Rorug01G0108200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014933
Physical Location & Seq
Forward (+)
19381299 .. 19387627
6329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0108200.1

Sequence Viewer

Length: 870 bp
ATGGCCTTCACCAACTCCTCTCTCTTTGCTTCCCATCTCACTCTCCATCGCTCTAAACTTTCCGATTCCGAATTTGCCCCTCCGCCATGCGAGGCCCTCAAGCTCCTTCACTTTCCTCCCAGCGCCATTCATGCCAGCACTTTCTCCAGAAATTTGAACGTTGTGTGTGCGTCTACCAATGGTGTCAATGCAGTTGGTTCATCGTCGCCGCAGAAGTCTGATCAAGATGCTGATTATATTCCAATGCCAGTTGTCATGATTGATCAAGATTCAGATTCTGATGCAACTATTGTGCAACTCAGCTTTGGTGATCGCCTCGGAGCTCTTATTGACACGATAAATGCATTAAAAGATTTGGGATTGGATGTAGCAAAGGGAACTGTTACCACTGAGGGACCAGTTAAACAGACGAAGTTTCATATAACGCGGTTAGACACCGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACAATCATCAACAATCTTTTGAAGTATCATCCAGAATCTAGTCAGCTACTTGCAATGGGTGAAGCTTTTGGAATAAAAGCTCCGGAAAAGAAGCTTGATGTTGATATCACAACTCATATACAAGTGAAGCAAGATGGACCTAAGAGGAGCTTGCTTTATATAGAGACAGCAGATCGACCAGGATTGCTTGTAGAAATTATCAAAATCATTGCTGACATTAATATCGATGTGGAATCAGCTGAGATTGATACAGAAGGTTTGGTTGCTAAAGATAAATTTCATGTCAGCTACAGAGGGGCAGCCTTAAATAGTTCCTTGTCCCAGGTGTTAGTGAACTGTCTGCGTTACTACATTCGCAGGCCAGAAACAGATATAGATAGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.75

Weight (kDa)

