Rroxscaffold_4G00317670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014933
Physical Location & Seq
Reverse (-)
43063885 .. 43066269
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317670.1

Sequence Viewer

Length: 591 bp
ATGGAGTCTAGCTCAGAAGAAAGGAGAGGCCTACTTCTTTTCAATGTCATTATGACTCCTAATTATATGAGGGTTGTAACGTTTGATGAGCAGGAAAACATGTTACGGCTCGCTGCTCTCTCGCTGCCCCCATTCCAATTCCCATACCCTTTAAATTCCACAACAATACCTCTATCTATTCCCGCCCAACAATATACCCACCTCAATTCTTTCTCTTCTTCTGCGCTCCTCCAAACCCAAATCCCCAAAAGACCCATCAGATTCGTAGCACTCGCAAACAACAACAACAATGGTTTGAACCGGGAGAAGGAAGGGGAGAAAGAGAAAGAGCAAGGAATTGGGTCCAACGGCGGAGGAGATGGGTCGGGGAAGAATCAGCGGTCTATATTCAGCAACATCAGGTGGGGCGATCTGCTGCTGGACCCAGATCCTAACAACATCTTGGCCGTCGGATTGACTGGGATACTGACATGGGCAAGCGTGCAGGTTCTGTGGCAGCTCTTGTTCATCTCGTTGGCTATACTCGTTGCTGCTGTTAAGTATTCCTTCATTGCTGCTGTTCTTCTTTTCATTCTCATTACCCTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.72

Weight (kDa)

