Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005129

Physical Location & Seq

Genomic Coordinates Forward (+)

18761050 .. 18761694

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20720.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGTGCTTTCTCACTTATGATTTCAAATGGGAAACTTTCTAAATTTGCTCGAACGGTTGCCTCTTCGGGAAGGCTGCTTGCTACGAACTTGCTGGCATCAGAATGCATAACCGGTTATGCAAGGCTTTTGGAGAATGTGCTAAATTTTCCATCAGATGCTCTGCTGCCAGGGCCAATCTCTCAGCTTCAACAGGGTACATGGGAGTGGAATTTGTTAGGGAATGAAATCGATTACAGAACAGGAAATGTTATGGACATTGATGAGCAGTCATCCTGGAAAAACACTAGTGTTGTTAATGCCCTAGAAGAAGACTTGTTGGGTTTTGGTTACTCACCAAACATCTCTGAAAATGTAACTTGGGATTCGGCATTAGATATTCCAACTCAATTAGATTGGGATCTCTTCAAGGAAATTGTAAGCTCGGAAGAATATGAGACATTAGAAATGGAGGAGCTATCAGAAAGAATGGAGAAAGATCCTGGTTTATGGGATGACATATATCGTAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glycos_transf_1

Protein Analysis

172

Amino Acids

19.27

Weight (kDa)

4.08

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04480 AT5G04480
fragaria_vesca	FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830 FvH4_7g06830
malus_domestica	MD02G1241600.v1.1 MD07G1075100.v1.1
prunus_persica	Prupe.2G095400_v2.0.a1 Prupe.2G095400_v2.0.a1
pyrus_communis	pycom01g10260 pycom02g20700 pycom02g20720 pycom02g20730 pycom02g20780 pycom07g05910
rosa_chinensis	RchiOBHm_Chr1g0336581
rosa_laevigata	RLG00000029353
rosa_multiflora	Rmu_sc0009324.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315490
rosa_rugosa	Rorug01G0126500 Rorug01G0126600
rosa_samantha	Rh1AG147700 Rh1BG115500 Rh1CG139100 Rh1DG154200
rosa_wichuraiana	Rw1G011930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	408, 473
AcsI	RAATTY	3 cut(s)	44, 145, 211
AfaI	GTAC	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	27, 191, 409
AhlI	ACTAGT	1 cut(s)	287
AjnI	CCWGG	3 cut(s)	169, 275, 481
AluBI	AGCT	3 cut(s)	187, 423, 457
AluI	AGCT	3 cut(s)	187, 423, 457
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	2 cut(s)	408, 473
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	76, 166
ApoI	RAATTY	3 cut(s)	44, 145, 211
AsiGI	ACCGGT	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	63, 153
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	3 cut(s)	171, 277, 483
BcoDI	GTCTC	1 cut(s)	431
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	2 cut(s)	288, 305
BisI	GCNGC	2 cut(s)	77, 167
BlsI	GCNGC	2 cut(s)	78, 168
Bme1390I	CCNGG	3 cut(s)	171, 277, 483
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	171, 277, 483
BmsI	GCATC	2 cut(s)	107, 148
BpiI	GAAGAC	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	113
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	171, 277, 483
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	272, 499
BseJI	GATNNNNATC	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	63, 153
BshFI	GGCC	1 cut(s)	175
BshTI	ACCGGT	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	400, 478
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	196
BspDI	ATCGAT	1 cut(s)	231
BspPI	GGATC	2 cut(s)	408, 473
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	2 cut(s)	400, 478
Bst2UI	CCWGG	3 cut(s)	171, 277, 483
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	70, 410
BstC8I	GCNNGC	2 cut(s)	81, 96
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	272, 499
BstKTI	GATC	2 cut(s)	403, 481
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	2 cut(s)	400, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	3 cut(s)	171, 277, 483
BstSCI	CCNGG	3 cut(s)	169, 275, 481
BstV1I	GCAGC	2 cut(s)	63, 153
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	400, 478
BstYI	RGATCY	2 cut(s)	400, 478
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	272, 499
Cac8I	GCNNGC	2 cut(s)	81, 96
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	198
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	6 cut(s)	76, 127, 175, 187, 423, 457
CviKI_1	RGCY	6 cut(s)	76, 127, 175, 187, 423, 457
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	2 cut(s)	402, 480
DpnII	GATC	2 cut(s)	400, 478
Eam1104I	CTCTTC	2 cut(s)	70, 410
EarI	CTCTTC	2 cut(s)	70, 410
EcoRII	CCWGG	3 cut(s)	169, 275, 481
EcoT22I	ATGCAT	1 cut(s)	110
FaeI	CATG	1 cut(s)	204
FaiI	YATR	9 cut(s)	20, 110, 120, 202, 254, 435, 490, 500, 502
FatI	CATG	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	77, 167
FokI	GGATG	2 cut(s)	259, 506
Fsp4HI	GCNGC	2 cut(s)	77, 167
FspBI	CTAG	2 cut(s)	288, 305
GluI	GCNGC	2 cut(s)	77, 167
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	1 cut(s)	204
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	5 cut(s)	103, 157, 349, 427, 463
Hpy188III	TCNNGA	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	108, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	400, 478
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	2 cut(s)	63, 153
LweI	GCATC	2 cut(s)	107, 148
MaeI	CTAG	2 cut(s)	288, 305
MaeIII	GTNAC	2 cut(s)	329, 355
MalI	GATC	2 cut(s)	402, 480
MboI	GATC	2 cut(s)	400, 478
MboII	GAAGA	5 cut(s)	57, 320, 323, 397, 440
MflI	RGATCY	2 cut(s)	400, 478
MluCI	AATT	5 cut(s)	44, 145, 211, 389, 414
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	2 cut(s)	73, 445
Mph1103I	ATGCAT	1 cut(s)	110
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	2 cut(s)	103, 205
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	3 cut(s)	171, 277, 483
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	3 cut(s)	171, 277, 483
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	2 cut(s)	400, 478
NlaIII	CATG	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	110
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	275
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	78, 168
Psp6I	CCWGG	3 cut(s)	169, 275, 481
PspGI	CCWGG	3 cut(s)	169, 275, 481
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	400, 478
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	2 cut(s)	103, 205
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	77, 167
Sau3AI	GATC	2 cut(s)	400, 478
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	3 cut(s)	171, 277, 483
SetI	ASST	3 cut(s)	189, 425, 459
SfaNI	GCATC	2 cut(s)	107, 148
SmiMI	CAYNNNNRTG	2 cut(s)	103, 205
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	5 cut(s)	44, 145, 211, 389, 414
SspMI	CTAG	2 cut(s)	288, 305
StyD4I	CCNGG	3 cut(s)	169, 275, 481
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	52, 231
TasI	AATT	5 cut(s)	44, 145, 211, 389, 414
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	2 cut(s)	76, 166
TspDTI	ATGAA	1 cut(s)	240
XapI	RAATTY	3 cut(s)	44, 145, 211
XspI	CTAG	2 cut(s)	288, 305
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.