tRNA uridine 5-carboxymethylaminomethyl modification enzyme
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G13440 |
| fragaria_vesca | FvH4_7g05150 |
| malus_domestica | MD02G1260800.v1.1 MD07G1060500.v1.1 MD07G1060700.v1.1 |
| prunus_persica | Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 Prupe.5G002000_v2.0.a1 |
| pyrus_communis | pycom02g22270 pycom07g04640 pycom07g04650 |
| rosa_chinensis | RchiOBHm_Chr1g0331701 |
| rosa_laevigata | RLG00000029721 |
| rosa_multiflora | Rmu_sc0004723.1_g000011 Rmu_sc0005044.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00318890 |
| rosa_rugosa | Rorug01G0095700 |
| rosa_samantha | Rh1AG119400 Rh1BG090900 Rh1CG114500 Rh1DG124900 |
| rosa_wichuraiana | Rw1G009650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 167 |
| Acc36I | ACCTGC | 1 cut(s) | 167 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 371, 878 |
| AccII | CGCG | 3 cut(s) | 121, 832, 958 |
| AciI | CCGC | 6 cut(s) | 46, 119, 136, 139, 172, 189 |
| AcsI | RAATTY | 3 cut(s) | 708, 778, 1103 |
| AcuI | CTGAAG | 1 cut(s) | 654 |
| AdeI | CACNNNGTG | 1 cut(s) | 406 |
| AfaI | GTAC | 3 cut(s) | 399, 468, 961 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 371, 878, 1016 |
| AflIII | ACRYGT | 1 cut(s) | 956 |
| AgsI | TTSAA | 6 cut(s) | 576, 629, 929, 1059, 1064, 1114 |
| AjnI | CCWGG | 2 cut(s) | 202, 1082 |
| AluBI | AGCT | 4 cut(s) | 281, 746, 758, 1140 |
| AluI | AGCT | 4 cut(s) | 281, 746, 758, 1140 |
| Alw21I | GWGCWC | 4 cut(s) | 103, 511, 563, 974 |
| Alw26I | GTCTC | 4 cut(s) | 190, 393, 794, 1170 |
| Alw44I | GTGCAC | 1 cut(s) | 507 |
| AoxI | GGCC | 4 cut(s) | 116, 484, 1040, 1122 |
| ApaI | GGGCCC | 1 cut(s) | 488 |
| ApaLI | GTGCAC | 1 cut(s) | 507 |
| ApeKI | GCWGC | 3 cut(s) | 281, 352, 945 |
| ApoI | RAATTY | 3 cut(s) | 708, 778, 1103 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1058, 1090 |
| AspA2I | CCTAGG | 1 cut(s) | 1043 |
| AspLEI | GCGC | 1 cut(s) | 832 |
| AspS9I | GGNCC | 6 cut(s) | 377, 484, 485, 838, 1040, 1122 |
| AsuHPI | GGTGA | 4 cut(s) | 316, 434, 604, 968 |
| AvaII | GGWCC | 2 cut(s) | 377, 838 |
| AvrII | CCTAGG | 1 cut(s) | 1043 |
| BaeGI | GKGCMC | 3 cut(s) | 488, 511, 692 |
| BanII | GRGCYC | 1 cut(s) | 488 |
| BbsI | GAAGAC | 1 cut(s) | 1071 |
| Bbv12I | GWGCWC | 4 cut(s) | 103, 511, 563, 974 |
| BbvI | GCAGC | 3 cut(s) | 268, 364, 932 |
| BccI | CCATC | 3 cut(s) | 212, 1017, 1106 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 392, 426 |
| BciT130I | CCWGG | 2 cut(s) | 204, 1084 |
| BciVI | GTATCC | 1 cut(s) | 216 |
| BcoDI | GTCTC | 4 cut(s) | 190, 393, 794, 1170 |
| BfaI | CTAG | 2 cut(s) | 287, 1044 |
| BfmI | CTRYAG | 2 cut(s) | 735, 1180 |
| BfuAI | ACCTGC | 1 cut(s) | 167 |
| BfuI | GTATCC | 1 cut(s) | 216 |
| BisI | GCNGC | 5 cut(s) | 119, 139, 282, 353, 946 |
