 1007, 1075, 1891
BseMI	GCAATG	2 cut(s)	491, 585
BseMII	CTCAG	4 cut(s)	756, 1119, 1214, 1373
BseNI	ACTGG	4 cut(s)	205, 814, 1159, 1715
BseRI	GAGGAG	3 cut(s)	264, 302, 2042
BseSI	GKGCMC	2 cut(s)	479, 502
BseXI	GCAGC	9 cut(s)	99, 128, 259, 355, 923, 1339, 1367, 1372, 1446
BseYI	CCCAGC	2 cut(s)	355, 737
BsgI	GTGCAG	1 cut(s)	1160
Bsh1236I	CGCG	2 cut(s)	36, 1968
BshFI	GGCC	4 cut(s)	477, 1033, 1228, 1569
BsiHKAI	GWGCWC	4 cut(s)	97, 502, 556, 965
BsiSI	CCGG	3 cut(s)	154, 1069, 1519
BslFI	GGGAC	2 cut(s)	1393, 1939
BslI	CCNNNNNNNGG	9 cut(s)	127, 294, 295, 362, 513, 869, 1007, 1075, 1891
BsmAI	GTCTC	4 cut(s)	772, 1162, 1981, 2159
BsmBI	CGTCTC	1 cut(s)	2159
BsmFI	GGGAC	2 cut(s)	1393, 1939
BsmI	GAATGC	1 cut(s)	1832
BsnI	GGCC	4 cut(s)	477, 1033, 1228, 1569
Bso31I	GGTCTC	1 cut(s)	1981
Bsp119I	TTCGAA	2 cut(s)	789, 1663
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	5 cut(s)	97, 479, 502, 556, 965
Bsp143I	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
BspACI	CCGC	9 cut(s)	34, 121, 124, 171, 366, 832, 835, 1492, 1507
BspANI	GGCC	4 cut(s)	477, 1033, 1228, 1569
BspCNI	CTCAG	4 cut(s)	757, 1120, 1215, 1372
BspFNI	CGCG	2 cut(s)	36, 1968
BspLI	GGNNCC	5 cut(s)	476, 477, 861, 1032, 2102
BspMAI	CTGCAG	3 cut(s)	730, 1357, 2152
BspPI	GGATC	1 cut(s)	1527
BspQI	GCTCTTC	1 cut(s)	727
BspT104I	TTCGAA	2 cut(s)	789, 1663
BspTI	CTTAAG	1 cut(s)	1748
BspTNI	GGTCTC	1 cut(s)	1981
BsrBI	CCGCTC	1 cut(s)	1509
BsrDI	GCAATG	2 cut(s)	491, 585
BsrFI	RCCGGY	1 cut(s)	1518
BsrI	ACTGG	4 cut(s)	205, 814, 1159, 1715
BssAI	RCCGGY	1 cut(s)	1518
BssECI	CCNNGG	1 cut(s)	1034
BssMI	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
BssSI	CACGAG	1 cut(s)	2176
BssT1I	CCWWGG	1 cut(s)	1034
Bst2BI	CACGAG	1 cut(s)	2176
Bst2UI	CCWGG	1 cut(s)	1200
Bst4CI	ACNGT	3 cut(s)	166, 841, 1214
Bst6I	CTCTTC	7 cut(s)	64, 312, 727, 873, 1341, 1632, 2090
BstAFI	CTTAAG	1 cut(s)	1748
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	2 cut(s)	824, 2143
BstBI	TTCGAA	2 cut(s)	789, 1663
BstDEI	CTNAG	4 cut(s)	765, 1128, 1223, 1359
BstF5I	GGATG	3 cut(s)	648, 666, 1019
BstFNI	CGCG	2 cut(s)	36, 1968
BstHHI	GCGC	1 cut(s)	1869
BstKTI	GATC	5 cut(s)	904, 1462, 1535, 1681, 2137
BstMAI	GTCTC	4 cut(s)	772, 1162, 1981, 2159
BstMBI	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
BstNI	CCWGG	1 cut(s)	1200
