Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005129

Physical Location & Seq

Genomic Coordinates Reverse (-)

7196184 .. 7198492

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1075100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCGATTCTGTTGACCGGTTTCCCGTTGAATGAAACTTACTATCGCAACATTCTTGGTGAGATTGGTGGAATGTTTGCTATTGCAAACAAGGTTGACAGAGTTCATCAGCGACCTTGGATTGGGTTTCAAACTTGGCGTGCAACTGGTAGGAAGGTGACTTTGTCCAAGAAAGCTGAAGGAGTTTTGGAAGAAGCAATACAAGACAACACAAAAGGTAAAGTAATATACTTTTGGGGATGCTTGAACATTAATGGTGGGGTGACAGGAAATGAAGATGCACTCACATTTTGGTCCAAAATGAACTTGTGGATGGTTATTATAACTGAAATTTTGTATTTGAGCTACATGATATTTGTTGATTCTTTGGATGCATTGCACACCAATTCTGGCAATATAAATATGTGTCTGTTGGGTTCCTCAGAACTTGAGAGAAAGCATTGTTACTATCGGGTATTAGAAGTCTTTGTTAATGTCTGGGCTTATCATAGTGGACGAAAGATGGTTTTAATAGATCCAGTGTCTGGTTCACTGGAAGAGCAGCACCCAGTTGAGCTACGGAAAGGATTTATGTGGGCCAAGTATTTTGATAGTACATTGCTAAAGAGTATGGATGAGGATTTAGCAGAAGCTGCAGATGACGGTGATCATCCAAGGGAGATGTGGCTGTGGCCACTCACCGGGGAAGTGCATTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glycos_transf_1

Protein Analysis

234

Amino Acids

26.81

Weight (kDa)

