Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007752

Physical Location & Seq

Genomic Coordinates Forward (+)

3986137 .. 3991875

Gene Structure 5739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGACCACGCCAGCACTGACGCTTCATCTCTCTCGCCTCGTCCGCCACTTCCCTTTCTCTTCTTCTCCTCTCCCGACTCCTTTTCACTTTCCTCGTGCTCGACTCCTTCTCAGGCTGCCTGACCTGCCCTTCCGCCGCACCCGTTCCTTCTCCACCTTCAACTTTTCCCGCCGATTCTCTGTTGCTGCCTCGGCCGGCCCAGGTCTAAGTGATGATGGGATACATGATGAAAGATATGATGTCATTGTGGTTGGAGGAGGACATGCAGGCTGTGAAGCTGCCCTAGCATCTGCTCATTTAGGGGCGAAAACTCTTCTACTCACCCTAAATATTGATAGAATTGCTTGGCAGCCCTGCAACCCAGCAGTTGGTGGACCAGCAAAGTCTCAACTTGTACACGAAGTGGATGCCCTTGGTGGTGAAATTGGGAAGATTTCTGATCGGTGCTATTTACAAAAGCGTGTACTCAATGCCTCAAGGGGCCCTGCTGTTCGGGCATTGCGTGCACAGACTGATAAACGGGAATATGCTATGGAAATGAGAAAAATAGTAGAGAGCACACCAAACCTTTCAATTCGAGAGGCAATGGTGACAGATATCTTATTAGGAAAGAATGACAATGTTGAAGGTGTGCGGACATTCTTTGGGATGAACTTCTATGCTCCTTCAGTTATTCTCACGACAGGCACATTTATGAGTGGTAAAATTTGGGTTGGTAGAACTTCTATGCCTGCAGGAAGAGCTGGCGAATCAGCTTCACTTGGACTCACTGAAAACTTACAGCGCCTTGGATTTGAAACTGACCGGTTAAAGACTGGAACCCCAGCGCGTGTGGACTGTCGCACTGTTGATTTTTCTGGATTGGAACCACAACGTGGCGATGAAGAGGTTGGCTGGTTTAGTTTTGATCTTGATCTTAGTCCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0071704 GO:0090304 GO:0097159 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDA GIDA_assoc

Protein Analysis

311

Amino Acids

33.95

Weight (kDa)

