MD07G1087200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014933
Physical Location & Seq
Reverse (-)
9101170 .. 9101661
492 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1087200.v1.1.491

Sequence Viewer

Length: 492 bp
ATGTTAGGGCTCACTGCTCTCACACCTCCACCAATCGCAACACTTCCATCTATTCCATTTCCATCGCTACACATCCATCTCAATTTCTCTTCCTATTCGCCCCTCAAAACCCAAATCCCAAAAATACCCAAAAGATTTGTAGTATTTGCGAACAACGGCAACGGGTTGAAGCAGGATTCCAATTCCGAGGAGAGGGAAGAGAGGGAAGAAGAGAAAGGCGACGAAGAAGGAATTGGATCCGACGGTGGGGGCGGTGACGATGATTTGGGGAAGAATCAACGGCCGTTATTCGGCAACATCAGATGGGGTGATCTGCTGCTGGACCCAGATCCTAACAACATCTTGGCCGTCGGATTGACGGGGCTGCTGACGTGGGCGAGTGTGCAGGTGCTGTGGCAGCTGCTGTTCATCGCATTGGCTATACTTGTTGCTGCTGTTAAGTATTCCTTCATTGCTGCTGTCCTTCTCTTCATTCTCATTGCCCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.7

Weight (kDa)

4.81

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40045
malus_domestica MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica Prupe.2G086600_v2.0.a1
pyrus_communis pycom07g06960
rosa_chinensis RchiOBHm_Chr1g0333251
rosa_laevigata RLG00000029618
rosa_multiflora Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii Rroxscaffold_4G00317670
rosa_rugosa Rorug01G0108200
rosa_samantha Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana Rw1G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 376
Acc36I ACCTGC 1 cut(s) 376
AciI CCGC 1 cut(s) 252
AclWI GGATC 3 cut(s) 231, 244, 323
AcoI YGGCCR 2 cut(s) 281, 345
AfiI CCNNNNNNNGG 3 cut(s) 192, 246, 290
AgsI TTSAA 1 cut(s) 169
AjiI CACGTC 1 cut(s) 372
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
AlwI GGATC 3 cut(s) 231, 244, 323
AlwNI CAGNNNCTG 2 cut(s) 391, 403
AoxI GGCC 2 cut(s) 281, 345
ApeKI GCWGC 6 cut(s) 316, 364, 397, 400, 431, 455
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 266, 320
AvaII GGWCC 1 cut(s) 322
BamHI GGATCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 12
BbvI GCAGC 6 cut(s) 303, 351, 387, 409, 418, 442
BccI CCATC 4 cut(s) 55, 70, 84, 297
BceAI ACGGC 4 cut(s) 172, 268, 296, 332
BfuAI ACCTGC 1 cut(s) 376
BisI GCNGC 6 cut(s) 317, 365, 398, 401, 432, 456
BlsI GCNGC 6 cut(s) 318, 366, 399, 402, 433, 457
Bme18I GGWCC 1 cut(s) 322
BmgBI CACGTC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 2 cut(s) 238, 324
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 246, 290
Bse3DI GCAATG 2 cut(s) 450, 477
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 3 cut(s) 192, 246, 290
BseMI GCAATG 2 cut(s) 450, 477
BseRI GAGGAG 1 cut(s) 203
BseX3I CGGCCG 1 cut(s) 281
BseXI GCAGC 6 cut(s) 303, 351, 387, 409, 418, 442
BsgI GTGCAG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 283, 347
BsiEI CGRYCG 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 192, 246, 290
BsnI GGCC 2 cut(s) 283, 347
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 3 cut(s) 236, 310, 328
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 283, 347
BspLI GGNNCC 2 cut(s) 238, 324
BspMI ACCTGC 1 cut(s) 376
BspPI GGATC 3 cut(s) 231, 244, 323
BsrDI GCAATG 2 cut(s) 450, 477
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 236, 310, 328