BstNSI	RCATGY	3 cut(s)	260, 1498, 1763
BstSCI	CCNGG	2 cut(s)	152, 1198
BstSFI	CTRYAG	4 cut(s)	726, 1239, 1353, 2148
BstSLI	GKGCMC	2 cut(s)	479, 502
BstUI	CGCG	2 cut(s)	36, 1968
BstV1I	GCAGC	9 cut(s)	99, 128, 259, 355, 923, 1339, 1367, 1372, 1446
BstV2I	GAAGAC	2 cut(s)	1736, 2129
BstX2I	RGATCY	1 cut(s)	1678
BstYI	RGATCY	1 cut(s)	1678
BsuRI	GGCC	4 cut(s)	477, 1033, 1228, 1569
BtsCI	GGATG	3 cut(s)	648, 666, 1019
BtsIMutI	CAGTG	5 cut(s)	14, 317, 762, 837, 1722
CfoI	GCGC	1 cut(s)	1869
Cfr10I	RCCGGY	1 cut(s)	1518
Cfr13I	GGNCC	7 cut(s)	368, 475, 476, 1031, 1474, 1567, 1894
CseI	GACGC	2 cut(s)	25, 28
Csp6I	GTAC	2 cut(s)	626, 951
CviQI	GTAC	2 cut(s)	626, 951
DdeI	CTNAG	4 cut(s)	765, 1128, 1223, 1359
DpnI	GATC	5 cut(s)	903, 1461, 1534, 1680, 2136
DpnII	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
Eam1104I	CTCTTC	7 cut(s)	64, 312, 727, 873, 1341, 1632, 2090
EarI	CTCTTC	7 cut(s)	64, 312, 727, 873, 1341, 1632, 2090
EciI	GGCGGA	2 cut(s)	110, 381
Eco130I	CCWWGG	1 cut(s)	1034
Eco147I	AGGCCT	1 cut(s)	1228
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	1981
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	3 cut(s)	368, 1474, 1894
Eco57I	CTGAAG	1 cut(s)	121
Eco72I	CACGTG	1 cut(s)	824
EcoO109I	RGGNCCY	4 cut(s)	475, 476, 1031, 1474
EcoRII	CCWGG	1 cut(s)	1198
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	1034
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	1034
Esp3I	CGTCTC	1 cut(s)	2159
FaqI	GGGAC	2 cut(s)	1393, 1939
FauI	CCCGC	1 cut(s)	41
FokI	GGATG	3 cut(s)	653, 655, 1026
FriOI	GRGCYC	1 cut(s)	479
FspBI	CTAG	6 cut(s)	215, 278, 1035, 1463, 1698, 1812
GlaI	GCGC	1 cut(s)	1868
GsaI	CCCAGC	2 cut(s)	359, 741
GsuI	CTGGAG	3 cut(s)	168, 801, 1757
HaeIII	GGCC	4 cut(s)	477, 1033, 1228, 1569
HapII	CCGG	3 cut(s)	154, 1069, 1519
HgaI	GACGC	2 cut(s)	25, 28
HhaI	GCGC	1 cut(s)	1869
Hin6I	GCGC	1 cut(s)	1867
HinP1I	GCGC	1 cut(s)	1867
HincII	GTYRAC	2 cut(s)	829, 1500
HindII	GTYRAC	2 cut(s)	829, 1500
HinfI	GANTC	8 cut(s)	159, 205, 743, 759, 786, 1085, 1741, 2029
HpaI	GTTAAC	1 cut(s)	1500
HpaII	CCGG	3 cut(s)	154, 1069, 1519
HphI	GGTGA	5 cut(s)	154, 884, 959, 1996, 2038
Hpy166II	GTNNAC	4 cut(s)	500, 626, 829, 1500
Hpy188I	TCNGA	5 cut(s)	980, 1513, 1537, 1557, 1636
Hpy8I	GTNNAC	4 cut(s)	500, 626, 829, 1500
