RchiOBHm_Chr1g0333251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014933
Physical Location & Seq
Forward (+)
25265357 .. 25266180
824 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56206

Sequence Viewer

Length: 501 bp
ATGTTACGGCTTGCTGCTCTCTCACTGCCCGCATTCCAATTCCCATACCCTTTAAATTCCACAACAATTCCTCTATCTATTCCCGCCCAACAATATACCCACCTCAATTCTTTCTCTTCTTCTTCGCTCCTCAAAACCCAAACCCAAATCCCCAAAAGACCCATCAGATTCGTAGCGCTCGCAAACAACAACAACAACAATGGTTTGAACCAGGAGAAGGAAGAGGAAAAAGAGAAAGAACAAGGAATTGGGTCCAACGGCGGCGGAGATGGGTCGGGGAAGAATCAGCGGTCTATATTCAGCAACATCAGGTGGGGCGATCTGCTGCTGGACCCAGATCCTAACAACATCTTGGCCGTCGGATTGACGGGGATACTGACATGGGCAAGCGTGCAGGTTCTGTGGCAGCTCTTGTTCATCTCGTTGGCTATACTCGTTGCTGCTGTTAAGTATTCCTTCATTGCTGCTGTTCTTCTTTTCATTCTCATTACCCTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.18

Weight (kDa)

9.05

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40045
malus_domestica MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica Prupe.2G086600_v2.0.a1
pyrus_communis pycom07g06960
rosa_chinensis RchiOBHm_Chr1g0333251
rosa_laevigata RLG00000029618
rosa_multiflora Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii Rroxscaffold_4G00317670
rosa_rugosa Rorug01G0108200
rosa_samantha Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana Rw1G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AciI CCGC 5 cut(s) 30, 84, 261, 264, 289
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 55
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 400
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 1 cut(s) 354
ApeKI GCWGC 5 cut(s) 14, 325, 406, 440, 464
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 252, 331
AvaII GGWCC 2 cut(s) 252, 331
BbvI GCAGC 4 cut(s) 312, 418, 427, 451
BccI CCATC 2 cut(s) 170, 263
BceAI ACGGC 3 cut(s) 23, 274, 341
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 385
BfuI GTATCC 1 cut(s) 366
BisI GCNGC 6 cut(s) 15, 262, 326, 407, 441, 465
BlsI GCNGC 6 cut(s) 16, 263, 327, 408, 442, 466
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 2 cut(s) 252, 331
BmgT120I GGNCC 2 cut(s) 252, 331
BmiI GGNNCC 2 cut(s) 253, 333
BmrFI CCNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 4 cut(s) 312, 418, 427, 451
BsgI GTGCAG 1 cut(s) 413
BshFI GGCC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 217
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 319, 337
BspACI CCGC 5 cut(s) 30, 84, 261, 264, 289
BspANI GGCC 1 cut(s) 356
BspLI GGNNCC 2 cut(s) 253, 333
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 459
BssMI GATC 2 cut(s) 319, 337
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 2 cut(s) 121, 216
BstC8I GCNNGC 5 cut(s) 12, 30, 180, 388, 392
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 322, 340
BstMBI GATC 2 cut(s) 319, 337
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 4 cut(s) 312, 418, 427, 451
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 366
BsuRI GGCC 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 5 cut(s) 12, 30, 180, 388, 392
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 252, 331
CviAII CATG 1 cut(s) 381
CviJI RGCY 4 cut(s) 10, 356, 409, 428
CviKI_1 RGCY 4 cut(s) 10, 356, 409, 428
DpnI GATC 2 cut(s) 321, 339
DpnII GATC 2 cut(s) 319, 337
DraI TTTAAA 1 cut(s) 54
EaeI YGGCCR 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 121, 216
EarI CTCTTC 2 cut(s) 121, 216
EciI GGCGGA 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 252, 331
Eco47III AGCGCT 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 384
FaiI YATR 5 cut(s) 46, 96, 296, 382, 431
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 1 cut(s) 380
FauI CCCGC 2 cut(s) 37, 91
Fnu4HI GCNGC 6 cut(s) 15, 262, 326, 407, 441, 465
Fsp4HI GCNGC 6 cut(s) 15, 262, 326, 407, 441, 465
GlaI GCGC 1 cut(s) 177
GluI GCNGC 6 cut(s) 15, 262, 326, 407, 441, 465
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 356
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 384
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 168, 283
Hpy188I TCNGA 2 cut(s) 167, 362
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 211, 466
HpyCH4V TGCA 1 cut(s) 394
Hsp92II CATG 1 cut(s) 384
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 2 cut(s) 319, 337
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 197, 224, 295, 314, 348, 380
Lsp1109I GCAGC 4 cut(s) 312, 418, 427, 451
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 321, 339
MboI GATC 2 cut(s) 319, 337
MboII GAAGA 6 cut(s) 108, 111, 114, 233, 292, 464
MflI RGATCY 1 cut(s) 337
MluCI AATT 5 cut(s) 38, 55, 66, 106, 246
MmeI TCCRAC 2 cut(s) 279, 340
MnlI CCTC 4 cut(s) 81, 113, 140, 217
MseI TTAA 3 cut(s) 53, 447, 499
MspA1I CMGCKG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 212
NdeII GATC 2 cut(s) 319, 337
NlaIII CATG 1 cut(s) 384
NlaIV GGNNCC 2 cut(s) 253, 333
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 168, 283
PkrI GCNGC 6 cut(s) 16, 263, 327, 408, 442, 466
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 253, 333
PspPI GGNCC 2 cut(s) 252, 331
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 337
SaqAI TTAA 3 cut(s) 53, 447, 499
SatI GCNGC 6 cut(s) 15, 262, 326, 407, 441, 465
Sau3AI GATC 2 cut(s) 319, 337
Sau96I GGNCC 2 cut(s) 252, 331
ScrFI CCNGG 1 cut(s) 212
SetI ASST 4 cut(s) 105, 314, 399, 411
SinI GGWCC 2 cut(s) 252, 331
Sse9I AATT 5 cut(s) 38, 55, 66, 106, 246
SsiI CCGC 5 cut(s) 30, 84, 261, 264, 289
StyD4I CCNGG 1 cut(s) 210
TasI AATT 5 cut(s) 38, 55, 66, 106, 246
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 2 cut(s) 168, 283
Tru1I TTAA 3 cut(s) 53, 447, 499
Tru9I TTAA 3 cut(s) 53, 447, 499
TscAI CASTG 1 cut(s) 30
TseI GCWGC 5 cut(s) 14, 325, 406, 440, 464
TspDTI ATGAA 3 cut(s) 406, 448, 469
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 252, 331
XapI RAATTY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.