5.38

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40045
malus_domestica MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica Prupe.2G086600_v2.0.a1
pyrus_communis pycom07g06960
rosa_chinensis RchiOBHm_Chr1g0333251
rosa_laevigata RLG00000029618
rosa_multiflora Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii Rroxscaffold_4G00317670
rosa_rugosa Rorug01G0108200
rosa_samantha Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana Rw1G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 173
AccII CGCG 1 cut(s) 427
AccIII TCCGGA 1 cut(s) 565
AciI CCGC 3 cut(s) 83, 209, 427
AclI AACGTT 1 cut(s) 159
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 4 cut(s) 71, 151, 474, 758
AgsI TTSAA 3 cut(s) 157, 452, 505
AjnI CCWGG 2 cut(s) 661, 804
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 565
AoxI GGCC 3 cut(s) 3, 93, 842
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 4 cut(s) 71, 151, 474, 758
AseI ATTAAT 1 cut(s) 702
AspLEI GCGC 2 cut(s) 125, 444
AspS9I GGNCC 3 cut(s) 94, 395, 620
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 320, 554
AvaII GGWCC 2 cut(s) 395, 620
BanII GRGCYC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 794
BccI CCATC 3 cut(s) 42, 54, 611
BciT130I CCWGG 2 cut(s) 663, 806
BclI TGATCA 2 cut(s) 220, 262
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 772
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 2 cut(s) 209, 783
BlsI GCNGC 2 cut(s) 210, 784
Bme1390I CCNGG 3 cut(s) 439, 663, 806
Bme18I GGWCC 2 cut(s) 395, 620
BmgT120I GGNCC 3 cut(s) 94, 395, 620
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 3 cut(s) 439, 663, 806
BmsI GCATC 2 cut(s) 217, 271
BpmI CTGGAG 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 439
Bsa29I ATCGAT 1 cut(s) 708
BsaJI CCNNGG 2 cut(s) 316, 804
BsaWI WCCGGW 1 cut(s) 565
Bse1I ACTGG 2 cut(s) 248, 398
Bse3DI GCAATG 2 cut(s) 543, 690
BseAI TCCGGA 1 cut(s) 565
BseBI CCWGG 2 cut(s) 663, 806
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 2 cut(s) 316, 804
BseGI GGATG 2 cut(s) 370, 511
BseMI GCAATG 2 cut(s) 543, 690
BseMII CTCAG 3 cut(s) 313, 381, 714
BseNI ACTGG 2 cut(s) 248, 398
BseRI GAGGAG 2 cut(s) 7, 643
BseXI GCAGC 1 cut(s) 794
BseYI CCCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 3 cut(s) 5, 95, 844
BshVI ATCGAT 1 cut(s) 708
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 438, 566
BslFI GGGAC 2 cut(s) 408, 787
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 2 cut(s) 408, 787
BsnI GGCC 3 cut(s) 5, 95, 844
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 565
Bsp143I GATC 5 cut(s) 220, 262, 310, 454, 655
BspACI CCGC 3 cut(s) 83, 209, 427
BspANI GGCC 3 cut(s) 5, 95, 844
BspCNI CTCAG 3 cut(s) 312, 382, 715
BspDI ATCGAT 1 cut(s) 708
BspEI TCCGGA 1 cut(s) 565
BspFNI CGCG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 1 cut(s) 449
BsrDI GCAATG 2 cut(s) 543, 690
BsrI ACTGG 2 cut(s) 248, 398
BssECI CCNNGG 2 cut(s) 316, 804
BssMI GATC 5 cut(s) 220, 262, 310, 454, 655
Bst2UI CCWGG 2 cut(s) 663, 806
Bst4CI ACNGT 2 cut(s) 382, 821
BstC8I GCNNGC 3 cut(s) 136, 635, 842
BstDEI CTNAG 4 cut(s) 299, 390, 624, 723
BstF5I GGATG 2 cut(s) 370, 511
BstFNI CGCG 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 444
BstKTI GATC 5 cut(s) 223, 265, 313, 457, 658
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 5 cut(s) 220, 262, 310, 454, 655
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 663, 806
BstSCI CCNGG 3 cut(s) 437, 661, 804
BstSFI CTRYAG 1 cut(s) 772
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 794
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 708
BsuRI GGCC 3 cut(s) 5, 95, 844
BsuTUI ATCGAT 1 cut(s) 708
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 370, 511
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 3 cut(s) 136, 635, 842
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 255
CfoI GCGC 2 cut(s) 125, 444
Cfr13I GGNCC 3 cut(s) 94, 395, 620
ClaI ATCGAT 1 cut(s) 708
CseI GACGC 1 cut(s) 159
CviAII CATG 4 cut(s) 87, 131, 256, 764
DdeI CTNAG 4 cut(s) 299, 390, 624, 723
DpnI GATC 5 cut(s) 222, 264, 312, 456, 657
DpnII GATC 5 cut(s) 220, 262, 310, 454, 655
EciI GGCGGA 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 325
