pycom02g22270

tRNA uridine 5-carboxymethylaminomethyl modification enzyme

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
20414421 .. 20423036
8616 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g22270.8

Sequence Viewer

Length: 1197 bp
ATGGCGACCACGCCAGCACTGACGCTTCATCTCTCTCGCCTCGCCCGCCACTTCCCTTTCTCCTCTTCTCCTCTCCCGACTCCTCCTCTCTTTCATCGTGCTCGACTCATTCTAAGGCCGCGTAACCTTCCCTTCCGCCGCACCCGTTCCTTCTCCACCTGCAACTTTTCCCGCCGATTCTCTGTCTCCGCCTCGACCACTCCAGGTCTAAGTGATGATGGGATACATGATGAAAGATATGATGTCATTGTGGTCGGAGGAGGACATGCAGGCTGTGAAGCTGCCCTAGCATCTGCTCATTTAGGGGCGAAAACTCTTCTACTCACCCTAAATATTGATAGAATTGCTTGGCAGCCCTGCAACCCAGCAGTTGGTGGACCAGCAAAGTCTCAACTTGTACACGAAGTGGATGCCCTTGGTGGTGAAATTGGGAAGATTTCTGATCGGTGCTATTTACAGAAGCGTGTACTCAATGCCTCAAGGGGCCCTGCTGTTCGGGCATTGCGTGCACAGACTGATAAACGGGAATATGCCATGGAAATGAGAAAAATAGTAGAGAGCACACCAAACCTTTCAATTCGAGAGGCAATGGTGACAGATATCTTATTAGGAAAGAATGACAATATTGAAGGTGTGCAAACATTTTTTGGGATGAACTTCTACGCTCCTTCAGTTATTCTCACGACGGGCACATTTATGAGTGGTAAAATTTGGGTTGGTAGAACTTCTATGCCTGCAGGAAGAGCTGGCGAATCAGCTTCACTCGGACTGACTGAAAATTTACAGTGCCTTGGATTTGAGACTGATCGATTAAAGACTGGAACCCCAGCGCGTGTGGACCGTCGCACTGTTGATTTTTCTGGATTGGAACCACAACATGGCGATGAAGAGGTTGGCTGGTTTAGTTTTGATCTTGATGTCCATATTGAAAGGGAACAAATGTGCTGCTATCTTACGCGTACTACAAAGAGCACTCACCAACTAATCAAAGACAACTTGCGTGAAACTCCTACTTATGGAGGATGGGTTGAGGCGAAGGGGCCTAGGTATTGCCCTTCAATTGAAGACAAATTGTTCGGTTCCAGGATAAAGAGTCCCATCAAATTTTTCTTGAACCAGAGGGCCGAGATGTGCCGGAGCTTTATGTGCAGGGATTCTCAACTGGTTTACCAGAGAGACTACAGTTACCACTCTTGA

Protein Analysis

399

Amino Acids

44.44

Weight (kDa)