| BlnI | CCTAGG | 1 cut(s) | 1043 |
| BlsI | GCNGC | 5 cut(s) | 120, 140, 283, 354, 947 |
| Bme1390I | CCNGG | 2 cut(s) | 204, 1084 |
| Bme18I | GGWCC | 2 cut(s) | 377, 838 |
| BmgT120I | GGNCC | 6 cut(s) | 377, 484, 485, 838, 1040, 1122 |
| BmiI | GGNNCC | 6 cut(s) | 485, 486, 823, 870, 1041, 1081 |
| BmrFI | CCNGG | 2 cut(s) | 204, 1084 |
| BmsI | GCATC | 2 cut(s) | 299, 400 |
| BpiI | GAAGAC | 1 cut(s) | 1071 |
| BpmI | CTGGAG | 1 cut(s) | 186 |
| BpuEI | CTTGAG | 1 cut(s) | 463 |
| Bsa29I | ATCGAT | 1 cut(s) | 808 |
| BsaJI | CCNNGG | 4 cut(s) | 415, 534, 790, 1043 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1011, 1041 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 371, 878, 1016 |
| Bse1I | ACTGG | 2 cut(s) | 823, 1167 |
| Bse3DI | GCAATG | 2 cut(s) | 500, 594 |
| BseBI | CCWGG | 2 cut(s) | 204, 1084 |
| BseCI | ATCGAT | 1 cut(s) | 808 |
| BseDI | CCNNGG | 4 cut(s) | 415, 534, 790, 1043 |
| BseGI | GGATG | 3 cut(s) | 415, 657, 1028 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 371, 878, 1016 |
| BseMI | GCAATG | 2 cut(s) | 500, 594 |
| BseNI | ACTGG | 2 cut(s) | 823, 1167 |
| BseRI | GAGGAG | 5 cut(s) | 52, 60, 72, 75, 273 |
| BseSI | GKGCMC | 3 cut(s) | 488, 511, 692 |
| BseXI | GCAGC | 3 cut(s) | 268, 364, 932 |
| BseYI | CCCAGC | 2 cut(s) | 364, 826 |
| BsgI | GTGCAG | 1 cut(s) | 1168 |
| Bsh1236I | CGCG | 3 cut(s) | 121, 832, 958 |
| BshFI | GGCC | 4 cut(s) | 118, 486, 1042, 1124 |
| BshVI | ATCGAT | 1 cut(s) | 808 |
| BsiHKAI | GWGCWC | 4 cut(s) | 103, 511, 563, 974 |
| BsiSI | CCGG | 1 cut(s) | 1135 |
| BslFI | GGGAC | 1 cut(s) | 1080 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 371, 878, 1016 |
| BsmAI | GTCTC | 4 cut(s) | 190, 393, 794, 1170 |
| BsmFI | GGGAC | 1 cut(s) | 1080 |
| BsnI | GGCC | 4 cut(s) | 118, 486, 1042, 1124 |
| Bsp120I | GGGCCC | 1 cut(s) | 484 |
| Bsp1286I | GDGCHC | 6 cut(s) | 103, 488, 511, 563, 692, 974 |
| Bsp1407I | TGTACA | 1 cut(s) | 397 |
| Bsp143I | GATC | 3 cut(s) | 442, 805, 910 |
| Bsp19I | CCATGG | 1 cut(s) | 534 |
| BspACI | CCGC | 6 cut(s) | 46, 119, 136, 139, 172, 189 |
| BspANI | GGCC | 4 cut(s) | 118, 486, 1042, 1124 |
| BspDI | ATCGAT | 1 cut(s) | 808 |
| BspFNI | CGCG | 3 cut(s) | 121, 832, 958 |
| BspLI | GGNNCC | 6 cut(s) | 485, 486, 823, 870, 1041, 1081 |
| BspMAI | CTGCAG | 1 cut(s) | 739 |
| BspMI | ACCTGC | 1 cut(s) | 167 |
| BspQI | GCTCTTC | 1 cut(s) | 736 |
| BsrDI | GCAATG | 2 cut(s) | 500, 594 |
| BsrGI | TGTACA | 1 cut(s) | 397 |
| BsrI | ACTGG | 2 cut(s) | 823, 1167 |
| BssECI | CCNNGG | 4 cut(s) | 415, 534, 790, 1043 |
| BssMI | GATC | 3 cut(s) | 442, 805, 910 |
| BssT1I | CCWWGG | 4 cut(s) | 415, 534, 790, 1043 |
| Bst2UI | CCWGG | 2 cut(s) | 204, 1084 |
| Bst4CI | ACNGT | 4 cut(s) | 786, 842, 850, 1184 |