6.59

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G40045
malus_domestica MD07G1069500.v1.1 MD07G1087200.v1.1
prunus_persica Prupe.2G086600_v2.0.a1
pyrus_communis pycom07g06960
rosa_chinensis RchiOBHm_Chr1g0333251
rosa_laevigata RLG00000029618
rosa_multiflora Rmu_sc0001009.1_g000031 Rmu_sc0004736.1_g000021
rosa_roxburghii Rroxscaffold_4G00317670
rosa_rugosa Rorug01G0108200
rosa_samantha Rh1AG131200 Rh1BG100600 Rh1CG125100 Rh1DG136600
rosa_wichuraiana Rw1G010850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 475
AciI CCGC 3 cut(s) 183, 351, 379
AclI AACGTT 1 cut(s) 80
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 1 cut(s) 444
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 307
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 2 cut(s) 43, 298
AluBI AGCT 2 cut(s) 12, 499
AluI AGCT 2 cut(s) 12, 499
AlwI GGATC 1 cut(s) 422
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 2 cut(s) 28, 444
ApeKI GCWGC 6 cut(s) 113, 124, 415, 496, 530, 554
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 342, 421
AsuC2I CCSGG 1 cut(s) 302
AvaII GGWCC 2 cut(s) 342, 421
BbvI GCAGC 6 cut(s) 100, 111, 402, 508, 517, 541
BccI CCATC 2 cut(s) 263, 353
BceAI ACGGC 3 cut(s) 122, 364, 431
BciVI GTATCC 1 cut(s) 456
BcnI CCSGG 1 cut(s) 302
BfaI CTAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 475
BfuI GTATCC 1 cut(s) 456
BisI GCNGC 6 cut(s) 114, 125, 416, 497, 531, 555
BlsI GCNGC 6 cut(s) 115, 126, 417, 498, 532, 556
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 2 cut(s) 342, 421
BmgT120I GGNCC 2 cut(s) 342, 421
BmiI GGNNCC 2 cut(s) 343, 423
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 468
BplI GAGNNNNNCTC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 218, 369
BseXI GCAGC 6 cut(s) 100, 111, 402, 508, 517, 541
BsgI GTGCAG 1 cut(s) 503
BshFI GGCC 2 cut(s) 30, 446
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 2 cut(s) 30, 446
Bsp143I GATC 2 cut(s) 409, 427
BspACI CCGC 3 cut(s) 183, 351, 379
BspANI GGCC 2 cut(s) 30, 446
BspCNI CTCAG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 343, 423
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 463
BssMI GATC 2 cut(s) 409, 427
Bst6I CTCTTC 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 111, 478, 482
BstDEI CTNAG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 412, 430
BstMBI GATC 2 cut(s) 409, 427
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 300
BstV1I GCAGC 6 cut(s) 100, 111, 402, 508, 517, 541
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 2 cut(s) 30, 446
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 3 cut(s) 111, 478, 482
CaiI CAGNNNCTG 1 cut(s) 490
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 342, 421
CviAII CATG 2 cut(s) 100, 471
CviJI RGCY 6 cut(s) 12, 30, 109, 446, 499, 518
CviKI_1 RGCY 6 cut(s) 12, 30, 109, 446, 499, 518
DdeI CTNAG 1 cut(s) 13
DpnI GATC 2 cut(s) 411, 429
DpnII GATC 2 cut(s) 409, 427
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
EciI GGCGGA 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 342, 421
FaeI CATG 2 cut(s) 103, 474
FaiI YATR 9 cut(s) 53, 66, 68, 101, 145, 195, 386, 472, 521
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FatI CATG 2 cut(s) 99, 470
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 6 cut(s) 114, 125, 416, 497, 531, 555
Fsp4HI GCNGC 6 cut(s) 114, 125, 416, 497, 531, 555
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 225
GluI GCNGC 6 cut(s) 114, 125, 416, 497, 531, 555
HaeIII GGCC 2 cut(s) 30, 446
HapII CCGG 1 cut(s) 301
HhaI GCGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 103, 474
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 4 cut(s) 5, 55, 261, 373
HpaII CCGG 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 16, 260, 452
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 3 cut(s) 301, 305, 556
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 1 cut(s) 484
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 2 cut(s) 103, 474
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 409, 427
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 7 cut(s) 77, 314, 385, 404, 438, 444, 470
Lsp1109I GCAGC 6 cut(s) 100, 111, 402, 508, 517, 541
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 76, 102
MalI GATC 2 cut(s) 411, 429
MboI GATC 2 cut(s) 409, 427
MboII GAAGA 5 cut(s) 29, 207, 210, 382, 554
MflI RGATCY 1 cut(s) 427
MluCI AATT 5 cut(s) 61, 137, 154, 205, 336
MlyI GAGTC 2 cut(s) 14, 49
MmeI TCCRAC 2 cut(s) 369, 430
MnlI CCTC 6 cut(s) 20, 63, 180, 212, 239, 347
MseI TTAA 3 cut(s) 152, 537, 589
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 302
NciI CCSGG 1 cut(s) 302
NdeII GATC 2 cut(s) 409, 427
NlaIII CATG 2 cut(s) 103, 474
NlaIV GGNNCC 2 cut(s) 343, 423
NspI RCATGY 1 cut(s) 103
PceI AGGCCT 1 cut(s) 30
PciI ACATGT 1 cut(s) 99
PfeI GAWTC 2 cut(s) 261, 373
PkrI GCNGC 6 cut(s) 115, 126, 417, 498, 532, 556
PleI GAGTC 2 cut(s) 13, 49
PpsI GAGTC 2 cut(s) 13, 49
PscI ACATGT 1 cut(s) 99
Psp1406I AACGTT 1 cut(s) 80
PspN4I GGNNCC 2 cut(s) 343, 423
PspPI GGNCC 2 cut(s) 342, 421
PstNI CAGNNNCTG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 427
SaqAI TTAA 3 cut(s) 152, 537, 589
SatI GCNGC 6 cut(s) 114, 125, 416, 497, 531, 555
Sau3AI GATC 2 cut(s) 409, 427
Sau96I GGNCC 2 cut(s) 342, 421
SchI GAGTC 2 cut(s) 14, 49
ScrFI CCNGG 1 cut(s) 302
SetI ASST 7 cut(s) 14, 83, 172, 204, 404, 489, 501
SinI GGWCC 2 cut(s) 342, 421
Sse9I AATT 5 cut(s) 61, 137, 154, 205, 336
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 3 cut(s) 183, 351, 379
SspMI CTAG 1 cut(s) 9
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 83
TasI AATT 5 cut(s) 61, 137, 154, 205, 336
TfiI GAWTC 2 cut(s) 261, 373
Tru1I TTAA 3 cut(s) 152, 537, 589
Tru9I TTAA 3 cut(s) 152, 537, 589
TseI GCWGC 6 cut(s) 113, 124, 415, 496, 530, 554
TspDTI ATGAA 3 cut(s) 496, 538, 559
VpaK11BI GGWCC 2 cut(s) 342, 421
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 103
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.