9.15

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 167
AccB7I CCANNNNNTGG 2 cut(s) 371, 878
AccII CGCG 3 cut(s) 121, 832, 958
AciI CCGC 6 cut(s) 46, 119, 136, 139, 172, 189
AcsI RAATTY 3 cut(s) 708, 778, 1103
AcuI CTGAAG 1 cut(s) 654
AdeI CACNNNGTG 1 cut(s) 406
AfaI GTAC 3 cut(s) 399, 468, 961
AfiI CCNNNNNNNGG 3 cut(s) 371, 878, 1016
AflIII ACRYGT 1 cut(s) 956
AgsI TTSAA 6 cut(s) 576, 629, 929, 1059, 1064, 1114
AjnI CCWGG 2 cut(s) 202, 1082
AluBI AGCT 4 cut(s) 281, 746, 758, 1140
AluI AGCT 4 cut(s) 281, 746, 758, 1140
Alw21I GWGCWC 4 cut(s) 103, 511, 563, 974
Alw26I GTCTC 4 cut(s) 190, 393, 794, 1170
Alw44I GTGCAC 1 cut(s) 507
AoxI GGCC 4 cut(s) 116, 484, 1040, 1122
ApaI GGGCCC 1 cut(s) 488
ApaLI GTGCAC 1 cut(s) 507
ApeKI GCWGC 3 cut(s) 281, 352, 945
ApoI RAATTY 3 cut(s) 708, 778, 1103
ArsI GACNNNNNNTTYG 2 cut(s) 1058, 1090
AspA2I CCTAGG 1 cut(s) 1043
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 6 cut(s) 377, 484, 485, 838, 1040, 1122
AsuHPI GGTGA 4 cut(s) 316, 434, 604, 968
AvaII GGWCC 2 cut(s) 377, 838
AvrII CCTAGG 1 cut(s) 1043
BaeGI GKGCMC 3 cut(s) 488, 511, 692
BanII GRGCYC 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 1071
Bbv12I GWGCWC 4 cut(s) 103, 511, 563, 974
BbvI GCAGC 3 cut(s) 268, 364, 932
BccI CCATC 3 cut(s) 212, 1017, 1106
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 2 cut(s) 204, 1084
BciVI GTATCC 1 cut(s) 216
BcoDI GTCTC 4 cut(s) 190, 393, 794, 1170
BfaI CTAG 2 cut(s) 287, 1044
BfmI CTRYAG 2 cut(s) 735, 1180
BfuAI ACCTGC 1 cut(s) 167
BfuI GTATCC 1 cut(s) 216
BisI GCNGC 5 cut(s) 119, 139, 282, 353, 946
BlnI CCTAGG 1 cut(s) 1043
BlsI GCNGC 5 cut(s) 120, 140, 283, 354, 947
Bme1390I CCNGG 2 cut(s) 204, 1084
Bme18I GGWCC 2 cut(s) 377, 838
BmgT120I GGNCC 6 cut(s) 377, 484, 485, 838, 1040, 1122
BmiI GGNNCC 6 cut(s) 485, 486, 823, 870, 1041, 1081
BmrFI CCNGG 2 cut(s) 204, 1084
BmsI GCATC 2 cut(s) 299, 400
BpiI GAAGAC 1 cut(s) 1071
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 808
BsaJI CCNNGG 4 cut(s) 415, 534, 790, 1043
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 3 cut(s) 371, 878, 1016
Bse1I ACTGG 2 cut(s) 823, 1167
Bse3DI GCAATG 2 cut(s) 500, 594
BseBI CCWGG 2 cut(s) 204, 1084
BseCI ATCGAT 1 cut(s) 808
BseDI CCNNGG 4 cut(s) 415, 534, 790, 1043
BseGI GGATG 3 cut(s) 415, 657, 1028
BseLI CCNNNNNNNGG 3 cut(s) 371, 878, 1016
BseMI GCAATG 2 cut(s) 500, 594
BseNI ACTGG 2 cut(s) 823, 1167
BseRI GAGGAG 5 cut(s) 52, 60, 72, 75, 273
BseSI GKGCMC 3 cut(s) 488, 511, 692
BseXI GCAGC 3 cut(s) 268, 364, 932
BseYI CCCAGC 2 cut(s) 364, 826
BsgI GTGCAG 1 cut(s) 1168
Bsh1236I CGCG 3 cut(s) 121, 832, 958
