Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005129

Physical Location & Seq

Genomic Coordinates Forward (+)

18756208 .. 18760078

Gene Structure 3871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGCCGGAACTCATCGTCTCCTCCGGCTATCCTCGACGGCAATGGCGGTGCCGATCTCGGCTTCCACTCGATTCGCGATCGCTTTCCTTTCAAGCGGAACCCTAACCCTATCCACCAGAGAGACCGACCCAGGGGGCTCTTCACGGATCGACAACCTTTCCCTCGCCCCCCGCCGAGATCGCACCACCGCTTCTATCGCAAGGGCTTGCTCTGTCTTTTTCCCTTCAAAGGAAAGTCGGCGTTCTACGCGGTCCTCATCTTCGCGCTTTTTGTGTTCGCCGTGGCCAGGATGCTGTTGCAGAGCTCCATGACCTTGGTCTTCAGGCAAGGGAGTGAGAGAGGGCGCTTGCTCAGGGAAGGCTTGAAGTTTGGGAGCACCTTGAGGTTTATGCCTGGGAGGGTTTCGAAGAGGGTCGTGGAGGGTGATGGGCTTGATCGGGCTCGAAATGAGGCGAGGATTGGTGTTCGACCGCCGAGGCTTGCTCTTATTTTGGGAAACATGAAGAAAGATCCACAATCTTTGATGTTGATTACCGTGATGAAGAATATCAAGAAACTGGGTTATGAACTTAAGATTTTTTCTGTAGCGAATGGTAAAGCACATGAAATGTGGGAGCAATTTAATGGCCAGATTTCCATTTTAGCTCCGGAGAGTTATGGGCTTATTGATTGGTCAATTTTTGGAGGTGTCATTGCTGACTCACTGGAAGCAAAAGAATCCATTTCAAGCCTTATGCAGGAGCCTTTTTGTTCAGTACCACTGATATGGATAATTCAAGAAGATACACTTGCAAATCGGCTTCCCGTGTATGAAGAAATGGGCTTGAAGAATCTTATTTCTCATTGGAAAAGTGCTTTTAGCAGAGCTAATATTGTCGTGTTTCCAGATTTCACTCTGCCGATAGATATTGCCTTCTTTTGTTTTAAAAATATTTTGTTGCACCGTATTCCTAATTATTTTTGCAAAACGATTGTTCTGTGGTTTCTTAAATTGTCTTATTTTTTCCTTCCATCCTGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glycos_transf_1

Protein Analysis

342

Amino Acids

38.96

Weight (kDa)

