Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005129

Physical Location & Seq

Genomic Coordinates Forward (+)

11056468 .. 11057268

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCCTGTGGATGGGGACACGTGGTCTGTCATGCATAGCTGGGCCTTGCCAACGAAGTCCTTCCTAGAGTTTGTAATGTTTTCTAGAATGTTTGTAGATGCAATGGATGCACAAATGTATGATGAACACCATTCGAGTGGCCGCTGTTATTTGAGTTTGTCAAAAGACAAACATTGCTATTCACGGCTTCTTGAATTACTCATAAATGTTTGGGCGTACCACAGTGCGAGGCGGATGATATATGTGCACCCTGAGACTGGTGTGATGCAGGAACAACATGGGTTTAAGAGCAGGAAAGGTCATATGTGGATCAAATGGTTCTCATACTCCACCCTAAAGAGCATGGACGAGGACTTGGCCGAGGAATCAGATCTTGAGCACCCCAGAAGGCGGTGGTTGTGGCCATCAACAGGCGAGGTCTTCTGGCAAGGTATCTATGAAAAAGAGAGACATTTACGGCATAAGGAGAAAGAGAATAGGAGGAAGAAAAGTAAGGAAAAAATAAACAGAATAAGGAGGCGAACTCACCAAAAAGCAATCGGGAGGTATGTAAAACCCCCACCAGAAGCCACAGATAGTACGAACATAACAATTGTTACGAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

203

Amino Acids

24.31

Weight (kDa)

9.56

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04480 AT5G04480
fragaria_vesca	FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830
malus_domestica	MD02G1241600.v1.1 MD07G1075100.v1.1
prunus_persica	Prupe.2G095400_v2.0.a1 Prupe.2G095400_v2.0.a1
pyrus_communis	pycom01g10260 pycom02g20700 pycom02g20720 pycom02g20730 pycom02g20780 pycom07g05910
rosa_chinensis	RchiOBHm_Chr1g0336581
rosa_laevigata	RLG00000029353
rosa_multiflora	Rmu_sc0009324.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315490
rosa_rugosa	Rorug01G0126500 Rorug01G0126600
rosa_samantha	Rh1AG147700 Rh1BG115500 Rh1CG139100 Rh1DG154200
rosa_wichuraiana	Rw1G011930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	142, 232, 391
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	3 cut(s)	139, 357, 401
AcvI	CACGTG	1 cut(s)	21
AfaI	GTAC	2 cut(s)	218, 580
AfiI	CCNNNNNNNGG	4 cut(s)	11, 257, 390, 410
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	194
AhdI	GACNNNNNGTC	1 cut(s)	22
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw21I	GWGCWC	2 cut(s)	249, 381
Alw26I	GTCTC	2 cut(s)	248, 442
Alw44I	GTGCAC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	4 cut(s)	42, 139, 357, 401
ApaLI	GTGCAC	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	403
BbrPI	CACGTG	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	249, 381
BccI	CCATC	2 cut(s)	5, 412
BceAI	ACGGC	2 cut(s)	200, 473
BcoDI	GTCTC	2 cut(s)	248, 442
BfaI	CTAG	2 cut(s)	65, 84
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	42
BmsI	GCATC	3 cut(s)	88, 97, 255
BpiI	GAAGAC	1 cut(s)	412
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 257, 390, 410
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	2 cut(s)	108, 172
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	16, 112, 240
BseLI	CCNNNNNNNGG	4 cut(s)	11, 257, 390, 410
BseMI	GCAATG	2 cut(s)	108, 172
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	4 cut(s)	44, 141, 359, 403
BsiHKAI	GWGCWC	2 cut(s)	249, 381
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	4 cut(s)	11, 257, 390, 410
BsmAI	GTCTC	2 cut(s)	248, 442
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	44, 141, 359, 403
Bsp1286I	GDGCHC	2 cut(s)	249, 381
Bsp143I	GATC	2 cut(s)	309, 370
BspACI	CCGC	3 cut(s)	142, 232, 391
BspANI	GGCC	4 cut(s)	44, 141, 359, 403
BspCNI	CTCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	108, 172
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	2 cut(s)	309, 370
Bst4CI	ACNGT	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	16, 112, 240
BstKTI	GATC	2 cut(s)	312, 373
BstMAI	GTCTC	2 cut(s)	248, 442
BstMBI	GATC	2 cut(s)	309, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	4 cut(s)	44, 141, 359, 403
BtsCI	GGATG	3 cut(s)	16, 112, 240
BtsIMutI	CAGTG	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	217, 579
CviAII	CATG	3 cut(s)	31, 278, 343
CviJI	RGCY	7 cut(s)	39, 44, 141, 187, 359, 403, 569
CviKI_1	RGCY	7 cut(s)	39, 44, 141, 187, 359, 403, 569
CviQI	GTAC	2 cut(s)	217, 579
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	311, 372
DpnII	GATC	2 cut(s)	309, 370
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	3 cut(s)	139, 357, 401
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	247
Eco72I	CACGTG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	36
FaeI	CATG	3 cut(s)	34, 281, 346
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	3 cut(s)	30, 277, 342
FauNDI	CATATG	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	3 cut(s)	23, 119, 247
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	65, 84
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	4 cut(s)	44, 141, 359, 403
Hin1II	CATG	3 cut(s)	34, 281, 346
HinfI	GANTC	1 cut(s)	365
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	4 cut(s)	84, 191, 374, 541
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	70, 381
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	5 cut(s)	34, 101, 110, 247, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	34, 281, 346
Kzo9I	GATC	2 cut(s)	309, 370
LweI	GCATC	3 cut(s)	88, 97, 255
MaeI	CTAG	2 cut(s)	65, 84
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	311, 372
MboI	GATC	2 cut(s)	309, 370
MboII	GAAGA	2 cut(s)	412, 496
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	249, 381
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	2 cut(s)	194, 591
MluNI	TGGCCA	1 cut(s)	403
MnlI	CCTC	8 cut(s)	222, 343, 355, 409, 474, 510, 537, 594
Mox20I	TGGCCA	1 cut(s)	403
Mph1103I	ATGCAT	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	591
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	2 cut(s)	309, 370
NlaIII	CATG	3 cut(s)	34, 281, 346
NmeAIII	GCCGAG	1 cut(s)	385
NsiI	ATGCAT	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	21
PspCI	CACGTG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	2 cut(s)	218, 580
RsaNI	GTAC	2 cut(s)	217, 579
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	309, 370
Sau96I	GGNCC	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	249, 381
SetI	ASST	6 cut(s)	23, 41, 301, 420, 433, 548
SfaNI	GCATC	3 cut(s)	88, 97, 255
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	194, 591
SsiI	CCGC	3 cut(s)	142, 232, 391
SspMI	CTAG	2 cut(s)	65, 84
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	194, 591
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	138, 453
TspRI	CASTG	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	245
XbaI	TCTAGA	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	2 cut(s)	65, 84
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.