MD07G1069500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014933
Physical Location & Seq
Forward (+)
6579127 .. 6579504
378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1069500.v1.1.491

Sequence Viewer

Length: 378 bp
ATGTTTAGGGCTCACTGGTCTCACACGCAGACCCATCCCAATTTCTCTTATCATTCGCCCCACAAAACCCAAATCCCAAAAATACCCAAAAGATTTGTGGTATTTGCGAACAACGGCAGCGGGTTGGAGCAGGATTCGAATTCCAAGGAGAGGGTAGAAGAGAAAGGCAAAGATGAAGGAGCTGGATCCGACGGTGGTGGCAGTGACGATGATTTGGGCAAGAATCAACGGCCTTTATTCGGCAATATCAGATGGGGTGATCTCCTACTGGACCCAGATCCTAACGACGTCTTGGCCGTCGGATTGACTGGGCTGCTGACGTGGGCGAGTGTGCGGGTGCTGTCCATCGCATTGGCTATGCTTGTTGCTGCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.58

Weight (kDa)

6.17

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40045
malus_domestica MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica Prupe.2G086600_v2.0.a1
pyrus_communis pycom07g06960
rosa_chinensis RchiOBHm_Chr1g0333251
rosa_laevigata RLG00000029618
rosa_multiflora Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii Rroxscaffold_4G00317670
rosa_rugosa Rorug01G0108200
rosa_samantha Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana Rw1G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 291
AciI CCGC 2 cut(s) 120, 334
AclWI GGATC 3 cut(s) 180, 193, 272
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 139
AcyI GRCGYC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 150, 239
AjiI CACGTC 1 cut(s) 321
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 3 cut(s) 180, 193, 272
AoxI GGCC 2 cut(s) 230, 294
ApeKI GCWGC 3 cut(s) 117, 313, 368
ApoI RAATTY 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 269
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 271
BamHI GGATCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 129, 300, 355
BccI CCATC 3 cut(s) 42, 246, 353
BceAI ACGGC 3 cut(s) 130, 245, 281
BcoDI GTCTC 1 cut(s) 24
BisI GCNGC 3 cut(s) 118, 314, 369
BlsI GCNGC 3 cut(s) 119, 315, 370
Bme18I GGWCC 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 187, 273
BmrI ACTGGG 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 239
Bse1I ACTGG 3 cut(s) 20, 273, 313
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 150, 239
BseNI ACTGG 3 cut(s) 20, 273, 313
BseXI GCAGC 3 cut(s) 129, 300, 355
BshFI GGCC 2 cut(s) 232, 296
BslI CCNNNNNNNGG 2 cut(s) 150, 239
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 2 cut(s) 232, 296
Bso31I GGTCTC 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 3 cut(s) 185, 259, 277
BspACI CCGC 2 cut(s) 120, 334
BspANI GGCC 2 cut(s) 232, 296
BspLI GGNNCC 2 cut(s) 187, 273
BspPI GGATC 3 cut(s) 180, 193, 272
BspT104I TTCGAA 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 24
BsrI ACTGG 3 cut(s) 20, 273, 313
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 185, 259, 277
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 137
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 3 cut(s) 188, 262, 280
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 185, 259, 277
BstV1I GCAGC 3 cut(s) 129, 300, 355
BstX2I RGATCY 2 cut(s) 185, 277
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 2 cut(s) 185, 277
BsuRI GGCC 2 cut(s) 232, 296
BtgZI GCGATG 1 cut(s) 331
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 13, 208
Cfr13I GGNCC 1 cut(s) 271
CviJI RGCY 6 cut(s) 11, 182, 232, 296, 313, 356
CviKI_1 RGCY 6 cut(s) 11, 182, 232, 296, 313, 356
DpnI GATC 3 cut(s) 187, 261, 279
DpnII GATC 3 cut(s) 185, 259, 277
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 271
EcoRI GAATTC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 144
FaiI YATR 1 cut(s) 359
FauI CCCGC 2 cut(s) 113, 327
Fnu4HI GCNGC 3 cut(s) 118, 314, 369
FokI GGATG 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 118, 314, 369
GluI GCNGC 3 cut(s) 118, 314, 369
HaeIII GGCC 2 cut(s) 232, 296
Hin1I GRCGYC 1 cut(s) 288
HinfI GANTC 2 cut(s) 134, 223
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 190, 251, 302
Hpy99I CGWCG 3 cut(s) 194, 290, 302
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 2 cut(s) 288, 320
HpySE526I ACGT 2 cut(s) 288, 320
Hsp92I GRCGYC 1 cut(s) 288
Kzo9I GATC 3 cut(s) 185, 259, 277
LmnI GCTCC 2 cut(s) 127, 179
LpnPI CCDG 6 cut(s) 116, 168, 254, 288, 294, 357
Lsp1109I GCAGC 3 cut(s) 129, 300, 355
MaeII ACGT 2 cut(s) 288, 320
MaeIII GTNAC 1 cut(s) 203
MalI GATC 3 cut(s) 187, 261, 279
MboI GATC 3 cut(s) 185, 259, 277
MboII GAAGA 1 cut(s) 170
MflI RGATCY 2 cut(s) 185, 277
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 40, 139
MmeI TCCRAC 3 cut(s) 105, 213, 280
MnlI CCTC 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 120
NdeII GATC 3 cut(s) 185, 259, 277
NlaIV GGNNCC 2 cut(s) 187, 273
NmuCI GTSAC 1 cut(s) 203
NspV TTCGAA 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PfeI GAWTC 2 cut(s) 134, 223
PkrI GCNGC 3 cut(s) 119, 315, 370
PspN4I GGNNCC 2 cut(s) 187, 273
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 2 cut(s) 185, 277
SatI GCNGC 3 cut(s) 118, 314, 369
Sau3AI GATC 3 cut(s) 185, 259, 277
Sau96I GGNCC 1 cut(s) 271
SduI GDGCHC 1 cut(s) 13
SetI ASST 3 cut(s) 184, 291, 323
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 1 cut(s) 271
Sse9I AATT 2 cut(s) 40, 139
SsiI CCGC 2 cut(s) 120, 334
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 2 cut(s) 291, 323
TaqI TCGA 1 cut(s) 137
TasI AATT 2 cut(s) 40, 139
TfiI GAWTC 2 cut(s) 134, 223
TscAI CASTG 2 cut(s) 20, 208
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 3 cut(s) 117, 313, 368
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 2 cut(s) 20, 208
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.