| Bst6I | CTCTTC | 4 cut(s) | 70, 321, 736, 882 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 506 |
| BstAUI | TGTACA | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 6 cut(s) | 15, 46, 271, 507, 735, 748 |
| BstDEI | CTNAG | 2 cut(s) | 113, 209 |
| BstDSI | CCRYGG | 1 cut(s) | 534 |
| BstF5I | GGATG | 3 cut(s) | 415, 657, 1028 |
| BstFNI | CGCG | 3 cut(s) | 121, 832, 958 |
| BstHHI | GCGC | 1 cut(s) | 832 |
| BstKTI | GATC | 3 cut(s) | 445, 808, 913 |
| BstMAI | GTCTC | 4 cut(s) | 190, 393, 794, 1170 |
| BstMBI | GATC | 3 cut(s) | 442, 805, 910 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 45, 287, 497, 506, 743, 1146 |
| BstNI | CCWGG | 2 cut(s) | 204, 1084 |
| BstNSI | RCATGY | 1 cut(s) | 269 |
| BstSCI | CCNGG | 2 cut(s) | 202, 1082 |
| BstSFI | CTRYAG | 2 cut(s) | 735, 1180 |
| BstSLI | GKGCMC | 3 cut(s) | 488, 511, 692 |
| BstUI | CGCG | 3 cut(s) | 121, 832, 958 |
| BstV1I | GCAGC | 3 cut(s) | 268, 364, 932 |
| BstV2I | GAAGAC | 1 cut(s) | 1071 |
| Bsu15I | ATCGAT | 1 cut(s) | 808 |
| BsuI | GTATCC | 1 cut(s) | 216 |
| BsuRI | GGCC | 4 cut(s) | 118, 486, 1042, 1124 |
| BsuTUI | ATCGAT | 1 cut(s) | 808 |
| BtgI | CCRYGG | 1 cut(s) | 534 |
| BtgZI | GCGATG | 1 cut(s) | 897 |
| BtsCI | GGATG | 3 cut(s) | 415, 657, 1028 |
| BtsIMutI | CAGTG | 3 cut(s) | 17, 791, 846 |
| BveI | ACCTGC | 1 cut(s) | 167 |
| Cac8I | GCNNGC | 6 cut(s) | 15, 46, 271, 507, 735, 748 |
| CfoI | GCGC | 1 cut(s) | 832 |
| Cfr13I | GGNCC | 6 cut(s) | 377, 484, 485, 838, 1040, 1122 |
| ClaI | ATCGAT | 1 cut(s) | 808 |
| CseI | GACGC | 1 cut(s) | 31 |
| Csp6I | GTAC | 3 cut(s) | 398, 467, 960 |
| CviAII | CATG | 4 cut(s) | 227, 266, 535, 878 |
| CviQI | GTAC | 3 cut(s) | 398, 467, 960 |
| DdeI | CTNAG | 2 cut(s) | 113, 209 |
| DpnI | GATC | 3 cut(s) | 444, 807, 912 |
| DpnII | GATC | 3 cut(s) | 442, 805, 910 |
| DraIII | CACNNNGTG | 1 cut(s) | 406 |
| Eam1104I | CTCTTC | 4 cut(s) | 70, 321, 736, 882 |
| EarI | CTCTTC | 4 cut(s) | 70, 321, 736, 882 |
| EciI | GGCGGA | 2 cut(s) | 125, 178 |
| Eco130I | CCWWGG | 4 cut(s) | 415, 534, 790, 1043 |
| Eco24I | GRGCYC | 1 cut(s) | 488 |
| Eco32I | GATATC | 1 cut(s) | 601 |
| Eco47I | GGWCC | 2 cut(s) | 377, 838 |
| Eco57I | CTGAAG | 1 cut(s) | 654 |
| EcoO109I | RGGNCCY | 3 cut(s) | 484, 485, 1040 |
| EcoRII | CCWGG | 2 cut(s) | 202, 1082 |
| EcoRV | GATATC | 1 cut(s) | 601 |
| EcoT14I | CCWWGG | 4 cut(s) | 415, 534, 790, 1043 |
| EcoT38I | GRGCYC | 1 cut(s) | 488 |
| ErhI | CCWWGG | 4 cut(s) | 415, 534, 790, 1043 |
| FaeI | CATG | 4 cut(s) | 230, 269, 538, 881 |
| FaqI | GGGAC | 1 cut(s) | 1080 |
| FatI | CATG | 4 cut(s) | 226, 265, 534, 877 |
| FauI | CCCGC | 2 cut(s) | 53, 179 |
| Fnu4HI | GCNGC | 5 cut(s) | 119, 139, 282, 353, 946 |
| FokI | GGATG | 3 cut(s) | 422, 664, 1035 |
| FriOI | GRGCYC | 1 cut(s) | 488 |