5.4

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04480 AT5G04480
fragaria_vesca	FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830
malus_domestica	MD02G1241600.v1.1 MD07G1075100.v1.1
prunus_persica	Prupe.2G095400_v2.0.a1 Prupe.2G095400_v2.0.a1
pyrus_communis	pycom01g10260 pycom02g20700 pycom02g20720 pycom02g20730 pycom02g20780 pycom07g05910
rosa_chinensis	RchiOBHm_Chr1g0336581
rosa_laevigata	RLG00000029353
rosa_multiflora	Rmu_sc0009324.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315490
rosa_rugosa	Rorug01G0126500 Rorug01G0126600
rosa_samantha	Rh1AG147700 Rh1BG115500 Rh1CG139100 Rh1DG154200
rosa_wichuraiana	Rw1G011930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	524
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	3 cut(s)	122, 524, 680
AgeI	ACCGGT	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	31, 131, 247
AluBI	AGCT	4 cut(s)	176, 345, 556, 632
AluI	AGCT	4 cut(s)	176, 345, 556, 632
AlwI	GGATC	1 cut(s)	509
AlwNI	CAGNNNCTG	2 cut(s)	524, 632
AoxI	GGCC	2 cut(s)	576, 671
ApeKI	GCWGC	2 cut(s)	541, 632
ApoI	RAATTY	1 cut(s)	330
AseI	ATTAAT	1 cut(s)	252
AsiGI	ACCGGT	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	294, 576
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	5 cut(s)	71, 169, 274, 656, 670
AvaII	GGWCC	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	673
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbvI	GCAGC	2 cut(s)	553, 619
BccI	CCATC	2 cut(s)	307, 496
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	682
BfmI	CTRYAG	1 cut(s)	633
BisI	GCNGC	2 cut(s)	542, 633
BlsI	GCNGC	2 cut(s)	543, 634
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	294, 576
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	3 cut(s)	230, 268, 361
BmuI	ACTGGG	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	682
BsaJI	CCNNGG	3 cut(s)	116, 653, 681
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 524, 680
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	151, 518, 537, 548
Bse3DI	GCAATG	2 cut(s)	374, 596
BseDI	CCNNGG	3 cut(s)	116, 653, 681
BseGI	GGATG	5 cut(s)	245, 318, 376, 619, 649
BseLI	CCNNNNNNNGG	3 cut(s)	122, 524, 680
BseMI	GCAATG	2 cut(s)	374, 596
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	4 cut(s)	151, 518, 537, 548
BseXI	GCAGC	2 cut(s)	553, 619
BshFI	GGCC	2 cut(s)	578, 673
BshTI	ACCGGT	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	18, 681
BslI	CCNNNNNNNGG	3 cut(s)	122, 524, 680
BsnI	GGCC	2 cut(s)	578, 673
Bsp143I	GATC	2 cut(s)	514, 646
BspANI	GGCC	2 cut(s)	578, 673
BspCNI	CTCAG	1 cut(s)	434
BspLI	GGNNCC	1 cut(s)	418
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	1 cut(s)	509
BspQI	GCTCTTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	374, 596
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	4 cut(s)	151, 518, 537, 548
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	116, 653, 681
BssMI	GATC	2 cut(s)	514, 646
BssT1I	CCWWGG	2 cut(s)	116, 653
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	421
BstF5I	GGATG	5 cut(s)	245, 318, 376, 619, 649
BstKTI	GATC	2 cut(s)	517, 649
BstMBI	GATC	2 cut(s)	514, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	553, 619
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	2 cut(s)	578, 673
BtsCI	GGATG	5 cut(s)	245, 318, 376, 619, 649
BtsIMutI	CAGTG	2 cut(s)	525, 530
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	2 cut(s)	524, 632
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	294, 576
Csp6I	GTAC	1 cut(s)	594
CspAI	ACCGGT	1 cut(s)	17
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	8 cut(s)	176, 345, 482, 556, 578, 632, 667, 673
CviKI_1	RGCY	8 cut(s)	176, 345, 482, 556, 578, 632, 667, 673
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	2 cut(s)	516, 648
DpnII	GATC	2 cut(s)	514, 646
EaeI	YGGCCR	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	116, 653
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	116, 653
EcoT22I	ATGCAT	1 cut(s)	376
ErhI	CCWWGG	2 cut(s)	116, 653
FaeI	CATG	1 cut(s)	352
FaiI	YATR	8 cut(s)	229, 323, 350, 398, 404, 489, 572, 611
FatI	CATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	2 cut(s)	542, 633
FokI	GGATG	5 cut(s)	252, 325, 383, 626, 636
Fsp4HI	GCNGC	2 cut(s)	542, 633
GluI	GCNGC	2 cut(s)	542, 633
HaeIII	GGCC	2 cut(s)	578, 673
HapII	CCGG	2 cut(s)	18, 681
Hin1II	CATG	1 cut(s)	352
HincII	GTYRAC	2 cut(s)	15, 97
HindII	GTYRAC	2 cut(s)	15, 97
HinfI	GANTC	2 cut(s)	7, 362
HpaII	CCGG	2 cut(s)	18, 681
HphI	GGTGA	5 cut(s)	71, 169, 274, 656, 670
Hpy166II	GTNNAC	4 cut(s)	15, 97, 494, 530
Hpy188I	TCNGA	1 cut(s)	424
Hpy8I	GTNNAC	4 cut(s)	15, 97, 494, 530
HpyAV	CCTTC	2 cut(s)	148, 173
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4V	TGCA	7 cut(s)	86, 143, 281, 374, 379, 635, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	514, 646
LguI	GCTCTTC	1 cut(s)	531
Lsp1109I	GCAGC	2 cut(s)	553, 619
LweI	GCATC	3 cut(s)	230, 268, 361
MaeIII	GTNAC	3 cut(s)	157, 262, 443
MalI	GATC	2 cut(s)	516, 648
MboI	GATC	2 cut(s)	514, 646
MboII	GAAGA	3 cut(s)	203, 287, 548
MflI	RGATCY	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	673
MluCI	AATT	2 cut(s)	330, 385
MluNI	TGGCCA	1 cut(s)	673
MnlI	CCTC	2 cut(s)	430, 610
Mox20I	TGGCCA	1 cut(s)	673
Mph1103I	ATGCAT	1 cut(s)	376
MscI	TGGCCA	1 cut(s)	673
MseI	TTAA	3 cut(s)	252, 471, 509
Msp20I	TGGCCA	1 cut(s)	673
MspI	CCGG	2 cut(s)	18, 681
MspR9I	CCNGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	1 cut(s)	632
NciI	CCSGG	1 cut(s)	682
NdeII	GATC	2 cut(s)	514, 646
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	157, 262
NsiI	ATGCAT	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	7, 362
PflFI	GACNNNGTC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	524
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	543, 634
PshBI	ATTAAT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	294, 576
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	2 cut(s)	524, 632
PsuI	RGATCY	1 cut(s)	514
PsyI	GACNNNGTC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	252, 471, 509
SatI	GCNGC	2 cut(s)	542, 633
Sau3AI	GATC	2 cut(s)	514, 646
Sau96I	GGNCC	2 cut(s)	294, 576
ScrFI	CCNGG	1 cut(s)	682
SetI	ASST	8 cut(s)	96, 118, 159, 178, 220, 347, 558, 634
SfaNI	GCATC	3 cut(s)	230, 268, 361
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	330, 385
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	2 cut(s)	116, 653
TaaI	ACNGT	1 cut(s)	644
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	330, 385
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	7, 362
Tru1I	TTAA	3 cut(s)	252, 471, 509
Tru9I	TTAA	3 cut(s)	252, 471, 509
TscAI	CASTG	2 cut(s)	525, 537
TseFI	GTSAC	2 cut(s)	157, 262
TseI	GCWGC	2 cut(s)	541, 632
Tsp45I	GTSAC	2 cut(s)	157, 262
TspDTI	ATGAA	4 cut(s)	48, 95, 288, 317
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	525, 537
Tth111I	GACNNNGTC	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	294
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	660
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.