10.07

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04480 AT5G04480
fragaria_vesca	FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830
malus_domestica	MD02G1241600.v1.1 MD07G1075100.v1.1
prunus_persica	Prupe.2G095400_v2.0.a1 Prupe.2G095400_v2.0.a1
pyrus_communis	pycom01g10260 pycom02g20700 pycom02g20720 pycom02g20730 pycom02g20780 pycom07g05910
rosa_chinensis	RchiOBHm_Chr1g0336581
rosa_laevigata	RLG00000029353
rosa_multiflora	Rmu_sc0009324.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315490
rosa_rugosa	Rorug01G0126500 Rorug01G0126600
rosa_samantha	Rh1AG147700 Rh1BG115500 Rh1CG139100 Rh1DG154200
rosa_wichuraiana	Rw1G011930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccII	CGCG	3 cut(s)	78, 251, 266
AccIII	TCCGGA	1 cut(s)	649
AciI	CCGC	6 cut(s)	48, 97, 173, 190, 251, 473
AclWI	GGATC	2 cut(s)	156, 506
AcoI	YGGCCR	2 cut(s)	285, 628
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	4 cut(s)	133, 230, 288, 739
AflII	CTTAAG	1 cut(s)	572
AgsI	TTSAA	6 cut(s)	94, 229, 367, 729, 779, 829
AjnI	CCWGG	3 cut(s)	131, 287, 394
AluBI	AGCT	3 cut(s)	306, 647, 869
AluI	AGCT	3 cut(s)	306, 647, 869
Alw21I	GWGCWC	2 cut(s)	308, 380
Alw26I	GTCTC	2 cut(s)	24, 117
AlwI	GGATC	2 cut(s)	156, 506
Aor13HI	TCCGGA	1 cut(s)	649
AoxI	GGCC	3 cut(s)	4, 285, 628
AsiSI	GCGATCGC	1 cut(s)	82
AspLEI	GCGC	2 cut(s)	268, 348
AspS9I	GGNCC	2 cut(s)	4, 253
AsuHPI	GGTGA	1 cut(s)	437
AsuII	TTCGAA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	2 cut(s)	287, 630
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	3 cut(s)	141, 308, 445
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	2 cut(s)	308, 380
BccI	CCATC	2 cut(s)	422, 1021
BceAI	ACGGC	2 cut(s)	55, 266
BciT130I	CCWGG	3 cut(s)	133, 289, 396
BcoDI	GTCTC	2 cut(s)	24, 117
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	349
BfrI	CTTAAG	1 cut(s)	572
Bme1390I	CCNGG	3 cut(s)	133, 289, 396
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	4, 253
BmiI	GGNNCC	3 cut(s)	52, 101, 744
BmrFI	CCNGG	3 cut(s)	133, 289, 396
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	569
BoxI	GACNNNNGTC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu14I	TTCGAA	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	403
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	6 cut(s)	131, 132, 282, 315, 395, 476
BsaWI	WCCGGW	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 230, 288, 739
Bse1I	ACTGG	2 cut(s)	564, 711
Bse3DI	GCAATG	2 cut(s)	49, 693
BseAI	TCCGGA	1 cut(s)	649
BseBI	CCWGG	3 cut(s)	133, 289, 396
BseDI	CCNNGG	6 cut(s)	131, 132, 282, 315, 395, 476
BseGI	GGATG	2 cut(s)	297, 1013
BseLI	CCNNNNNNNGG	4 cut(s)	133, 230, 288, 739
BseMI	GCAATG	2 cut(s)	49, 693
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	2 cut(s)	564, 711
BseRI	GAGGAG	1 cut(s)	12
Bsh1236I	CGCG	3 cut(s)	78, 251, 266
Bsh1285I	CGRYCG	2 cut(s)	82, 473
BshFI	GGCC	3 cut(s)	6, 287, 630
BshNI	GGYRCC	1 cut(s)	50
BsiEI	CGRYCG	2 cut(s)	82, 473
BsiHKAI	GWGCWC	2 cut(s)	308, 380
BsiSI	CCGG	3 cut(s)	7, 26, 650
BslI	CCNNNNNNNGG	4 cut(s)	133, 230, 288, 739
BsmAI	GTCTC	2 cut(s)	24, 117
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	6, 287, 630
Bso31I	GGTCTC	1 cut(s)	117
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	4 cut(s)	141, 308, 380, 445
Bsp13I	TCCGGA	1 cut(s)	649
Bsp143I	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	6 cut(s)	48, 97, 173, 190, 251, 473
BspANI	GGCC	3 cut(s)	6, 287, 630
BspCNI	CTCAG	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	649
BspFNI	CGCG	3 cut(s)	78, 251, 266
BspLI	GGNNCC	3 cut(s)	52, 101, 744
BspPI	GGATC	2 cut(s)	156, 506
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	49, 693
BsrI	ACTGG	2 cut(s)	564, 711
BssECI	CCNNGG	6 cut(s)	131, 132, 282, 315, 395, 476
BssMI	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	133, 289, 396
Bst4CI	ACNGT	2 cut(s)	538, 947
Bst6I	CTCTTC	2 cut(s)	146, 404
BstAFI	CTTAAG	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	209, 350, 483
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	282
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstF5I	GGATG	2 cut(s)	297, 1013
BstFNI	CGCG	3 cut(s)	78, 251, 266
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	268, 348
BstKTI	GATC	6 cut(s)	58, 82, 151, 182, 439, 514
BstMAI	GTCTC	2 cut(s)	24, 117
BstMBI	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
BstMCI	CGRYCG	2 cut(s)	82, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 198, 248
BstNI	CCWGG	3 cut(s)	133, 289, 396
BstPAI	GACNNNNGTC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	131, 287, 394
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	3 cut(s)	78, 251, 266
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	2 cut(s)	316, 768
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	3 cut(s)	6, 287, 630
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	297, 1013