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	6 cut(s)	614, 669, 1021, 1056, 1487, 2155
HpyCH4III	ACNGT	3 cut(s)	166, 841, 1214
HpyCH4IV	ACGT	3 cut(s)	823, 1597, 2142
HpyF3I	CTNAG	4 cut(s)	765, 1128, 1223, 1359
HpySE526I	ACGT	3 cut(s)	823, 1597, 2142
HspAI	GCGC	1 cut(s)	1867
KspAI	GTTAAC	1 cut(s)	1500
Kzo9I	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
LguI	GCTCTTC	1 cut(s)	727
LmnI	GCTCC	3 cut(s)	559, 661, 2106
Lsp1109I	GCAGC	9 cut(s)	99, 128, 259, 355, 923, 1339, 1367, 1372, 1446
LweI	GCATC	4 cut(s)	290, 391, 1099, 2119
MaeI	CTAG	6 cut(s)	215, 278, 1035, 1463, 1698, 1812
MaeII	ACGT	3 cut(s)	823, 1597, 2142
MaeIII	GTNAC	4 cut(s)	583, 872, 1465, 1693
MalI	GATC	5 cut(s)	903, 1461, 1534, 1680, 2136
MbiI	CCGCTC	1 cut(s)	1509
MboI	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
MfeI	CAATTG	2 cut(s)	1050, 2105
MflI	RGATCY	1 cut(s)	1678
MhlI	GDGCHC	5 cut(s)	97, 479, 502, 556, 965
MlyI	GAGTC	2 cut(s)	753, 1750
MmeI	TCCRAC	4 cut(s)	226, 1560, 1580, 1909
MseI	TTAA	7 cut(s)	803, 1074, 1380, 1499, 1583, 1652, 1749
MslI	CAYNNNNRTG	3 cut(s)	686, 1398, 1791
MspA1I	CMGCKG	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	1748
MspI	CCGG	3 cut(s)	154, 1069, 1519
MspR9I	CCNGG	2 cut(s)	154, 1200
MunI	CAATTG	2 cut(s)	1050, 2105
Mva1269I	GAATGC	1 cut(s)	1832
MvaI	CCWGG	1 cut(s)	1200
MvnI	CGCG	2 cut(s)	36, 1968
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
NlaIV	GGNNCC	5 cut(s)	476, 477, 861, 1032, 2102
NmuCI	GTSAC	2 cut(s)	872, 1465
NspI	RCATGY	3 cut(s)	260, 1498, 1763
NspV	TTCGAA	2 cut(s)	789, 1663
PceI	AGGCCT	1 cut(s)	1228
PciI	ACATGT	1 cut(s)	1759
PciSI	GCTCTTC	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	2 cut(s)	493, 2174
PctI	GAATGC	1 cut(s)	1832
PfeI	GAWTC	6 cut(s)	159, 205, 743, 786, 1085, 2029
PflMI	CCANNNNNTGG	2 cut(s)	869, 1891
PleI	GAGTC	2 cut(s)	753, 1749
PmaCI	CACGTG	1 cut(s)	824
PmlI	CACGTG	1 cut(s)	824
PpsI	GAGTC	2 cut(s)	753, 1749
Ppu21I	YACGTR	2 cut(s)	824, 2143
PpuMI	RGGWCCY	1 cut(s)	1474
PscI	ACATGT	1 cut(s)	1759
PshBI	ATTAAT	1 cut(s)	1380
Psp5II	RGGWCCY	1 cut(s)	1474
Psp6I	CCWGG	1 cut(s)	1198
PspCI	CACGTG	1 cut(s)	824
PspFI	CCCAGC	2 cut(s)	355, 737
PspGI	CCWGG	1 cut(s)	1198
PspN4I	GGNNCC	5 cut(s)	476, 477, 861, 1032, 2102
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	7 cut(s)	368, 475, 476, 1031, 1474, 1567, 1894