9.13

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13440
fragaria_vesca	FvH4_7g05150
malus_domestica	MD02G1260800.v1.1 MD07G1060500.v1.1 MD07G1060700.v1.1
prunus_persica	Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1
pyrus_communis	pycom02g22270 pycom07g04640 pycom07g04650
rosa_chinensis	RchiOBHm_Chr1g0331701
rosa_laevigata	RLG00000029721
rosa_multiflora	Rmu_sc0004723.1_g000011 Rmu_sc0005044.1_g000002
rosa_roxburghii	Rroxscaffold_4G00318890
rosa_rugosa	Rorug01G0095700
rosa_samantha	Rh1AG119400 Rh1BG090900 Rh1CG114500 Rh1DG124900
rosa_wichuraiana	Rw1G009650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	135
AccB7I	CCANNNNNTGG	2 cut(s)	371, 878
AccII	CGCG	1 cut(s)	832
AciI	CCGC	5 cut(s)	46, 136, 139, 172, 637
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	708
AcuI	CTGAAG	1 cut(s)	654
AdeI	CACNNNGTG	2 cut(s)	406, 878
AfaI	GTAC	2 cut(s)	399, 468
AfiI	CCNNNNNNNGG	2 cut(s)	371, 878
AgeI	ACCGGT	1 cut(s)	807
AgsI	TTSAA	4 cut(s)	163, 576, 629, 800
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	281, 746, 758
AluI	AGCT	3 cut(s)	281, 746, 758
Alw21I	GWGCWC	3 cut(s)	103, 511, 563
Alw26I	GTCTC	1 cut(s)	393
Alw44I	GTGCAC	1 cut(s)	507
AoxI	GGCC	3 cut(s)	195, 199, 484
ApaI	GGGCCC	1 cut(s)	488
ApaLI	GTGCAC	1 cut(s)	507
ApeKI	GCWGC	4 cut(s)	118, 188, 281, 352
ApoI	RAATTY	1 cut(s)	708
AsiGI	ACCGGT	1 cut(s)	807
AspLEI	GCGC	2 cut(s)	789, 832
AspS9I	GGNCC	4 cut(s)	200, 377, 484, 485
AsuHPI	GGTGA	3 cut(s)	316, 434, 604
AvaII	GGWCC	1 cut(s)	377
BaeGI	GKGCMC	2 cut(s)	488, 511
BanII	GRGCYC	1 cut(s)	488
BauI	CACGAG	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	103, 511, 563
BbvI	GCAGC	4 cut(s)	105, 175, 268, 364
BccI	CCATC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	790
BfuAI	ACCTGC	1 cut(s)	135
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	5 cut(s)	119, 139, 189, 282, 353
BlsI	GCNGC	5 cut(s)	120, 140, 190, 283, 354
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	4 cut(s)	200, 377, 484, 485
BmiI	GGNNCC	4 cut(s)	485, 486, 823, 870
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	299, 400
BpuEI	CTTGAG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	915
BsaJI	CCNNGG	4 cut(s)	192, 202, 415, 790
BsaWI	WCCGGW	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 878
Bse118I	RCCGGY	2 cut(s)	197, 807
Bse1I	ACTGG	1 cut(s)	823
Bse3DI	GCAATG	2 cut(s)	500, 594
Bse8I	GATNNNNATC	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	4 cut(s)	192, 202, 415, 790
BseGI	GGATG	2 cut(s)	415, 657
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	2 cut(s)	371, 878
BseMI	GCAATG	2 cut(s)	500, 594
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	2 cut(s)	60, 273
BseSI	GKGCMC	2 cut(s)	488, 511
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	4 cut(s)	105, 175, 268, 364
BseYI	CCCAGC	2 cut(s)	364, 826
Bsh1236I	CGCG	1 cut(s)	832
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	197, 201, 486
BshTI	ACCGGT	1 cut(s)	807
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	3 cut(s)	103, 511, 563
BsiSI	CCGG	2 cut(s)	198, 808
BslI	CCNNNNNNNGG	2 cut(s)	371, 878
BsmAI	GTCTC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	197, 201, 486
Bsp120I	GGGCCC	1 cut(s)	484
Bsp1286I	GDGCHC	4 cut(s)	103, 488, 511, 563
Bsp1407I	TGTACA	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	442, 910, 916
BspACI	CCGC	5 cut(s)	46, 136, 139, 172, 637