| Fsp4HI | GCNGC | 5 cut(s) | 119, 139, 282, 353, 946 |
| FspBI | CTAG | 2 cut(s) | 287, 1044 |
| GlaI | GCGC | 1 cut(s) | 831 |
| GluI | GCNGC | 5 cut(s) | 119, 139, 282, 353, 946 |
| GsaI | CCCAGC | 2 cut(s) | 368, 830 |
| GsuI | CTGGAG | 1 cut(s) | 186 |
| HaeIII | GGCC | 4 cut(s) | 118, 486, 1042, 1124 |
| HapII | CCGG | 1 cut(s) | 1135 |
| HgaI | GACGC | 1 cut(s) | 31 |
| HhaI | GCGC | 1 cut(s) | 832 |
| Hin1II | CATG | 4 cut(s) | 230, 269, 538, 881 |
| Hin6I | GCGC | 1 cut(s) | 830 |
| HinP1I | GCGC | 1 cut(s) | 830 |
| HinfI | GANTC | 6 cut(s) | 79, 105, 177, 752, 1093, 1154 |
| HpaII | CCGG | 1 cut(s) | 1135 |
| HphI | GGTGA | 4 cut(s) | 316, 434, 604, 968 |
| Hpy166II | GTNNAC | 6 cut(s) | 377, 400, 467, 509, 838, 1168 |
| Hpy188I | TCNGA | 3 cut(s) | 257, 442, 767 |
| Hpy188III | TCNNGA | 7 cut(s) | 76, 581, 682, 861, 914, 1111, 1194 |
| Hpy8I | GTNNAC | 6 cut(s) | 377, 400, 467, 509, 838, 1168 |
| Hpy99I | CGWCG | 2 cut(s) | 688, 846 |
| HpyAV | CCTTC | 7 cut(s) | 137, 142, 160, 623, 678, 1030, 1065 |
| HpyCH4III | ACNGT | 4 cut(s) | 786, 842, 850, 1184 |
| HpyCH4V | TGCA | 7 cut(s) | 162, 269, 360, 509, 637, 737, 1149 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 45, 287, 497, 506, 743, 1146 |
| HpyF3I | CTNAG | 2 cut(s) | 113, 209 |
| Hsp92II | CATG | 4 cut(s) | 230, 269, 538, 881 |
| HspAI | GCGC | 1 cut(s) | 830 |
| Kzo9I | GATC | 3 cut(s) | 442, 805, 910 |
| LguI | GCTCTTC | 1 cut(s) | 736 |
| LmnI | GCTCC | 2 cut(s) | 670, 1137 |
| Lsp1109I | GCAGC | 3 cut(s) | 268, 364, 932 |
| LweI | GCATC | 2 cut(s) | 299, 400 |
| MaeI | CTAG | 2 cut(s) | 287, 1044 |
| MaeIII | GTNAC | 3 cut(s) | 122, 592, 1184 |
| MalI | GATC | 3 cut(s) | 444, 807, 912 |
| MboI | GATC | 3 cut(s) | 442, 805, 910 |
| MboII | GAAGA | 6 cut(s) | 57, 308, 445, 753, 899, 1076 |
| MfeI | CAATTG | 1 cut(s) | 1059 |
| MhlI | GDGCHC | 6 cut(s) | 103, 488, 511, 563, 692, 974 |
| MluCI | AATT | 8 cut(s) | 342, 426, 576, 708, 778, 1059, 1070, 1103 |
| MluI | ACGCGT | 1 cut(s) | 956 |
| MlyI | GAGTC | 3 cut(s) | 73, 99, 1102 |
| MmeI | TCCRAC | 1 cut(s) | 235 |
| MseI | TTAA | 1 cut(s) | 812 |
| MslI | CAYNNNNRTG | 3 cut(s) | 539, 695, 882 |
| MspI | CCGG | 1 cut(s) | 1135 |
| MspR9I | CCNGG | 2 cut(s) | 204, 1084 |
| MunI | CAATTG | 1 cut(s) | 1059 |
| MvaI | CCWGG | 2 cut(s) | 204, 1084 |
| MvnI | CGCG | 3 cut(s) | 121, 832, 958 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 45, 287, 497, 506, 743, 1146 |
| NcoI | CCATGG | 1 cut(s) | 534 |
| NdeII | GATC | 3 cut(s) | 442, 805, 910 |
| NlaIII | CATG | 4 cut(s) | 230, 269, 538, 881 |
| NlaIV | GGNNCC | 6 cut(s) | 485, 486, 823, 870, 1041, 1081 |
| NmeAIII | GCCGAG | 1 cut(s) | 1150 |
| NmuCI | GTSAC | 1 cut(s) | 592 |
| NspI | RCATGY | 1 cut(s) | 269 |
| PaqCI | CACCTGC | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 1 cut(s) | 736 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 502 |