PspPPI	RGGWCCY	1 cut(s)	1474
PsrI	GAACNNNNNNTAC	2 cut(s)	1506, 1538
PstI	CTGCAG	3 cut(s)	730, 1357, 2152
PsuI	RGATCY	1 cut(s)	1678
PvuII	CAGCTG	1 cut(s)	141
RsaI	GTAC	2 cut(s)	627, 952
RsaNI	GTAC	2 cut(s)	626, 951
RseI	CAYNNNNRTG	3 cut(s)	686, 1398, 1791
SapI	GCTCTTC	1 cut(s)	727
SaqAI	TTAA	7 cut(s)	803, 1074, 1380, 1499, 1583, 1652, 1749
Sau3AI	GATC	5 cut(s)	901, 1459, 1532, 1678, 2134
Sau96I	GGNCC	7 cut(s)	368, 475, 476, 1031, 1474, 1567, 1894
SbfI	CCTGCAGG	1 cut(s)	730
SchI	GAGTC	2 cut(s)	753, 1750
ScrFI	CCNGG	2 cut(s)	154, 1200
SdaI	CCTGCAGG	1 cut(s)	730
SduI	GDGCHC	5 cut(s)	97, 479, 502, 556, 965
SfaNI	GCATC	4 cut(s)	290, 391, 1099, 2119
SfcI	CTRYAG	4 cut(s)	726, 1239, 1353, 2148
SfuI	TTCGAA	2 cut(s)	789, 1663
SinI	GGWCC	3 cut(s)	368, 1474, 1894
SmiMI	CAYNNNNRTG	3 cut(s)	686, 1398, 1791
SmlI	CTYRAG	4 cut(s)	190, 469, 1186, 1748
SmoI	CTYRAG	4 cut(s)	190, 469, 1186, 1748
Sse8387I	CCTGCAGG	1 cut(s)	730
SseBI	AGGCCT	1 cut(s)	1228
SsiI	CCGC	9 cut(s)	34, 121, 124, 171, 366, 832, 835, 1492, 1507
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	6 cut(s)	215, 278, 1035, 1463, 1698, 1812
StuI	AGGCCT	1 cut(s)	1228
StyD4I	CCNGG	2 cut(s)	152, 1198
StyI	CCWWGG	1 cut(s)	1034
TaaI	ACNGT	3 cut(s)	166, 841, 1214
TaiI	ACGT	3 cut(s)	826, 1600, 2145
TaqI	TCGA	9 cut(s)	399, 487, 789, 1117, 1480, 1531, 1627, 1663, 2137
TaqII	GACCGA	1 cut(s)	813
TauI	GCSGC	4 cut(s)	126, 173, 837, 1509
TfiI	GAWTC	6 cut(s)	159, 205, 743, 786, 1085, 2029
Tru1I	TTAA	7 cut(s)	803, 1074, 1380, 1499, 1583, 1652, 1749
Tru9I	TTAA	7 cut(s)	803, 1074, 1380, 1499, 1583, 1652, 1749
TscAI	CASTG	5 cut(s)	21, 324, 769, 844, 1722
TseFI	GTSAC	2 cut(s)	872, 1465
TseI	GCWGC	9 cut(s)	112, 141, 272, 343, 936, 1352, 1355, 1385, 1434
Tsp45I	GTSAC	2 cut(s)	872, 1465
TspDTI	ATGAA	8 cut(s)	14, 237, 408, 659, 1008, 1359, 1815, 1849
TspGWI	ACGGA	2 cut(s)	54, 643
TspRI	CASTG	5 cut(s)	21, 324, 769, 844, 1722
Van91I	CCANNNNNTGG	2 cut(s)	869, 1891
Vha464I	CTTAAG	1 cut(s)	1748
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	3 cut(s)	368, 1474, 1894
VspI	ATTAAT	1 cut(s)	1380
XapI	RAATTY	4 cut(s)	699, 1095, 1629, 1665
XbaI	TCTAGA	1 cut(s)	1811
XceI	RCATGY	3 cut(s)	260, 1498, 1763
XmaJI	CCTAGG	1 cut(s)	1034
XspI	CTAG	6 cut(s)	215, 278, 1035, 1463, 1698, 1812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.