BshFI GGCC 4 cut(s) 118, 486, 1042, 1124
BshVI ATCGAT 1 cut(s) 808
BsiHKAI GWGCWC 4 cut(s) 103, 511, 563, 974
BsiSI CCGG 1 cut(s) 1135
BslFI GGGAC 1 cut(s) 1080
BslI CCNNNNNNNGG 3 cut(s) 371, 878, 1016
BsmAI GTCTC 4 cut(s) 190, 393, 794, 1170
BsmFI GGGAC 1 cut(s) 1080
BsnI GGCC 4 cut(s) 118, 486, 1042, 1124
Bsp120I GGGCCC 1 cut(s) 484
Bsp1286I GDGCHC 6 cut(s) 103, 488, 511, 563, 692, 974
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 3 cut(s) 442, 805, 910
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 6 cut(s) 46, 119, 136, 139, 172, 189
BspANI GGCC 4 cut(s) 118, 486, 1042, 1124
BspDI ATCGAT 1 cut(s) 808
BspFNI CGCG 3 cut(s) 121, 832, 958
BspLI GGNNCC 6 cut(s) 485, 486, 823, 870, 1041, 1081
BspMAI CTGCAG 1 cut(s) 739
BspMI ACCTGC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 736
BsrDI GCAATG 2 cut(s) 500, 594
BsrGI TGTACA 1 cut(s) 397
BsrI ACTGG 2 cut(s) 823, 1167
BssECI CCNNGG 4 cut(s) 415, 534, 790, 1043
BssMI GATC 3 cut(s) 442, 805, 910
BssT1I CCWWGG 4 cut(s) 415, 534, 790, 1043
Bst2UI CCWGG 2 cut(s) 204, 1084
Bst4CI ACNGT 4 cut(s) 786, 842, 850, 1184
Bst6I CTCTTC 4 cut(s) 70, 321, 736, 882
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 6 cut(s) 15, 46, 271, 507, 735, 748
BstDEI CTNAG 2 cut(s) 113, 209
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 3 cut(s) 415, 657, 1028
BstFNI CGCG 3 cut(s) 121, 832, 958
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 3 cut(s) 445, 808, 913
BstMAI GTCTC 4 cut(s) 190, 393, 794, 1170
BstMBI GATC 3 cut(s) 442, 805, 910
BstMWI GCNNNNNNNGC 6 cut(s) 45, 287, 497, 506, 743, 1146
BstNI CCWGG 2 cut(s) 204, 1084
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 202, 1082
BstSFI CTRYAG 2 cut(s) 735, 1180
BstSLI GKGCMC 3 cut(s) 488, 511, 692
BstUI CGCG 3 cut(s) 121, 832, 958
BstV1I GCAGC 3 cut(s) 268, 364, 932
BstV2I GAAGAC 1 cut(s) 1071
Bsu15I ATCGAT 1 cut(s) 808
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 4 cut(s) 118, 486, 1042, 1124
BsuTUI ATCGAT 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 534
BtgZI GCGATG 1 cut(s) 897
BtsCI GGATG 3 cut(s) 415, 657, 1028
BtsIMutI CAGTG 3 cut(s) 17, 791, 846
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 6 cut(s) 15, 46, 271, 507, 735, 748
CfoI GCGC 1 cut(s) 832
Cfr13I GGNCC 6 cut(s) 377, 484, 485, 838, 1040, 1122
ClaI ATCGAT 1 cut(s) 808
CseI GACGC 1 cut(s) 31
Csp6I GTAC 3 cut(s) 398, 467, 960
CviAII CATG 4 cut(s) 227, 266, 535, 878
CviQI GTAC 3 cut(s) 398, 467, 960
DdeI CTNAG 2 cut(s) 113, 209
DpnI GATC 3 cut(s) 444, 807, 912
DpnII GATC 3 cut(s) 442, 805, 910
DraIII CACNNNGTG 1 cut(s) 406
