Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014933

Physical Location & Seq

Genomic Coordinates Reverse (-)

41314722 .. 41317159

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTACGGCTAGCTGCTCTCTCACTGCCCCCGTTCCAATTCCCATACCCTTTAAATTCCACAACAATACCTCTATCTATTCCCGCCCAACAATATACCCACCTCAATTCTTTCTCTTCTTCTTCGCTCCTCAAAACCCAGACCCAAATCCCCAAACGACCCATCAGATTCGTAGCGCTCGCAAACAATAACAACAATGGTTTGAACCAGGAGAAGGAAGAGGAGAAAGAGAAAGAGCAAGGAATTGGGTCCAACGGCGGCGGAGATGGGTTGGGGAAGAATCAACGGTCTATATTCAGCAACATCAGGTGGGGCGATCTGCTGCTGGACCCAGATCCTAACAACATCTTGGCCGTCGGATTGACGGTAACCTCTAAACCACCGGCACTCTCATCGCCACATTTAGAAACCACCACCGCAATATCGTCGAACGAGCATACCCTAGCCTCCCTAATCTCCCAGCTCGGCCTCTCCTTAGATGGTGCTGTTTTGCGCACCATTGTCGCCTTCCCCGCCGTCGATTCCTTCCTCAGCTTCAAATCTACTTCCTCCGCCCTCCGCAAGATCTGCCAAGCCCCCTCCGTCAAAGTCTCCGATCTCCGCTCCCTAATCCACGACGACTCCGACCAGCCACAGCAGTCCGATGCCTCCAAGCTCGTCGGAATTCCTCAAAGCTTTCCTTGTCAGGGAGGGTCCAAGCCCCTGACAGTTCCAAGAAATCAACCTCATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0001558 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005777 GO:0006464 GO:0006807 GO:0006919 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009893 GO:0009941 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0016020 GO:0016021 GO:0016043 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019867 GO:0023051 GO:0023056 GO:0030162 GO:0030308 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031325 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032268 GO:0032270 GO:0032446 GO:0032592 GO:0036211 GO:0040008 GO:0042579 GO:0042802 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043122 GO:0043123 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045862 GO:0045926 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051646 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0098573 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:2000116 GO:2001056

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GIDE zf-C3HC4_3

Protein Analysis

245

Amino Acids

26.19

Weight (kDa)