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 395, 620
Eco53kI GAGCTC 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 661, 804
EcoRV GATATC 1 cut(s) 589
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 325
FaeI CATG 4 cut(s) 90, 134, 259, 767
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 2 cut(s) 408, 787
FatI CATG 4 cut(s) 86, 130, 255, 763
FbaI TGATCA 2 cut(s) 220, 262
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 209, 783
FokI GGATG 2 cut(s) 377, 498
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 2 cut(s) 209, 783
FspBI CTAG 1 cut(s) 522
GlaI GCGC 2 cut(s) 124, 443
GluI GCNGC 2 cut(s) 209, 783
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 3 cut(s) 5, 95, 844
HapII CCGG 2 cut(s) 438, 566
HgaI GACGC 1 cut(s) 159
HhaI GCGC 2 cut(s) 125, 444
Hin1II CATG 4 cut(s) 90, 134, 259, 767
Hin6I GCGC 2 cut(s) 123, 442
HinP1I GCGC 2 cut(s) 123, 442
HindIII AAGCTT 2 cut(s) 546, 575
HinfI GANTC 5 cut(s) 65, 269, 275, 518, 716
HpaII CCGG 2 cut(s) 438, 566
HphI GGTGA 2 cut(s) 320, 554
Hpy166II GTNNAC 2 cut(s) 174, 817
Hpy188I TCNGA 6 cut(s) 64, 70, 220, 274, 280, 320
Hpy188III TCNNGA 7 cut(s) 147, 224, 256, 266, 458, 515, 566
Hpy8I GTNNAC 2 cut(s) 174, 817
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 16, 116, 731
HpyCH4III ACNGT 2 cut(s) 382, 821
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 5 cut(s) 191, 284, 295, 344, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 4 cut(s) 299, 390, 624, 723
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 4 cut(s) 90, 134, 259, 767
HspAI GCGC 2 cut(s) 123, 442
Kpn2I TCCGGA 1 cut(s) 565
Ksp22I TGATCA 2 cut(s) 220, 262
Kzo9I GATC 5 cut(s) 220, 262, 310, 454, 655
LmnI GCTCC 4 cut(s) 108, 320, 568, 630
Lsp1109I GCAGC 1 cut(s) 794
LweI GCATC 2 cut(s) 217, 271
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 382, 827, 863
MalI GATC 5 cut(s) 222, 264, 312, 456, 657
MboI GATC 5 cut(s) 220, 262, 310, 454, 655
MboII GAAGA 1 cut(s) 464
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 5 cut(s) 71, 151, 474, 678, 758
MnlI CCTC 9 cut(s) 28, 85, 90, 107, 126, 326, 385, 621, 770
Mph1103I ATGCAT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 565
MseI TTAA 4 cut(s) 347, 402, 702, 788
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 2 cut(s) 438, 566
MspR9I CCNGG 3 cut(s) 439, 663, 806
MvaI CCWGG 2 cut(s) 663, 806
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 439
NdeII GATC 5 cut(s) 220, 262, 310, 454, 655
NlaIII CATG 4 cut(s) 90, 134, 259, 767
NlaIV GGNNCC 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 346
PagI TCATGA 1 cut(s) 255
PfeI GAWTC 5 cut(s) 65, 269, 275, 518, 716
PkrI GCNGC 2 cut(s) 210, 784
PshBI ATTAAT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 325
Psp1406I AACGTT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 661, 804
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 661, 804
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 3 cut(s) 94, 395, 620
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 454
PvuII CAGCTG 1 cut(s) 722
SacI GAGCTC 1 cut(s) 325
SaqAI TTAA 4 cut(s) 347, 402, 702, 788
SatI GCNGC 2 cut(s) 209, 783
Sau3AI GATC 5 cut(s) 220, 262, 310, 454, 655
Sau96I GGNCC 3 cut(s) 94, 395, 620
ScrFI CCNGG 3 cut(s) 439, 663, 806
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 217, 271
SfcI CTRYAG 1 cut(s) 772
SinI GGWCC 2 cut(s) 395, 620
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 5 cut(s) 71, 151, 474, 678, 758
SsiI CCGC 3 cut(s) 83, 209, 427
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 325
StyD4I CCNGG 3 cut(s) 437, 661, 804
TaaI ACNGT 2 cut(s) 382, 821
TaiI ACGT 1 cut(s) 162
TaqI TCGA 3 cut(s) 478, 658, 708
TasI AATT 5 cut(s) 71, 151, 474, 678, 758
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 5 cut(s) 65, 269, 275, 518, 716
Tru1I TTAA 4 cut(s) 347, 402, 702, 788
Tru9I TTAA 4 cut(s) 347, 402, 702, 788
TscAI CASTG 1 cut(s) 394
TseI GCWGC 1 cut(s) 782
TspDTI ATGAA 4 cut(s) 119, 189, 407, 752
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 395, 620
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 4 cut(s) 71, 151, 474, 758
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 1 cut(s) 522
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.