Eam1104I CTCTTC 4 cut(s) 70, 321, 736, 882
EarI CTCTTC 4 cut(s) 70, 321, 736, 882
EciI GGCGGA 2 cut(s) 125, 178
Eco130I CCWWGG 4 cut(s) 415, 534, 790, 1043
Eco24I GRGCYC 1 cut(s) 488
Eco32I GATATC 1 cut(s) 601
Eco47I GGWCC 2 cut(s) 377, 838
Eco57I CTGAAG 1 cut(s) 654
EcoO109I RGGNCCY 3 cut(s) 484, 485, 1040
EcoRII CCWGG 2 cut(s) 202, 1082
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 4 cut(s) 415, 534, 790, 1043
EcoT38I GRGCYC 1 cut(s) 488
ErhI CCWWGG 4 cut(s) 415, 534, 790, 1043
FaeI CATG 4 cut(s) 230, 269, 538, 881
FaqI GGGAC 1 cut(s) 1080
FatI CATG 4 cut(s) 226, 265, 534, 877
FauI CCCGC 2 cut(s) 53, 179
Fnu4HI GCNGC 5 cut(s) 119, 139, 282, 353, 946
FokI GGATG 3 cut(s) 422, 664, 1035
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 5 cut(s) 119, 139, 282, 353, 946
FspBI CTAG 2 cut(s) 287, 1044
GlaI GCGC 1 cut(s) 831
GluI GCNGC 5 cut(s) 119, 139, 282, 353, 946
GsaI CCCAGC 2 cut(s) 368, 830
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 4 cut(s) 118, 486, 1042, 1124
HapII CCGG 1 cut(s) 1135
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 832
Hin1II CATG 4 cut(s) 230, 269, 538, 881
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HinfI GANTC 6 cut(s) 79, 105, 177, 752, 1093, 1154
HpaII CCGG 1 cut(s) 1135
HphI GGTGA 4 cut(s) 316, 434, 604, 968
Hpy166II GTNNAC 6 cut(s) 377, 400, 467, 509, 838, 1168
Hpy188I TCNGA 3 cut(s) 257, 442, 767
Hpy188III TCNNGA 7 cut(s) 76, 581, 682, 861, 914, 1111, 1194
Hpy8I GTNNAC 6 cut(s) 377, 400, 467, 509, 838, 1168
Hpy99I CGWCG 2 cut(s) 688, 846
HpyAV CCTTC 7 cut(s) 137, 142, 160, 623, 678, 1030, 1065
HpyCH4III ACNGT 4 cut(s) 786, 842, 850, 1184
HpyCH4V TGCA 7 cut(s) 162, 269, 360, 509, 637, 737, 1149
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 287, 497, 506, 743, 1146
HpyF3I CTNAG 2 cut(s) 113, 209
Hsp92II CATG 4 cut(s) 230, 269, 538, 881
HspAI GCGC 1 cut(s) 830
Kzo9I GATC 3 cut(s) 442, 805, 910
LguI GCTCTTC 1 cut(s) 736
LmnI GCTCC 2 cut(s) 670, 1137
Lsp1109I GCAGC 3 cut(s) 268, 364, 932
LweI GCATC 2 cut(s) 299, 400
MaeI CTAG 2 cut(s) 287, 1044
MaeIII GTNAC 3 cut(s) 122, 592, 1184
MalI GATC 3 cut(s) 444, 807, 912
MboI GATC 3 cut(s) 442, 805, 910
MboII GAAGA 6 cut(s) 57, 308, 445, 753, 899, 1076
MfeI CAATTG 1 cut(s) 1059
MhlI GDGCHC 6 cut(s) 103, 488, 511, 563, 692, 974
MluCI AATT 8 cut(s) 342, 426, 576, 708, 778, 1059, 1070, 1103
MluI ACGCGT 1 cut(s) 956
MlyI GAGTC 3 cut(s) 73, 99, 1102
MmeI TCCRAC 1 cut(s) 235
MseI TTAA 1 cut(s) 812
MslI CAYNNNNRTG 3 cut(s) 539, 695, 882
MspI CCGG 1 cut(s) 1135
MspR9I CCNGG 2 cut(s) 204, 1084
MunI CAATTG 1 cut(s) 1059