BspANI	GGCC	3 cut(s)	197, 201, 486
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	832
BspLI	GGNNCC	4 cut(s)	485, 486, 823, 870
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	135
BspQI	GCTCTTC	1 cut(s)	736
BsrDI	GCAATG	2 cut(s)	500, 594
BsrFI	RCCGGY	2 cut(s)	197, 807
BsrGI	TGTACA	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	823
BssAI	RCCGGY	2 cut(s)	197, 807
BssECI	CCNNGG	4 cut(s)	192, 202, 415, 790
BssMI	GATC	3 cut(s)	442, 910, 916
BssSI	CACGAG	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	415, 790
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	842, 850
Bst6I	CTCTTC	4 cut(s)	67, 321, 736, 882
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	397
BstC8I	GCNNGC	6 cut(s)	15, 199, 271, 507, 735, 748
BstDEI	CTNAG	3 cut(s)	113, 209, 920
BstF5I	GGATG	2 cut(s)	415, 657
BstFNI	CGCG	1 cut(s)	832
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	2 cut(s)	789, 832
BstKTI	GATC	3 cut(s)	445, 913, 919
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	3 cut(s)	442, 910, 916
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 127, 194, 287, 497, 506, 743
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	2 cut(s)	488, 511
BstUI	CGCG	1 cut(s)	832
BstV1I	GCAGC	4 cut(s)	105, 175, 268, 364
BstZI	CGGCCG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	197, 201, 486
BtgZI	GCGATG	1 cut(s)	897
BtsCI	GGATG	2 cut(s)	415, 657
BtsIMutI	CAGTG	3 cut(s)	17, 771, 846
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	6 cut(s)	15, 199, 271, 507, 735, 748
CfoI	GCGC	2 cut(s)	789, 832
Cfr10I	RCCGGY	2 cut(s)	197, 807
Cfr13I	GGNCC	4 cut(s)	200, 377, 484, 485
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	398, 467
CspAI	ACCGGT	1 cut(s)	807
CviAII	CATG	2 cut(s)	227, 266
CviQI	GTAC	2 cut(s)	398, 467
DdeI	CTNAG	3 cut(s)	113, 209, 920
DpnI	GATC	3 cut(s)	444, 912, 918
DpnII	GATC	3 cut(s)	442, 910, 916
DraIII	CACNNNGTG	2 cut(s)	406, 878
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	4 cut(s)	67, 321, 736, 882
EarI	CTCTTC	4 cut(s)	67, 321, 736, 882
EciI	GGCGGA	2 cut(s)	35, 125
EclXI	CGGCCG	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	415, 790
Eco24I	GRGCYC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	377
Eco52I	CGGCCG	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	654
EcoO109I	RGGNCCY	2 cut(s)	484, 485
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	2 cut(s)	415, 790
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	2 cut(s)	415, 790
FaeI	CATG	2 cut(s)	230, 269
FaiI	YATR	9 cut(s)	228, 240, 267, 531, 536, 663, 698, 731, 928
FatI	CATG	2 cut(s)	226, 265
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	5 cut(s)	119, 139, 189, 282, 353
FokI	GGATG	2 cut(s)	422, 664
FriOI	GRGCYC	1 cut(s)	488
FseI	GGCCGGCC	1 cut(s)	201
Fsp4HI	GCNGC	5 cut(s)	119, 139, 189, 282, 353
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	2 cut(s)	788, 831
GluI	GCNGC	5 cut(s)	119, 139, 189, 282, 353
GsaI	CCCAGC	2 cut(s)	368, 830
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	3 cut(s)	197, 201, 486
HapII	CCGG	2 cut(s)	198, 808
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	789, 832
Hin1II	CATG	2 cut(s)	230, 269
Hin6I	GCGC	2 cut(s)	787, 830
HinP1I	GCGC	2 cut(s)	787, 830
HinfI	GANTC	5 cut(s)	79, 105, 177, 752, 768
HpaII	CCGG	2 cut(s)	198, 808
HphI	GGTGA	3 cut(s)	316, 434, 604
Hpy166II	GTNNAC	5 cut(s)	377, 400, 467, 509, 838