| PfeI | GAWTC | 3 cut(s) | 177, 752, 1154 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 371, 878 |
| PfoI | TCCNGGA | 1 cut(s) | 1082 |
| PkrI | GCNGC | 5 cut(s) | 120, 140, 283, 354, 947 |
| PleI | GAGTC | 3 cut(s) | 73, 99, 1101 |
| PpsI | GAGTC | 3 cut(s) | 73, 99, 1101 |
| Psp6I | CCWGG | 2 cut(s) | 202, 1082 |
| PspFI | CCCAGC | 2 cut(s) | 364, 826 |
| PspGI | CCWGG | 2 cut(s) | 202, 1082 |
| PspN4I | GGNNCC | 6 cut(s) | 485, 486, 823, 870, 1041, 1081 |
| PspOMI | GGGCCC | 1 cut(s) | 484 |
| PspPI | GGNCC | 6 cut(s) | 377, 484, 485, 838, 1040, 1122 |
| PstI | CTGCAG | 1 cut(s) | 739 |
| RsaI | GTAC | 3 cut(s) | 399, 468, 961 |
| RsaNI | GTAC | 3 cut(s) | 398, 467, 960 |
| RseI | CAYNNNNRTG | 3 cut(s) | 539, 695, 882 |
| SapI | GCTCTTC | 1 cut(s) | 736 |
| SaqAI | TTAA | 1 cut(s) | 812 |
| SatI | GCNGC | 5 cut(s) | 119, 139, 282, 353, 946 |
| Sau3AI | GATC | 3 cut(s) | 442, 805, 910 |
| Sau96I | GGNCC | 6 cut(s) | 377, 484, 485, 838, 1040, 1122 |
| SbfI | CCTGCAGG | 1 cut(s) | 739 |
| SchI | GAGTC | 3 cut(s) | 73, 99, 1102 |
| ScrFI | CCNGG | 2 cut(s) | 204, 1084 |
| SdaI | CCTGCAGG | 1 cut(s) | 739 |
| SduI | GDGCHC | 6 cut(s) | 103, 488, 511, 563, 692, 974 |
| SfaNI | GCATC | 2 cut(s) | 299, 400 |
| SfcI | CTRYAG | 2 cut(s) | 735, 1180 |
| SinI | GGWCC | 2 cut(s) | 377, 838 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 539, 695, 882 |
| SmlI | CTYRAG | 1 cut(s) | 478 |
| SmoI | CTYRAG | 1 cut(s) | 478 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 739 |
| Sse9I | AATT | 8 cut(s) | 342, 426, 576, 708, 778, 1059, 1070, 1103 |
| SsiI | CCGC | 6 cut(s) | 46, 119, 136, 139, 172, 189 |
| SspI | AATATT | 2 cut(s) | 334, 625 |
| SspMI | CTAG | 2 cut(s) | 287, 1044 |
| StyD4I | CCNGG | 2 cut(s) | 202, 1082 |
| StyI | CCWWGG | 4 cut(s) | 415, 534, 790, 1043 |
| TaaI | ACNGT | 4 cut(s) | 786, 842, 850, 1184 |
| TaqI | TCGA | 4 cut(s) | 103, 194, 580, 808 |
| TasI | AATT | 8 cut(s) | 342, 426, 576, 708, 778, 1059, 1070, 1103 |
| TatI | WGTACW | 2 cut(s) | 397, 466 |
| TauI | GCSGC | 2 cut(s) | 121, 141 |
| TfiI | GAWTC | 3 cut(s) | 177, 752, 1154 |
| Tru1I | TTAA | 1 cut(s) | 812 |
| Tru9I | TTAA | 1 cut(s) | 812 |
| TscAI | CASTG | 3 cut(s) | 24, 791, 853 |
| TseFI | GTSAC | 1 cut(s) | 592 |
| TseI | GCWGC | 3 cut(s) | 281, 352, 945 |
| Tsp45I | GTSAC | 1 cut(s) | 592 |
| TspDTI | ATGAA | 5 cut(s) | 17, 83, 246, 668, 900 |
| TspRI | CASTG | 3 cut(s) | 24, 791, 853 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 371, 878 |
| VneI | GTGCAC | 1 cut(s) | 507 |
| VpaK11BI | GGWCC | 2 cut(s) | 377, 838 |
| XapI | RAATTY | 3 cut(s) | 708, 778, 1103 |
| XceI | RCATGY | 1 cut(s) | 269 |
| XmaJI | CCTAGG | 1 cut(s) | 1043 |
| XspI | CTAG | 2 cut(s) | 287, 1044 |