MvaI CCWGG 2 cut(s) 204, 1084
MvnI CGCG 3 cut(s) 121, 832, 958
MwoI GCNNNNNNNGC 6 cut(s) 45, 287, 497, 506, 743, 1146
NcoI CCATGG 1 cut(s) 534
NdeII GATC 3 cut(s) 442, 805, 910
NlaIII CATG 4 cut(s) 230, 269, 538, 881
NlaIV GGNNCC 6 cut(s) 485, 486, 823, 870, 1041, 1081
NmeAIII GCCGAG 1 cut(s) 1150
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 1 cut(s) 269
PaqCI CACCTGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PfeI GAWTC 3 cut(s) 177, 752, 1154
PflMI CCANNNNNTGG 2 cut(s) 371, 878
PfoI TCCNGGA 1 cut(s) 1082
PkrI GCNGC 5 cut(s) 120, 140, 283, 354, 947
PleI GAGTC 3 cut(s) 73, 99, 1101
PpsI GAGTC 3 cut(s) 73, 99, 1101
Psp6I CCWGG 2 cut(s) 202, 1082
PspFI CCCAGC 2 cut(s) 364, 826
PspGI CCWGG 2 cut(s) 202, 1082
PspN4I GGNNCC 6 cut(s) 485, 486, 823, 870, 1041, 1081
PspOMI GGGCCC 1 cut(s) 484
PspPI GGNCC 6 cut(s) 377, 484, 485, 838, 1040, 1122
PstI CTGCAG 1 cut(s) 739
RsaI GTAC 3 cut(s) 399, 468, 961
RsaNI GTAC 3 cut(s) 398, 467, 960
RseI CAYNNNNRTG 3 cut(s) 539, 695, 882
SapI GCTCTTC 1 cut(s) 736
SaqAI TTAA 1 cut(s) 812
SatI GCNGC 5 cut(s) 119, 139, 282, 353, 946
Sau3AI GATC 3 cut(s) 442, 805, 910
Sau96I GGNCC 6 cut(s) 377, 484, 485, 838, 1040, 1122
SbfI CCTGCAGG 1 cut(s) 739
SchI GAGTC 3 cut(s) 73, 99, 1102
ScrFI CCNGG 2 cut(s) 204, 1084
SdaI CCTGCAGG 1 cut(s) 739
SduI GDGCHC 6 cut(s) 103, 488, 511, 563, 692, 974
SfaNI GCATC 2 cut(s) 299, 400
SfcI CTRYAG 2 cut(s) 735, 1180
SinI GGWCC 2 cut(s) 377, 838
SmiMI CAYNNNNRTG 3 cut(s) 539, 695, 882
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse8387I CCTGCAGG 1 cut(s) 739
Sse9I AATT 8 cut(s) 342, 426, 576, 708, 778, 1059, 1070, 1103
SsiI CCGC 6 cut(s) 46, 119, 136, 139, 172, 189
SspI AATATT 2 cut(s) 334, 625
SspMI CTAG 2 cut(s) 287, 1044
StyD4I CCNGG 2 cut(s) 202, 1082
StyI CCWWGG 4 cut(s) 415, 534, 790, 1043
TaaI ACNGT 4 cut(s) 786, 842, 850, 1184
TaqI TCGA 4 cut(s) 103, 194, 580, 808
TasI AATT 8 cut(s) 342, 426, 576, 708, 778, 1059, 1070, 1103
TatI WGTACW 2 cut(s) 397, 466
TauI GCSGC 2 cut(s) 121, 141
TfiI GAWTC 3 cut(s) 177, 752, 1154
Tru1I TTAA 1 cut(s) 812
Tru9I TTAA 1 cut(s) 812
TscAI CASTG 3 cut(s) 24, 791, 853
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 3 cut(s) 281, 352, 945
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 5 cut(s) 17, 83, 246, 668, 900
TspRI CASTG 3 cut(s) 24, 791, 853
Van91I CCANNNNNTGG 2 cut(s) 371, 878
VneI GTGCAC 1 cut(s) 507
VpaK11BI GGWCC 2 cut(s) 377, 838
XapI RAATTY 3 cut(s) 708, 778, 1103
XceI RCATGY 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 1043
XspI CTAG 2 cut(s) 287, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.