8.57

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40045
malus_domestica	MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica	Prupe.2G086600_v2.0.a1
pyrus_communis	pycom07g06960
rosa_chinensis	RchiOBHm_Chr1g0333251
rosa_laevigata	RLG00000029618
rosa_multiflora	Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii	Rroxscaffold_4G00317670
rosa_rugosa	Rorug01G0108200
rosa_samantha	Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana	Rw1G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	603
AciI	CCGC	8 cut(s)	84, 258, 261, 417, 513, 552, 559, 601
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	2 cut(s)	55, 663
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	214, 686
AgsI	TTSAA	2 cut(s)	205, 538
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	5 cut(s)	14, 463, 534, 655, 675
AluI	AGCT	5 cut(s)	14, 463, 534, 655, 675
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	329
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	2 cut(s)	351, 466
ApeKI	GCWGC	2 cut(s)	14, 322
ApoI	RAATTY	2 cut(s)	55, 663
AspLEI	GCGC	2 cut(s)	178, 495
AspS9I	GGNCC	3 cut(s)	249, 328, 693
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	3 cut(s)	249, 328, 693
BbvCI	CCTCAGC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	3 cut(s)	170, 260, 473
BceAI	ACGGC	4 cut(s)	23, 271, 338, 500
BcgI	CGANNNNNNTGC	6 cut(s)	375, 408, 409, 442, 484, 518
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	3 cut(s)	11, 443, 733
BfoI	RGCGCY	1 cut(s)	179
BglII	AGATCT	1 cut(s)	564
BisI	GCNGC	3 cut(s)	15, 259, 323
BlsI	GCNGC	3 cut(s)	16, 260, 324
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	3 cut(s)	249, 328, 693
BmgT120I	GGNCC	3 cut(s)	249, 328, 693
BmiI	GGNNCC	3 cut(s)	250, 330, 694
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	634
BmtI	GCTAGC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	605, 635
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 686
Bse118I	RCCGGY	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	209
BseLI	CCNNNNNNNGG	2 cut(s)	214, 686
BseMII	CTCAG	1 cut(s)	544
BseRI	GAGGAG	2 cut(s)	119, 236
BseXI	GCAGC	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	459
BshFI	GGCC	2 cut(s)	353, 468
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	214, 686
BsmAI	GTCTC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	353, 468
Bsp143I	GATC	4 cut(s)	316, 334, 564, 595
BspACI	CCGC	8 cut(s)	84, 258, 261, 417, 513, 552, 559, 601
BspANI	GGCC	2 cut(s)	353, 468
BspCNI	CTCAG	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	250, 330, 694
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	382
BssMI	GATC	4 cut(s)	316, 334, 564, 595
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	288, 367, 709
Bst6I	CTCTTC	2 cut(s)	121, 213
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	12, 180
BstDEI	CTNAG	2 cut(s)	475, 530
BstEII	GGTNACC	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	178, 495
BstKTI	GATC	4 cut(s)	319, 337, 567, 598
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	4 cut(s)	316, 334, 564, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 567
BstNI	CCWGG	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	334, 564
BstYI	RGATCY	2 cut(s)	334, 564
BsuRI	GGCC	2 cut(s)	353, 468
BtgZI	GCGATG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	12, 180
CfoI	GCGC	2 cut(s)	178, 495
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	249, 328, 693
CviAII	CATG	1 cut(s)	728
DdeI	CTNAG	2 cut(s)	475, 530
DpnI	GATC	4 cut(s)	318, 336, 566, 597
DpnII	GATC	4 cut(s)	316, 334, 564, 595
DraI	TTTAAA	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	121, 213
EarI	CTCTTC	2 cut(s)	121, 213
EciI	GGCGGA	2 cut(s)	276, 541
Eco47I	GGWCC	3 cut(s)	249, 328, 693
Eco47III	AGCGCT	1 cut(s)	177
Eco91I	GGTNACC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	731
FaiI	YATR	5 cut(s)	46, 96, 293, 438, 729
FalI	AAGNNNNNCTT	2 cut(s)	664, 696
FatI	CATG	1 cut(s)	727
FauI	CCCGC	2 cut(s)	91, 520
Fnu4HI	GCNGC	3 cut(s)	15, 259, 323
Fsp4HI	GCNGC	3 cut(s)	15, 259, 323
FspBI	CTAG	3 cut(s)	11, 443, 733
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	2 cut(s)	177, 494
GluI	GCNGC	3 cut(s)	15, 259, 323
GsaI	CCCAGC	1 cut(s)	463
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	353, 468
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	2 cut(s)	178, 495
Hin1II	CATG	1 cut(s)	731
Hin6I	GCGC	2 cut(s)	176, 493
HinP1I	GCGC	2 cut(s)	176, 493
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	4 cut(s)	168, 280, 521, 620
HpaII	CCGG	1 cut(s)	383
Hpy188I	TCNGA	6 cut(s)	167, 359, 595, 625, 643, 662
Hpy99I	CGWCG	5 cut(s)	359, 430, 521, 620, 662
HpyAV	CCTTC	3 cut(s)	208, 517, 535
HpyCH4III	ACNGT	3 cut(s)	288, 367, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 567
HpyF3I	CTNAG	2 cut(s)	475, 530
Hsp92II	CATG	1 cut(s)	731
HspAI	GCGC	2 cut(s)	176, 493
Kzo9I	GATC	4 cut(s)	316, 334, 564, 595
LmnI	GCTCC	2 cut(s)	132, 608
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	3 cut(s)	11, 443, 733
MaeIII	GTNAC	2 cut(s)	3, 367
MalI	GATC	4 cut(s)	318, 336, 566, 597
MbiI	CCGCTC	1 cut(s)	603
MboI	GATC	4 cut(s)	316, 334, 564, 595
MboII	GAAGA	5 cut(s)	108, 111, 114, 230, 289
MflI	RGATCY	2 cut(s)	334, 564
MluCI	AATT	5 cut(s)	38, 55, 106, 243, 663
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	4 cut(s)	276, 337, 640, 648
MseI	TTAA	1 cut(s)	53
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	512, 567
NdeII	GATC	4 cut(s)	316, 334, 564, 595
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	731
NlaIV	GGNNCC	3 cut(s)	250, 330, 694
NmeAIII	GCCGAG	1 cut(s)	444
NsbI	TGCGCA	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	621
PfeI	GAWTC	3 cut(s)	168, 280, 521
PkrI	GCNGC	3 cut(s)	16, 260, 324
PleI	GAGTC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	207
PspEI	GGTNACC	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	250, 330, 694
PspPI	GGNCC	3 cut(s)	249, 328, 693
PsuI	RGATCY	2 cut(s)	334, 564
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	3 cut(s)	15, 259, 323
Sau3AI	GATC	4 cut(s)	316, 334, 564, 595
Sau96I	GGNCC	3 cut(s)	249, 328, 693
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	634
SinI	GGWCC	3 cut(s)	249, 328, 693
Sse9I	AATT	5 cut(s)	38, 55, 106, 243, 663
SsiI	CCGC	8 cut(s)	84, 258, 261, 417, 513, 552, 559, 601
SspMI	CTAG	3 cut(s)	11, 443, 733
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	288, 367, 709
TaqI	TCGA	2 cut(s)	428, 519
TasI	AATT	5 cut(s)	38, 55, 106, 243, 663
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	3 cut(s)	168, 280, 521
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	14, 322
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	249, 328, 693
XapI	RAATTY	2 cut(s)	55, 663
XspI	CTAG	3 cut(s)	11, 443, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.