Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014933

Physical Location & Seq

Genomic Coordinates Forward (+)

24558950 .. 24559453

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTACGGCTTGCTGCTCTCTCACTGCCCGCATTCCAATTCCCATACCCTTTAAATTCCACAACAATACCTCTATCTATTCCCGCCCAACAATATACCCACCTCAATTCTTTCTCTTCTTCTTCGCTCCTCAAAACCCAAACCCAAATCCCCAAAAGACCCATCAGATTCGTAGCGCTCGCAAACAACAACAACAACAACAATGGTTTGAACCAGGAGAAGGAAGAGGAGAAAGAGAAAGAACAAGGAATTGGGTCCAACGGCGGCGGAGATGGGTCGGGGAAGAATCAGCGGTCTATATTCAGCAACATCAGGTGGGGCGATCTGTTGCTGGACCCAGATCCTAACAACATCTTGGCCGTCGGATTGACGGGGATACTGACATGGGCAAGCGTGCAGGTTCTGTGGCAGCTCTTGTTCATCTCGTTGGCTATACTCGTTGCTGCTGTTAAGTATTCCTTCATTGCTGCTGTTCTTCTTTTCATTCTCATTACCCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.29

Weight (kDa)

9.05

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40045
malus_domestica	MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica	Prupe.2G086600_v2.0.a1
pyrus_communis	pycom07g06960
rosa_chinensis	RchiOBHm_Chr1g0333251
rosa_laevigata	RLG00000029618
rosa_multiflora	Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii	Rroxscaffold_4G00317670
rosa_rugosa	Rorug01G0108200
rosa_samantha	Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana	Rw1G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AciI	CCGC	5 cut(s)	30, 84, 264, 267, 292
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	55
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
AlwI	GGATC	1 cut(s)	335
AlwNI	CAGNNNCTG	1 cut(s)	403
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	4 cut(s)	14, 409, 443, 467
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	255, 334
AvaII	GGWCC	2 cut(s)	255, 334
BbvI	GCAGC	3 cut(s)	421, 430, 454
BccI	CCATC	2 cut(s)	170, 266
BceAI	ACGGC	3 cut(s)	23, 277, 344
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	5 cut(s)	15, 265, 410, 444, 468
BlsI	GCNGC	5 cut(s)	16, 266, 411, 445, 469
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	2 cut(s)	255, 334
BmgT120I	GGNCC	2 cut(s)	255, 334
BmiI	GGNNCC	2 cut(s)	256, 336
BmrFI	CCNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	462
BseRI	GAGGAG	2 cut(s)	119, 242
BseXI	GCAGC	3 cut(s)	421, 430, 454
BsgI	GTGCAG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	2 cut(s)	322, 340
BspACI	CCGC	5 cut(s)	30, 84, 264, 267, 292
BspANI	GGCC	1 cut(s)	359
BspLI	GGNNCC	2 cut(s)	256, 336
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	462
BssMI	GATC	2 cut(s)	322, 340
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	2 cut(s)	121, 219
BstC8I	GCNNGC	5 cut(s)	12, 30, 180, 391, 395
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	325, 343
BstMBI	GATC	2 cut(s)	322, 340
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	421, 430, 454
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	359
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	5 cut(s)	12, 30, 180, 391, 395
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	255, 334
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	4 cut(s)	10, 359, 412, 431
CviKI_1	RGCY	4 cut(s)	10, 359, 412, 431
DpnI	GATC	2 cut(s)	324, 342
DpnII	GATC	2 cut(s)	322, 340
DraI	TTTAAA	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	121, 219
EarI	CTCTTC	2 cut(s)	121, 219
EciI	GGCGGA	1 cut(s)	282
Eco47I	GGWCC	2 cut(s)	255, 334
Eco47III	AGCGCT	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	387
FaiI	YATR	5 cut(s)	46, 96, 299, 385, 434
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	1 cut(s)	383
FauI	CCCGC	2 cut(s)	37, 91
Fnu4HI	GCNGC	5 cut(s)	15, 265, 410, 444, 468
Fsp4HI	GCNGC	5 cut(s)	15, 265, 410, 444, 468
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	15, 265, 410, 444, 468
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	387
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	168, 286
Hpy188I	TCNGA	2 cut(s)	167, 365
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	2 cut(s)	214, 469
HpyCH4V	TGCA	1 cut(s)	397
Hsp92II	CATG	1 cut(s)	387
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	322, 340
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	6 cut(s)	200, 227, 298, 317, 351, 383
Lsp1109I	GCAGC	3 cut(s)	421, 430, 454
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	324, 342
MboI	GATC	2 cut(s)	322, 340
MboII	GAAGA	6 cut(s)	108, 111, 114, 236, 295, 467
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	4 cut(s)	38, 55, 106, 249
MmeI	TCCRAC	2 cut(s)	282, 343
MnlI	CCTC	4 cut(s)	81, 113, 140, 220
MseI	TTAA	3 cut(s)	53, 450, 502
MspA1I	CMGCKG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	215
NdeII	GATC	2 cut(s)	322, 340
NlaIII	CATG	1 cut(s)	387
NlaIV	GGNNCC	2 cut(s)	256, 336
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	168, 286
PkrI	GCNGC	5 cut(s)	16, 266, 411, 445, 469
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	256, 336
PspPI	GGNCC	2 cut(s)	255, 334
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	53, 450, 502
SatI	GCNGC	5 cut(s)	15, 265, 410, 444, 468
Sau3AI	GATC	2 cut(s)	322, 340
Sau96I	GGNCC	2 cut(s)	255, 334
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	5 cut(s)	73, 105, 317, 402, 414
SinI	GGWCC	2 cut(s)	255, 334
Sse9I	AATT	4 cut(s)	38, 55, 106, 249
SsiI	CCGC	5 cut(s)	30, 84, 264, 267, 292
StyD4I	CCNGG	1 cut(s)	213
TasI	AATT	4 cut(s)	38, 55, 106, 249
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	168, 286
Tru1I	TTAA	3 cut(s)	53, 450, 502
Tru9I	TTAA	3 cut(s)	53, 450, 502
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	4 cut(s)	14, 409, 443, 467
TspDTI	ATGAA	3 cut(s)	409, 451, 472
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	255, 334
XapI	RAATTY	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.