Hpy188I	TCNGA	1 cut(s)	442
Hpy188III	TCNNGA	5 cut(s)	76, 581, 682, 861, 914
Hpy8I	GTNNAC	5 cut(s)	377, 400, 467, 509, 838
HpyAV	CCTTC	6 cut(s)	119, 142, 160, 169, 623, 678
HpyCH4III	ACNGT	2 cut(s)	842, 850
HpyCH4IV	ACGT	1 cut(s)	877
HpyCH4V	TGCA	4 cut(s)	269, 360, 509, 737
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 127, 194, 287, 497, 506, 743
HpyF3I	CTNAG	3 cut(s)	113, 209, 920
HpySE526I	ACGT	1 cut(s)	877
Hsp92II	CATG	2 cut(s)	230, 269
HspAI	GCGC	2 cut(s)	787, 830
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	442, 910, 916
LguI	GCTCTTC	1 cut(s)	736
LmnI	GCTCC	1 cut(s)	670
Lsp1109I	GCAGC	4 cut(s)	105, 175, 268, 364
LweI	GCATC	2 cut(s)	299, 400
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	877
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	3 cut(s)	444, 912, 918
MboI	GATC	3 cut(s)	442, 910, 916
MboII	GAAGA	6 cut(s)	54, 57, 308, 445, 753, 899
MhlI	GDGCHC	4 cut(s)	103, 488, 511, 563
MluCI	AATT	4 cut(s)	342, 426, 576, 708
MlyI	GAGTC	3 cut(s)	73, 99, 762
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	9 cut(s)	50, 81, 105, 202, 251, 254, 487, 577, 883
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	1 cut(s)	812
MslI	CAYNNNNRTG	1 cut(s)	695
MspI	CCGG	2 cut(s)	198, 808
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	832
MwoI	GCNNNNNNNGC	7 cut(s)	45, 127, 194, 287, 497, 506, 743
NaeI	GCCGGC	1 cut(s)	199
NdeII	GATC	3 cut(s)	442, 910, 916
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	230, 269
NlaIV	GGNNCC	4 cut(s)	485, 486, 823, 870
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	177, 752
PflMI	CCANNNNNTGG	2 cut(s)	371, 878
PinAI	ACCGGT	1 cut(s)	807
PkrI	GCNGC	5 cut(s)	120, 140, 190, 283, 354
PleI	GAGTC	3 cut(s)	73, 99, 762
PpsI	GAGTC	3 cut(s)	73, 99, 762
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	2 cut(s)	364, 826
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	4 cut(s)	485, 486, 823, 870
PspOMI	GGGCCC	1 cut(s)	484
PspPI	GGNCC	4 cut(s)	200, 377, 484, 485
PstI	CTGCAG	1 cut(s)	739
RigI	GGCCGGCC	1 cut(s)	201
RsaI	GTAC	2 cut(s)	399, 468
RsaNI	GTAC	2 cut(s)	398, 467
RseI	CAYNNNNRTG	1 cut(s)	695
SapI	GCTCTTC	1 cut(s)	736
SaqAI	TTAA	1 cut(s)	812
SatI	GCNGC	5 cut(s)	119, 139, 189, 282, 353
Sau3AI	GATC	3 cut(s)	442, 910, 916
Sau96I	GGNCC	4 cut(s)	200, 377, 484, 485
SbfI	CCTGCAGG	1 cut(s)	739
SchI	GAGTC	3 cut(s)	73, 99, 762
ScrFI	CCNGG	1 cut(s)	204
SdaI	CCTGCAGG	1 cut(s)	739
SduI	GDGCHC	4 cut(s)	103, 488, 511, 563
SfaNI	GCATC	2 cut(s)	299, 400
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse8387I	CCTGCAGG	1 cut(s)	739
Sse9I	AATT	4 cut(s)	342, 426, 576, 708
SsiI	CCGC	5 cut(s)	46, 136, 139, 172, 637
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	2 cut(s)	415, 790
TaaI	ACNGT	2 cut(s)	842, 850
TaiI	ACGT	1 cut(s)	880
TaqI	TCGA	2 cut(s)	103, 580
TasI	AATT	4 cut(s)	342, 426, 576, 708
TatI	WGTACW	2 cut(s)	397, 466
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	177, 752
Tru1I	TTAA	1 cut(s)	812
Tru9I	TTAA	1 cut(s)	812
TscAI	CASTG	3 cut(s)	24, 778, 853
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	118, 188, 281, 352
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	17, 246, 668, 900
TspRI	CASTG	3 cut(s)	24, 778, 853
Van91I	CCANNNNNTGG	2 cut(s)	371, 878
VneI	GTGCAC	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	708
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.