BtsIMutI	CAGTG	2 cut(s)	704, 761
BtuMI	TCGCGA	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	209, 350, 483
CfoI	GCGC	2 cut(s)	268, 348
Cfr13I	GGNCC	2 cut(s)	4, 253
Csp6I	GTAC	1 cut(s)	758
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	3 cut(s)	310, 502, 605
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	6 cut(s)	57, 81, 150, 181, 438, 513
DpnII	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
DraI	TTTAAA	1 cut(s)	928
EaeI	YGGCCR	2 cut(s)	285, 628
Eam1104I	CTCTTC	2 cut(s)	146, 404
EarI	CTCTTC	2 cut(s)	146, 404
Ecl136II	GAGCTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	3 cut(s)	141, 308, 445
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRII	CCWGG	3 cut(s)	131, 287, 394
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	3 cut(s)	141, 308, 445
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	3 cut(s)	313, 505, 608
FaiI	YATR	9 cut(s)	311, 392, 503, 567, 606, 660, 737, 769, 813
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FatI	CATG	3 cut(s)	309, 501, 604
FauI	CCCGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	304, 1000
FriOI	GRGCYC	3 cut(s)	141, 308, 445
GlaI	GCGC	2 cut(s)	267, 347
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	6, 287, 630
HapII	CCGG	3 cut(s)	7, 26, 650
HhaI	GCGC	2 cut(s)	268, 348
Hin1II	CATG	3 cut(s)	313, 505, 608
Hin6I	GCGC	2 cut(s)	266, 346
HinP1I	GCGC	2 cut(s)	266, 346
HinfI	GANTC	4 cut(s)	73, 701, 719, 832
HpaII	CCGG	3 cut(s)	7, 26, 650
HphI	GGTGA	1 cut(s)	437
Hpy188I	TCNGA	1 cut(s)	1025
Hpy188III	TCNNGA	5 cut(s)	77, 553, 650, 779, 887
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	235, 353, 925, 1019
HpyCH4III	ACNGT	2 cut(s)	538, 947
HpyCH4V	TGCA	5 cut(s)	301, 739, 794, 943, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 198, 248
HpyF3I	CTNAG	1 cut(s)	353
Hsp92II	CATG	3 cut(s)	313, 505, 608
HspAI	GCGC	2 cut(s)	266, 346
Kpn2I	TCCGGA	1 cut(s)	649
Kzo9I	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	5 cut(s)	311, 375, 616, 652, 742
LweI	GCATC	1 cut(s)	282
MalI	GATC	6 cut(s)	57, 81, 150, 181, 438, 513
MboI	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
MboII	GAAGA	9 cut(s)	133, 253, 313, 421, 517, 556, 794, 827, 841
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	4 cut(s)	141, 308, 380, 445
MlsI	TGGCCA	2 cut(s)	287, 630
MluCI	AATT	5 cut(s)	620, 678, 774, 955, 992
MluNI	TGGCCA	2 cut(s)	287, 630
MlyI	GAGTC	1 cut(s)	695
Mox20I	TGGCCA	2 cut(s)	287, 630
MroI	TCCGGA	1 cut(s)	649
MscI	TGGCCA	2 cut(s)	287, 630
MseI	TTAA	4 cut(s)	573, 624, 927, 990
MslI	CAYNNNNRTG	1 cut(s)	766
Msp20I	TGGCCA	2 cut(s)	287, 630
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	3 cut(s)	7, 26, 650
MspR9I	CCNGG	3 cut(s)	133, 289, 396
MvaI	CCWGG	3 cut(s)	133, 289, 396
MvnI	CGCG	3 cut(s)	78, 251, 266
MwoI	GCNNNNNNNGC	3 cut(s)	181, 198, 248
NdeII	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
NlaIII	CATG	3 cut(s)	313, 505, 608
NlaIV	GGNNCC	3 cut(s)	52, 101, 744
NmeAIII	GCCGAG	3 cut(s)	39, 201, 501
NruI	TCGCGA	1 cut(s)	78
NspV	TTCGAA	1 cut(s)	407
PasI	CCCWGGG	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	3 cut(s)	73, 719, 832
Ple19I	CGATCG	1 cut(s)	82
PleI	GAGTC	1 cut(s)	695
PpsI	GAGTC	1 cut(s)	695
PshAI	GACNNNNGTC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	131, 287, 394
PspGI	CCWGG	3 cut(s)	131, 287, 394
PspN4I	GGNNCC	3 cut(s)	52, 101, 744
PspPI	GGNCC	2 cut(s)	4, 253
PsuI	RGATCY	1 cut(s)	511
PvuI	CGATCG	1 cut(s)	82
RgaI	GCGATCGC	1 cut(s)	82
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
RseI	CAYNNNNRTG	1 cut(s)	766
SacI	GAGCTC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	573, 624, 927, 990
Sau3AI	GATC	6 cut(s)	55, 79, 148, 179, 436, 511
Sau96I	GGNCC	2 cut(s)	4, 253
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	3 cut(s)	133, 289, 396
SduI	GDGCHC	4 cut(s)	141, 308, 380, 445
SetI	ASST	8 cut(s)	160, 308, 317, 383, 389, 649, 691, 871
SfaAI	GCGATCGC	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	407
SgfI	GCGATCGC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	382, 572
SmoI	CTYRAG	2 cut(s)	382, 572
Sse9I	AATT	5 cut(s)	620, 678, 774, 955, 992
SsiI	CCGC	6 cut(s)	48, 97, 173, 190, 251, 473
SspI	AATATT	2 cut(s)	874, 934
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	3 cut(s)	131, 287, 394
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	538, 947
TaqI	TCGA	6 cut(s)	36, 71, 151, 407, 445, 469
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	620, 678, 774, 955, 992
TfiI	GAWTC	3 cut(s)	73, 719, 832
Tru1I	TTAA	4 cut(s)	573, 624, 927, 990
Tru9I	TTAA	4 cut(s)	573, 624, 927, 990
TscAI	CASTG	2 cut(s)	711, 768
TspDTI	ATGAA	5 cut(s)	518, 557, 582, 621, 828
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	711, 768
Vha464I	CTTAAG	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	253
XagI	CCTNNNNNAGG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.