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 4 cut(s) 94, 192, 204, 473
BstF5I GGATG 1 cut(s) 72
BstKTI GATC 3 cut(s) 239, 313, 331
BstMBI GATC 3 cut(s) 236, 310, 328
BstMCI CGRYCG 1 cut(s) 284
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstV1I GCAGC 6 cut(s) 303, 351, 387, 409, 418, 442
BstX2I RGATCY 2 cut(s) 236, 328
BstYI RGATCY 2 cut(s) 236, 328
BstZI CGGCCG 1 cut(s) 281
BsuRI GGCC 2 cut(s) 283, 347
BtgZI GCGATG 2 cut(s) 48, 394
BtrI CACGTC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 376
CaiI CAGNNNCTG 2 cut(s) 391, 403
Cfr13I GGNCC 1 cut(s) 322
CviJI RGCY 6 cut(s) 10, 283, 347, 364, 400, 419
CviKI_1 RGCY 6 cut(s) 10, 283, 347, 364, 400, 419
DpnI GATC 3 cut(s) 238, 312, 330
DpnII GATC 3 cut(s) 236, 310, 328
EaeI YGGCCR 2 cut(s) 281, 345
EagI CGGCCG 1 cut(s) 281
Eam1104I CTCTTC 4 cut(s) 94, 192, 204, 473
EarI CTCTTC 4 cut(s) 94, 192, 204, 473
EclXI CGGCCG 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 322
Eco52I CGGCCG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 12
FaiI YATR 1 cut(s) 422
FalI AAGNNNNNCTT 2 cut(s) 431, 463
Fnu4HI GCNGC 6 cut(s) 317, 365, 398, 401, 432, 456
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 6 cut(s) 317, 365, 398, 401, 432, 456
GluI GCNGC 6 cut(s) 317, 365, 398, 401, 432, 456
HaeIII GGCC 2 cut(s) 283, 347
HinfI GANTC 2 cut(s) 176, 274
HphI GGTGA 2 cut(s) 266, 320
Hpy188I TCNGA 4 cut(s) 187, 241, 302, 353
Hpy99I CGWCG 3 cut(s) 224, 245, 353
HpyAV CCTTC 3 cut(s) 221, 457, 473
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpySE526I ACGT 1 cut(s) 371
Kzo9I GATC 3 cut(s) 236, 310, 328
LpnPI CCDG 4 cut(s) 158, 305, 339, 371
Lsp1109I GCAGC 6 cut(s) 303, 351, 387, 409, 418, 442
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 254
MalI GATC 3 cut(s) 238, 312, 330
MboI GATC 3 cut(s) 236, 310, 328
MboII GAAGA 7 cut(s) 81, 209, 218, 221, 236, 283, 460
MflI RGATCY 2 cut(s) 236, 328
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 82, 181, 231
MmeI TCCRAC 2 cut(s) 264, 331
MnlI CCTC 5 cut(s) 36, 113, 181, 186, 195
MseI TTAA 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 400
MwoI GCNNNNNNNGC 1 cut(s) 397
NdeII GATC 3 cut(s) 236, 310, 328
NlaIV GGNNCC 2 cut(s) 238, 324
NmuCI GTSAC 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 176, 274
PkrI GCNGC 6 cut(s) 318, 366, 399, 402, 433, 457
PspN4I GGNNCC 2 cut(s) 238, 324
PspPI GGNCC 1 cut(s) 322
PstNI CAGNNNCTG 2 cut(s) 391, 403
PsuI RGATCY 2 cut(s) 236, 328
PvuII CAGCTG 1 cut(s) 400
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 6 cut(s) 317, 365, 398, 401, 432, 456
Sau3AI GATC 3 cut(s) 236, 310, 328
Sau96I GGNCC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 12
SetI ASST 4 cut(s) 28, 374, 390, 402
SinI GGWCC 1 cut(s) 322
Sse9I AATT 3 cut(s) 82, 181, 231
SsiI CCGC 1 cut(s) 252
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 374
TasI AATT 3 cut(s) 82, 181, 231
TfiI GAWTC 2 cut(s) 176, 274
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 6 cut(s) 316, 364, 397, 400, 431, 455
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 397, 439, 460
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.