Rh1BG100600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014933
Physical Location & Seq
Forward (+)
17560932 .. 17561861
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG100600.1

Sequence Viewer

Length: 498 bp
ATGTTACGGCTCGCTGCTCTCTCACTGCCCCCATTCCAATTCCCATACCCTTTAAATTCCACAACAATACCTCTATCTATTCCCGCCCAACAATACACCCACGTCAATTCTTTCTCTTCTTCTTCGCTCCTCAAAACCCAAACCCAAATCCCCAAGAGACCCATCAGATTCGTAGCACTCGCAAACAACAACAACAATGGTTTGAACCAGGAGACGGAAGAGGAGAAAGAGAAAGAACAAGGAATTGGGTCCAACGGCGGCGGAGATGGGTCGGGGAAGAATCAACGGTCTATATTCAGCAACATCAGGTGGGGCGATCTGCTGCTGGACCCAGATCCTAACAACATCTTGGCCGTCGGATTGACGGGGATACTGACATGGGCAAGCGTGCAGGTTCTATGGCAGCTCTTGTTCATCTCGTTGGCTATACTCGTTGCTGCTGTTAAGTATTCCTTCATTGCTGCTGTTCTTCTTTTCATTCTCATTACCCTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.05

Weight (kDa)

8.03

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40045
malus_domestica MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica Prupe.2G086600_v2.0.a1
pyrus_communis pycom07g06960
rosa_chinensis RchiOBHm_Chr1g0333251
rosa_laevigata RLG00000029618
rosa_multiflora Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii Rroxscaffold_4G00317670
rosa_rugosa Rorug01G0108200
rosa_samantha Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana Rw1G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AciI CCGC 3 cut(s) 84, 258, 261
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 205
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 207
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
Alw26I GTCTC 2 cut(s) 151, 206
AlwI GGATC 1 cut(s) 329
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 5 cut(s) 14, 322, 403, 437, 461
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 249, 328
AvaII GGWCC 2 cut(s) 249, 328
BbvI GCAGC 4 cut(s) 309, 415, 424, 448
BccI CCATC 2 cut(s) 170, 260
BceAI ACGGC 3 cut(s) 23, 271, 338
BciT130I CCWGG 1 cut(s) 209
BciVI GTATCC 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 151, 206
BfuAI ACCTGC 1 cut(s) 382
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
BlsI GCNGC 6 cut(s) 16, 260, 324, 405, 439, 463
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 249, 328
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 249, 328
BmiI GGNNCC 2 cut(s) 250, 330
BmrFI CCNGG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 456
BseRI GAGGAG 2 cut(s) 119, 236
BseXI GCAGC 4 cut(s) 309, 415, 424, 448
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 151, 206
BsmBI CGTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 316, 334
BspACI CCGC 3 cut(s) 84, 258, 261
BspANI GGCC 1 cut(s) 353
BspLI GGNNCC 2 cut(s) 250, 330
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 456
BssMI GATC 2 cut(s) 316, 334
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 2 cut(s) 121, 213
BstC8I GCNNGC 3 cut(s) 12, 385, 389
BstKTI GATC 2 cut(s) 319, 337
BstMAI GTCTC 2 cut(s) 151, 206
BstMBI GATC 2 cut(s) 316, 334
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 309, 415, 424, 448
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 1 cut(s) 353
BtrI CACGTC 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 3 cut(s) 12, 385, 389
Cfr13I GGNCC 2 cut(s) 249, 328
CviAII CATG 1 cut(s) 378
CviJI RGCY 4 cut(s) 10, 353, 406, 425
CviKI_1 RGCY 4 cut(s) 10, 353, 406, 425
DpnI GATC 2 cut(s) 318, 336
DpnII GATC 2 cut(s) 316, 334
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 121, 213
EarI CTCTTC 2 cut(s) 121, 213
EciI GGCGGA 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 249, 328
EcoRII CCWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 1 cut(s) 381
FaiI YATR 5 cut(s) 46, 293, 379, 400, 428
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 1 cut(s) 377
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
Fsp4HI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
GluI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
HaeIII GGCC 1 cut(s) 353
Hin1II CATG 1 cut(s) 381
HinfI GANTC 2 cut(s) 168, 280
Hpy188I TCNGA 2 cut(s) 167, 359
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 391
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 381
Kzo9I GATC 2 cut(s) 316, 334
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 194, 221, 292, 311, 345, 377
Lsp1109I GCAGC 4 cut(s) 309, 415, 424, 448
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 318, 336
MboI GATC 2 cut(s) 316, 334
MboII GAAGA 6 cut(s) 108, 111, 114, 230, 289, 461
MflI RGATCY 1 cut(s) 334
MluCI AATT 4 cut(s) 38, 55, 106, 243
MmeI TCCRAC 2 cut(s) 276, 337
MnlI CCTC 3 cut(s) 81, 140, 214
MseI TTAA 3 cut(s) 53, 444, 496
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
NdeII GATC 2 cut(s) 316, 334
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 2 cut(s) 250, 330
PfeI GAWTC 2 cut(s) 168, 280
PkrI GCNGC 6 cut(s) 16, 260, 324, 405, 439, 463
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 250, 330
PspPI GGNCC 2 cut(s) 249, 328
PsuI RGATCY 1 cut(s) 334
SaqAI TTAA 3 cut(s) 53, 444, 496
SatI GCNGC 6 cut(s) 15, 259, 323, 404, 438, 462
Sau3AI GATC 2 cut(s) 316, 334
Sau96I GGNCC 2 cut(s) 249, 328
ScrFI CCNGG 1 cut(s) 209
SetI ASST 5 cut(s) 73, 105, 311, 396, 408
SinI GGWCC 2 cut(s) 249, 328
Sse9I AATT 4 cut(s) 38, 55, 106, 243
SsiI CCGC 3 cut(s) 84, 258, 261
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 105
TasI AATT 4 cut(s) 38, 55, 106, 243
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 168, 280
Tru1I TTAA 3 cut(s) 53, 444, 496
Tru9I TTAA 3 cut(s) 53, 444, 496
TscAI CASTG 1 cut(s) 30
TseI GCWGC 5 cut(s) 14, 322, 403, 437, 461
TspDTI ATGAA 3 cut(s) 403, 445, 466
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 249, 328
XapI RAATTY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.